Wall clock time and date at job start Mon Mar 30 2020 00:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46905 * 109.46651 * 2 1 4 4 C 1.46894 * 111.00396 * 292.12705 * 3 2 1 5 5 C 1.50703 * 109.46827 * 298.91196 * 4 3 2 6 6 H 1.07997 * 120.00135 * 1.92202 * 5 4 3 7 7 C 1.37878 * 119.99780 * 181.91611 * 5 4 3 8 8 N 1.31513 * 120.00187 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00087 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47000 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47145 * 120.00133 * 9 7 5 12 12 H 1.48495 * 109.47020 * 240.00312 * 9 7 5 13 13 C 1.46904 * 110.99740 * 56.08269 * 3 2 1 14 14 H 1.08997 * 108.86944 * 292.23518 * 13 3 2 15 15 C 1.52313 * 108.89124 * 50.82851 * 13 3 2 16 16 C 1.53433 * 109.66360 * 60.31537 * 15 13 3 17 17 N 1.47296 * 107.11253 * 54.50565 * 16 15 13 18 18 C 1.34398 * 125.54741 * 128.82461 * 17 16 15 19 19 O 1.21281 * 124.92782 * 0.60333 * 18 17 16 20 20 C 1.51300 * 110.14853 * 180.60253 * 18 17 16 21 21 C 1.54670 * 104.20957 * 16.58026 * 20 18 17 22 22 C 1.46768 * 123.22515 * 310.09899 * 17 16 15 23 23 H 1.09001 * 109.82609 * 281.67830 * 22 17 16 24 24 C 1.51743 * 108.89188 * 173.72917 * 13 3 2 25 25 H 1.08995 * 109.47733 * 57.50743 * 1 2 3 26 26 H 1.09006 * 109.46641 * 177.51305 * 1 2 3 27 27 H 1.09002 * 109.46512 * 297.50325 * 1 2 3 28 28 H 1.09002 * 109.46957 * 240.00807 * 2 1 3 29 29 H 1.08990 * 109.47650 * 120.00804 * 2 1 3 30 30 H 1.08992 * 109.47184 * 58.90972 * 4 3 2 31 31 H 1.08998 * 109.47190 * 178.92073 * 4 3 2 32 32 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 33 33 H 1.09008 * 109.42590 * 180.35315 * 15 13 3 34 34 H 1.08993 * 109.43558 * 300.25924 * 15 13 3 35 35 H 1.08997 * 109.94127 * 173.85391 * 16 15 13 36 36 H 1.09003 * 109.93147 * 295.08284 * 16 15 13 37 37 H 1.08996 * 110.48651 * 135.26337 * 20 18 17 38 38 H 1.08999 * 110.48344 * 257.77416 * 20 18 17 39 39 H 1.08998 * 110.96224 * 217.42263 * 21 20 18 40 40 H 1.08998 * 110.95500 * 93.67759 * 21 20 18 41 41 H 1.08997 * 108.83788 * 53.27016 * 24 13 3 42 42 H 1.08999 * 108.83822 * 171.61843 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7080 2.0536 -1.2703 5 6 2.3867 1.3245 -2.4013 6 1 2.9636 0.4339 -2.2005 7 6 2.2709 1.7945 -3.6923 8 7 1.5686 2.8792 -3.9368 9 14 3.1114 0.8903 -5.0943 10 1 3.8342 -0.2911 -4.5586 11 1 2.0918 0.4438 -6.0772 12 1 4.0770 1.8000 -5.7615 13 6 1.4735 2.1364 1.1381 14 1 0.4005 2.2632 0.9946 15 6 1.7095 1.3391 2.4143 16 6 3.2151 1.1263 2.6191 17 7 3.8489 2.4556 2.5878 18 6 4.6934 2.9406 3.5141 19 8 5.0584 2.3407 4.5029 20 6 5.1227 4.3435 3.1443 21 6 4.0868 4.7911 2.0866 22 6 3.6032 3.4389 1.5263 23 1 4.1783 3.1758 0.6384 24 6 2.1266 3.5054 1.1819 25 1 -0.3634 0.5520 -0.8667 26 1 -0.3633 -1.0268 -0.0446 27 1 -0.3632 0.4746 0.9116 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 0.6298 2.0475 -1.4293 31 1 2.0645 3.0831 -1.2361 32 1 1.4868 3.2096 -4.8451 33 1 1.3016 1.8863 3.2643 34 1 1.2140 0.3716 2.3343 35 1 3.3957 0.6523 3.5839 36 1 3.6150 0.5048 1.8178 37 1 5.0842 4.9965 4.0161 38 1 6.1261 4.3356 2.7187 39 1 4.5587 5.3897 1.3074 40 1 3.2656 5.3365 2.5516 41 1 2.0134 3.9807 0.2076 42 1 1.6180 4.1142 1.9294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172190450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:08 Heat of formation + Delta-G solvation = -28.506997 kcal Electronic energy + Delta-G solvation = -21812.447598 eV Core-core repulsion = 18792.226425 eV Total energy + Delta-G solvation = -3020.221174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63046 -38.32148 -36.21738 -33.77182 -32.52348 -31.81039 -29.71679 -28.75785 -26.76545 -25.54162 -23.50804 -22.79637 -21.66582 -21.07354 -19.46815 -17.85022 -16.55798 -16.24081 -16.11439 -15.44177 -15.06733 -14.81977 -14.44401 -13.88014 -13.58483 -13.27011 -13.21866 -13.15714 -12.54203 -12.36979 -12.09392 -11.86457 -11.68368 -11.63479 -11.40502 -11.10729 -11.00982 -10.84934 -10.76892 -10.63568 -10.31787 -10.21691 -10.00722 -9.60062 -9.51538 -9.14137 -8.50022 -8.32580 -7.19832 -6.08124 -4.08332 2.81978 3.26844 3.31271 3.35226 3.39276 4.37786 4.48743 4.63377 4.76680 4.94377 5.08842 5.20059 5.28551 5.36577 5.39023 5.59836 5.60565 5.73765 5.75018 5.83586 5.89361 5.90353 5.93300 5.97935 6.09386 6.20251 6.22259 6.30041 6.37837 6.43696 6.55755 6.66252 6.84841 6.89706 7.29275 7.37781 7.49574 7.75337 8.05003 8.18253 8.42841 8.51762 8.99412 9.55958 11.02743 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.006060 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.872551 B = 4619.280151 C = 5174.890284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.084 3.916 14 H 0.037 0.963 15 C -0.129 4.129 16 C 0.137 3.863 17 N -0.600 5.600 18 C 0.512 3.488 19 O -0.553 6.553 20 C -0.153 4.153 21 C -0.130 4.130 22 C 0.143 3.857 23 H 0.091 0.909 24 C -0.118 4.118 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.054 0.946 30 H -0.008 1.008 31 H 0.035 0.965 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 1.885 10.739 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.074 4.074 3 N -0.253 5.253 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.025 4.025 14 H 0.055 0.945 15 C -0.168 4.168 16 C 0.015 3.985 17 N -0.332 5.332 18 C 0.300 3.700 19 O -0.433 6.433 20 C -0.193 4.193 21 C -0.168 4.168 22 C 0.040 3.960 23 H 0.109 0.891 24 C -0.156 4.156 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.010 0.990 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.557 1.596 11.143 11.364 hybrid contribution -0.672 -0.341 -1.145 1.371 sum 0.885 1.255 9.998 10.115 Atomic orbital electron populations 1.22394 0.99535 1.01042 1.01615 1.22076 0.91962 0.91735 1.01598 1.62449 1.57765 1.01485 1.03597 1.19804 0.94680 0.94942 0.84279 1.21194 1.31025 1.11153 0.90943 0.91929 1.24955 0.95554 0.95130 0.98844 1.69955 1.40849 1.22470 1.20513 0.86509 0.79276 0.79822 0.82220 1.19729 1.21195 1.21065 1.21065 0.96570 0.93163 0.91736 0.94544 1.21924 0.96270 1.01081 0.97490 1.21569 0.91967 0.82872 1.02054 1.48472 1.44985 1.15832 1.23938 1.20872 0.78529 0.88539 0.82048 1.90673 1.59029 1.65514 1.28043 1.22320 1.01029 0.95066 1.00925 1.22718 0.98710 0.96848 0.98501 1.21259 0.97344 0.86789 0.90632 0.89057 1.21451 0.94033 0.97198 1.02913 0.91719 0.93496 0.93716 0.89799 0.92746 0.99018 0.94671 0.93026 0.92191 0.90422 0.90582 0.89839 0.88627 0.88098 0.89181 0.90249 0.89266 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.95 37.16 0.33 -2.76 16 2 C 0.05 0.96 5.12 -3.82 -0.02 0.94 16 3 N -0.53 -10.00 3.81 -229.28 -0.87 -10.87 16 4 C 0.19 4.41 4.30 -4.98 -0.02 4.39 16 5 C -0.50 -13.20 8.42 -34.44 -0.29 -13.49 16 6 H 0.06 1.64 6.72 -52.49 -0.35 1.29 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -25.44 13.29 55.43 0.74 -24.70 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.08 1.35 1.56 -68.70 -0.11 1.24 16 14 H 0.04 0.62 6.72 -51.93 -0.35 0.27 16 15 C -0.13 -1.80 4.87 -26.86 -0.13 -1.94 16 16 C 0.14 2.02 6.46 -3.38 -0.02 2.00 16 17 N -0.60 -9.04 3.07 -164.88 -0.51 -9.55 16 18 C 0.51 7.97 8.06 -10.86 -0.09 7.88 16 19 O -0.55 -10.52 17.51 5.56 0.10 -10.43 16 20 C -0.15 -1.74 6.86 -26.71 -0.18 -1.93 16 21 C -0.13 -1.41 6.67 -25.25 -0.17 -1.58 16 22 C 0.14 2.03 3.51 -67.80 -0.24 1.79 16 23 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 24 C -0.12 -1.76 4.80 -27.99 -0.13 -1.89 16 25 H 0.06 1.25 6.48 -51.93 -0.34 0.91 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.67 5.93 -51.93 -0.31 0.37 16 28 H 0.08 1.67 6.29 -51.93 -0.33 1.34 16 29 H 0.05 0.84 5.76 -51.93 -0.30 0.54 16 30 H -0.01 -0.20 6.44 -51.93 -0.33 -0.54 16 31 H 0.04 0.88 5.93 -51.93 -0.31 0.57 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 34 H 0.08 1.03 5.55 -51.93 -0.29 0.74 16 35 H 0.08 1.11 7.72 -51.93 -0.40 0.71 16 36 H 0.08 1.32 7.09 -51.93 -0.37 0.95 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.79 7.56 -51.93 -0.39 0.39 16 41 H 0.09 1.50 5.90 -51.93 -0.31 1.19 16 42 H 0.06 0.75 7.58 -51.93 -0.39 0.35 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -29.76 312.41 -8.46 -38.22 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.44 Total: 0.63 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.17 Total: -3.91 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.64 Total: -45.12 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.10 Total: -10.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.76 -8.46 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172190450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.715 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds