Wall clock time and date at job start Mon Mar 30 2020 00:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47076 * 2 1 4 4 C 1.46907 * 110.99977 * 294.58996 * 3 2 1 5 5 C 1.50703 * 109.46984 * 295.91298 * 4 3 2 6 6 H 1.07998 * 120.00007 * 354.96121 * 5 4 3 7 7 C 1.37872 * 119.99722 * 174.96731 * 5 4 3 8 8 N 1.31518 * 120.00405 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46836 * 59.99435 * 9 7 5 11 11 H 1.48495 * 109.47396 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46646 * 299.99906 * 9 7 5 13 13 C 1.46892 * 110.99967 * 58.54537 * 3 2 1 14 14 H 1.09001 * 109.21323 * 296.66221 * 13 3 2 15 15 C 1.52825 * 109.21651 * 177.33006 * 13 3 2 16 16 C 1.53745 * 109.92067 * 301.21125 * 15 13 3 17 17 N 1.47574 * 106.52912 * 307.23746 * 16 15 13 18 18 C 1.33686 * 127.17899 * 237.92682 * 17 16 15 19 19 O 1.21286 * 125.30841 * 340.67589 * 18 17 16 20 20 C 1.51458 * 109.38747 * 160.70266 * 18 17 16 21 21 C 1.54529 * 104.22247 * 23.16460 * 20 18 17 22 22 C 1.47477 * 121.26899 * 54.03047 * 17 16 15 23 23 H 1.09002 * 110.83888 * 64.85094 * 22 17 16 24 24 C 1.53047 * 107.27064 * 304.42694 * 22 17 16 25 25 H 1.09006 * 109.46792 * 302.32982 * 1 2 3 26 26 H 1.09000 * 109.47714 * 62.32891 * 1 2 3 27 27 H 1.08997 * 109.47068 * 182.33084 * 1 2 3 28 28 H 1.08998 * 109.47073 * 239.99963 * 2 1 3 29 29 H 1.09000 * 109.47366 * 120.00179 * 2 1 3 30 30 H 1.08998 * 109.46811 * 55.91004 * 4 3 2 31 31 H 1.08996 * 109.46757 * 175.91396 * 4 3 2 32 32 H 0.96995 * 120.00238 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.39732 * 61.34893 * 15 13 3 34 34 H 1.09003 * 109.39643 * 181.07391 * 15 13 3 35 35 H 1.08995 * 110.03586 * 66.49121 * 16 15 13 36 36 H 1.09003 * 110.03738 * 187.87902 * 16 15 13 37 37 H 1.08998 * 110.47968 * 264.48237 * 20 18 17 38 38 H 1.09003 * 110.48396 * 141.84535 * 20 18 17 39 39 H 1.09006 * 110.70504 * 97.74549 * 21 20 18 40 40 H 1.09000 * 110.70076 * 220.80080 * 21 20 18 41 41 H 1.08997 * 109.63678 * 174.26230 * 24 22 17 42 42 H 1.09003 * 109.63211 * 294.86711 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6570 2.0716 -1.2471 5 6 2.3482 1.4033 -2.4077 6 1 3.0549 0.6065 -2.2291 7 6 2.0782 1.8094 -3.6973 8 7 1.2173 2.7795 -3.9148 9 14 2.9354 0.9816 -5.1359 10 1 2.6085 -0.4670 -5.1399 11 1 2.4748 1.5961 -6.4068 12 1 4.4042 1.1572 -5.0044 13 6 1.5204 2.1199 1.1698 14 1 0.4335 2.1831 1.1167 15 6 2.1062 3.5313 1.1648 16 6 3.6418 3.4612 1.1925 17 7 4.0022 2.5991 2.3348 18 6 4.7711 2.9220 3.3797 19 8 5.5600 3.8428 3.4115 20 6 4.5040 1.9585 4.5173 21 6 3.9359 0.7000 3.8234 22 6 3.4451 1.2408 2.4744 23 1 3.7851 0.5970 1.6631 24 6 1.9204 1.3699 2.4451 25 1 -0.3633 0.5496 0.8684 26 1 -0.3634 0.4772 -0.9101 27 1 -0.3633 -1.0268 0.0418 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5775 2.0210 -1.3890 31 1 1.9677 3.1148 -1.1910 32 1 1.0277 3.0654 -4.8220 33 1 1.7839 4.0539 0.2642 34 1 1.7527 4.0731 2.0421 35 1 4.0126 3.0260 0.2646 36 1 4.0588 4.4590 1.3295 37 1 3.7715 2.3769 5.2074 38 1 5.4300 1.7201 5.0406 39 1 4.7173 -0.0460 3.6784 40 1 3.1089 0.2832 4.3984 41 1 1.4688 0.3778 2.4434 42 1 1.5832 1.9275 3.3189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172190449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:05 Heat of formation + Delta-G solvation = -45.638378 kcal Electronic energy + Delta-G solvation = -21866.457312 eV Core-core repulsion = 18845.493266 eV Total energy + Delta-G solvation = -3020.964046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.84276 -39.60642 -37.46063 -35.06924 -34.61719 -32.57092 -31.24696 -29.84556 -28.41500 -26.98909 -25.18562 -23.95578 -23.08345 -22.12516 -20.72010 -19.36062 -18.36289 -17.42426 -16.92241 -16.76612 -16.71486 -16.47155 -15.77649 -15.38302 -15.05240 -14.69556 -14.39842 -14.20120 -13.80727 -13.65426 -13.42425 -13.29646 -13.12895 -13.07178 -12.81865 -12.61074 -12.57738 -12.30872 -12.09240 -11.98841 -11.69785 -11.61686 -11.46664 -11.11068 -11.03901 -10.72710 -10.53214 -9.56949 -8.75591 -8.16000 -6.23444 1.40347 1.42246 1.49556 1.61124 2.17925 2.41291 3.17337 3.37070 3.48627 3.69039 3.96028 3.99473 4.09149 4.13703 4.30505 4.37679 4.46682 4.54014 4.58067 4.66323 4.72530 4.76210 4.89716 4.90933 4.96623 5.02316 5.08112 5.11190 5.16765 5.21854 5.25065 5.35075 5.40519 5.49886 5.61713 5.68870 5.73071 6.15435 6.42083 6.47062 6.78362 6.95344 7.23534 7.45571 8.93960 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023567 B = 0.005893 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.808800 B = 4750.163658 C = 5186.116901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.058 3.942 3 N -0.529 5.529 4 C 0.205 3.795 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.078 3.922 14 H 0.032 0.968 15 C -0.121 4.121 16 C 0.144 3.856 17 N -0.609 5.609 18 C 0.502 3.498 19 O -0.598 6.598 20 C -0.141 4.141 21 C -0.114 4.114 22 C 0.133 3.867 23 H 0.081 0.919 24 C -0.110 4.110 25 H 0.061 0.939 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.094 0.906 30 H -0.030 1.030 31 H 0.007 0.993 32 H 0.261 0.739 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 -7.104 17.026 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.070 4.070 3 N -0.253 5.253 4 C 0.078 3.922 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.031 4.031 14 H 0.050 0.950 15 C -0.159 4.159 16 C 0.022 3.978 17 N -0.341 5.341 18 C 0.292 3.708 19 O -0.481 6.481 20 C -0.181 4.181 21 C -0.152 4.152 22 C 0.030 3.970 23 H 0.099 0.901 24 C -0.148 4.148 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.112 0.888 30 H -0.013 1.013 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.115 0.885 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.921 -6.500 16.849 18.083 hybrid contribution -0.711 0.402 -1.830 2.004 sum 0.210 -6.098 15.019 16.211 Atomic orbital electron populations 1.22269 0.98786 1.02052 1.00538 1.22076 0.92591 0.90393 1.01976 1.62319 1.58729 1.02385 1.01837 1.19402 0.92585 0.93499 0.86678 1.21436 1.23795 1.18633 0.91237 0.92255 1.25772 0.96048 0.95889 1.01701 1.70066 1.35997 1.29961 1.21525 0.85618 0.78868 0.78913 0.78300 1.19269 1.21307 1.19860 1.21622 0.96257 0.93202 0.92020 0.94997 1.21955 0.94940 0.97271 1.01732 1.21421 0.94837 0.93268 0.88272 1.48712 1.47148 1.16690 1.21568 1.21657 0.78572 0.84997 0.85570 1.90659 1.37386 1.36128 1.83887 1.22388 1.04842 0.95086 0.95804 1.22422 1.03108 0.96388 0.93284 1.21806 0.93673 0.82077 0.99402 0.90094 1.22062 0.95013 1.01826 0.95909 0.92012 0.95818 0.91082 0.92723 0.88815 1.01259 0.97505 0.93043 0.92607 0.90484 0.92154 0.91626 0.85958 0.87279 0.88817 0.86112 0.88550 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.56 9.21 71.98 0.66 -4.90 16 2 C 0.06 1.89 5.24 86.30 0.45 2.34 16 3 N -0.53 -19.82 3.16 -875.37 -2.77 -22.59 16 4 C 0.20 10.13 4.30 85.56 0.37 10.50 16 5 C -0.51 -27.87 8.31 25.60 0.21 -27.66 16 6 H 0.06 3.18 7.20 -2.91 -0.02 3.16 16 7 C 0.00 0.20 5.46 84.65 0.46 0.66 16 8 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 9 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.08 2.38 1.70 44.94 0.08 2.45 16 14 H 0.03 1.03 6.40 -2.39 -0.02 1.02 16 15 C -0.12 -3.92 5.16 30.79 0.16 -3.76 16 16 C 0.14 4.98 6.66 86.42 0.58 5.55 16 17 N -0.61 -17.88 2.94 -791.10 -2.32 -20.20 16 18 C 0.50 14.94 8.03 88.07 0.71 15.65 16 19 O -0.60 -23.55 17.80 -3.05 -0.05 -23.61 16 20 C -0.14 -2.41 6.91 30.61 0.21 -2.20 16 21 C -0.11 -1.55 6.70 31.25 0.21 -1.34 16 22 C 0.13 2.97 3.21 44.96 0.14 3.11 16 23 H 0.08 2.12 7.36 -2.39 -0.02 2.11 16 24 C -0.11 -2.31 4.38 30.70 0.13 -2.17 16 25 H 0.06 1.71 6.32 -2.38 -0.02 1.69 16 26 H 0.02 0.92 6.56 -2.39 -0.02 0.91 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 2.11 6.69 -2.39 -0.02 2.09 16 29 H 0.09 2.35 6.02 -2.39 -0.01 2.34 16 30 H -0.03 -1.66 6.32 -2.39 -0.02 -1.67 16 31 H 0.01 0.38 5.87 -2.39 -0.01 0.36 16 32 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.06 2.12 6.25 -2.39 -0.01 2.10 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 2.45 7.84 -2.39 -0.02 2.43 16 36 H 0.07 2.33 7.97 -2.39 -0.02 2.31 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.12 0.91 7.83 -2.39 -0.02 0.89 16 41 H 0.10 1.67 6.44 -2.39 -0.02 1.65 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.91 315.55 2.54 -67.37 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.00 Total: 9.95 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 4.38 Total: -1.75 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -4.81 Total: -98.11 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.91 2.54 -67.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172190449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.732 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds