Wall clock time and date at job start Mon Mar 30 2020 00:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46905 * 109.46651 * 2 1 4 4 C 1.46894 * 111.00396 * 292.12705 * 3 2 1 5 5 C 1.50703 * 109.46827 * 298.91196 * 4 3 2 6 6 H 1.07997 * 120.00135 * 1.92202 * 5 4 3 7 7 C 1.37878 * 119.99780 * 181.91611 * 5 4 3 8 8 N 1.31513 * 120.00187 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00087 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47000 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47145 * 120.00133 * 9 7 5 12 12 H 1.48495 * 109.47020 * 240.00312 * 9 7 5 13 13 C 1.46904 * 110.99740 * 56.08269 * 3 2 1 14 14 H 1.08997 * 108.86944 * 292.23518 * 13 3 2 15 15 C 1.52313 * 108.89124 * 50.82851 * 13 3 2 16 16 C 1.53433 * 109.66360 * 60.31537 * 15 13 3 17 17 N 1.47296 * 107.11253 * 54.50565 * 16 15 13 18 18 C 1.34398 * 125.54741 * 128.82461 * 17 16 15 19 19 O 1.21281 * 124.92782 * 0.60333 * 18 17 16 20 20 C 1.51300 * 110.14853 * 180.60253 * 18 17 16 21 21 C 1.54670 * 104.20957 * 16.58026 * 20 18 17 22 22 C 1.46768 * 123.22515 * 310.09899 * 17 16 15 23 23 H 1.09001 * 109.82609 * 281.67830 * 22 17 16 24 24 C 1.51743 * 108.89188 * 173.72917 * 13 3 2 25 25 H 1.08995 * 109.47733 * 57.50743 * 1 2 3 26 26 H 1.09006 * 109.46641 * 177.51305 * 1 2 3 27 27 H 1.09002 * 109.46512 * 297.50325 * 1 2 3 28 28 H 1.09002 * 109.46957 * 240.00807 * 2 1 3 29 29 H 1.08990 * 109.47650 * 120.00804 * 2 1 3 30 30 H 1.08992 * 109.47184 * 58.90972 * 4 3 2 31 31 H 1.08998 * 109.47190 * 178.92073 * 4 3 2 32 32 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 33 33 H 1.09008 * 109.42590 * 180.35315 * 15 13 3 34 34 H 1.08993 * 109.43558 * 300.25924 * 15 13 3 35 35 H 1.08997 * 109.94127 * 173.85391 * 16 15 13 36 36 H 1.09003 * 109.93147 * 295.08284 * 16 15 13 37 37 H 1.08996 * 110.48651 * 135.26337 * 20 18 17 38 38 H 1.08999 * 110.48344 * 257.77416 * 20 18 17 39 39 H 1.08998 * 110.96224 * 217.42263 * 21 20 18 40 40 H 1.08998 * 110.95500 * 93.67759 * 21 20 18 41 41 H 1.08997 * 108.83788 * 53.27016 * 24 13 3 42 42 H 1.08999 * 108.83822 * 171.61843 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7080 2.0536 -1.2703 5 6 2.3867 1.3245 -2.4013 6 1 2.9636 0.4339 -2.2005 7 6 2.2709 1.7945 -3.6923 8 7 1.5686 2.8792 -3.9368 9 14 3.1114 0.8903 -5.0943 10 1 3.8342 -0.2911 -4.5586 11 1 2.0918 0.4438 -6.0772 12 1 4.0770 1.8000 -5.7615 13 6 1.4735 2.1364 1.1381 14 1 0.4005 2.2632 0.9946 15 6 1.7095 1.3391 2.4143 16 6 3.2151 1.1263 2.6191 17 7 3.8489 2.4556 2.5878 18 6 4.6934 2.9406 3.5141 19 8 5.0584 2.3407 4.5029 20 6 5.1227 4.3435 3.1443 21 6 4.0868 4.7911 2.0866 22 6 3.6032 3.4389 1.5263 23 1 4.1783 3.1758 0.6384 24 6 2.1266 3.5054 1.1819 25 1 -0.3634 0.5520 -0.8667 26 1 -0.3633 -1.0268 -0.0446 27 1 -0.3632 0.4746 0.9116 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 0.6298 2.0475 -1.4293 31 1 2.0645 3.0831 -1.2361 32 1 1.4868 3.2096 -4.8451 33 1 1.3016 1.8863 3.2643 34 1 1.2140 0.3716 2.3343 35 1 3.3957 0.6523 3.5839 36 1 3.6150 0.5048 1.8178 37 1 5.0842 4.9965 4.0161 38 1 6.1261 4.3356 2.7187 39 1 4.5587 5.3897 1.3074 40 1 3.2656 5.3365 2.5516 41 1 2.0134 3.9807 0.2076 42 1 1.6180 4.1142 1.9294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172190450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:08 Heat of formation + Delta-G solvation = -47.339900 kcal Electronic energy + Delta-G solvation = -21813.264254 eV Core-core repulsion = 18792.226425 eV Total energy + Delta-G solvation = -3021.037830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82919 -39.71393 -37.53308 -35.23434 -34.24810 -33.11167 -31.14924 -30.03340 -28.38986 -26.93286 -25.04470 -24.12141 -23.02735 -22.29280 -20.77999 -19.17748 -18.36351 -17.57168 -17.32054 -16.92997 -16.65303 -16.08287 -16.01535 -15.29681 -14.87029 -14.64285 -14.51499 -14.34914 -14.00051 -13.66828 -13.46160 -13.31229 -13.14331 -13.04646 -12.75504 -12.64068 -12.60283 -12.24923 -12.16006 -11.99840 -11.78990 -11.62280 -11.45519 -11.08385 -11.05172 -10.74921 -10.53138 -9.60012 -8.78456 -8.15969 -6.22359 1.40066 1.42573 1.53704 1.63268 2.16030 2.42306 3.17260 3.34705 3.43208 3.63008 3.90839 3.98522 4.01810 4.15472 4.31403 4.34186 4.45127 4.49688 4.53566 4.62587 4.71436 4.72535 4.86229 4.87824 4.96887 4.98733 5.03614 5.06714 5.14113 5.19068 5.20965 5.32031 5.36230 5.48735 5.58095 5.69227 5.72077 6.14805 6.32428 6.47226 6.77212 6.95322 7.22978 7.46308 8.94866 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.006060 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.872551 B = 4619.280151 C = 5174.890284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.054 3.946 3 N -0.530 5.530 4 C 0.207 3.793 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.082 3.918 14 H 0.030 0.970 15 C -0.117 4.117 16 C 0.135 3.865 17 N -0.602 5.602 18 C 0.503 3.497 19 O -0.593 6.593 20 C -0.143 4.143 21 C -0.118 4.118 22 C 0.143 3.857 23 H 0.064 0.936 24 C -0.115 4.115 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.083 0.917 30 H -0.036 1.036 31 H 0.018 0.982 32 H 0.262 0.738 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 2.061 11.829 12.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.075 4.075 3 N -0.254 5.254 4 C 0.080 3.920 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.782 3.218 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.207 1.207 13 C -0.027 4.027 14 H 0.048 0.952 15 C -0.155 4.155 16 C 0.013 3.987 17 N -0.334 5.334 18 C 0.293 3.707 19 O -0.475 6.475 20 C -0.183 4.183 21 C -0.156 4.156 22 C 0.040 3.960 23 H 0.083 0.917 24 C -0.153 4.153 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.101 0.899 30 H -0.019 1.019 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.931 1.768 12.230 12.507 hybrid contribution -0.808 -0.433 -1.456 1.720 sum 1.123 1.335 10.775 10.915 Atomic orbital electron populations 1.22279 0.98482 1.01991 1.00814 1.22097 0.92822 0.90864 1.01669 1.62358 1.58304 1.02127 1.02608 1.19406 0.92359 0.94177 0.86008 1.21503 1.30635 1.10990 0.92034 0.92379 1.25728 0.96242 0.95884 1.01326 1.70064 1.42255 1.23901 1.21057 0.85528 0.78278 0.78773 0.79198 1.19145 1.20891 1.20654 1.21192 0.96136 0.93879 0.91466 0.95231 1.21840 0.95764 1.01445 0.96482 1.21550 0.92473 0.83003 1.01663 1.48606 1.44867 1.15931 1.23983 1.21581 0.77883 0.89951 0.81289 1.90649 1.60314 1.66912 1.29650 1.22352 1.01614 0.92466 1.01839 1.22726 0.99158 0.94985 0.98711 1.21229 0.96410 0.88596 0.89786 0.91743 1.21406 0.94898 0.96644 1.02390 0.95194 0.91392 0.91993 0.92417 0.89890 1.01864 0.96413 0.92957 0.90649 0.89297 0.90296 0.91194 0.86489 0.86723 0.87524 0.88517 0.91603 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.72 8.95 71.98 0.64 -5.08 16 2 C 0.05 1.87 5.12 86.30 0.44 2.31 16 3 N -0.53 -20.22 3.81 -879.31 -3.35 -23.57 16 4 C 0.21 10.03 4.30 85.56 0.37 10.40 16 5 C -0.51 -27.48 8.42 25.60 0.22 -27.27 16 6 H 0.06 3.10 6.72 -2.91 -0.02 3.08 16 7 C 0.01 0.33 5.46 84.66 0.46 0.80 16 8 N -0.93 -53.91 13.29 21.45 0.28 -53.62 16 9 Si 0.96 43.32 29.54 68.60 2.03 45.34 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.08 2.57 1.56 44.27 0.07 2.64 16 14 H 0.03 0.99 6.72 -2.39 -0.02 0.97 16 15 C -0.12 -3.03 4.87 30.51 0.15 -2.88 16 16 C 0.13 3.82 6.46 86.37 0.56 4.37 16 17 N -0.60 -17.36 3.07 -794.17 -2.44 -19.80 16 18 C 0.50 14.83 8.06 87.91 0.71 15.54 16 19 O -0.59 -21.96 17.51 -3.03 -0.05 -22.01 16 20 C -0.14 -2.84 6.86 30.61 0.21 -2.63 16 21 C -0.12 -2.25 6.67 31.56 0.21 -2.03 16 22 C 0.14 3.90 3.51 44.93 0.16 4.06 16 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 24 C -0.12 -3.34 4.80 29.78 0.14 -3.20 16 25 H 0.03 1.16 6.48 -2.39 -0.02 1.15 16 26 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.06 1.77 5.93 -2.39 -0.01 1.76 16 28 H 0.06 2.32 6.29 -2.39 -0.01 2.30 16 29 H 0.08 2.43 5.76 -2.39 -0.01 2.42 16 30 H -0.04 -1.95 6.44 -2.39 -0.02 -1.96 16 31 H 0.02 0.93 5.93 -2.39 -0.01 0.91 16 32 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.09 2.11 5.55 -2.39 -0.01 2.09 16 35 H 0.08 2.21 7.72 -2.39 -0.02 2.19 16 36 H 0.07 2.17 7.09 -2.39 -0.02 2.15 16 37 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 40 H 0.10 1.55 7.56 -2.39 -0.02 1.53 16 41 H 0.07 2.24 5.90 -2.39 -0.01 2.23 16 42 H 0.08 1.96 7.58 -2.39 -0.02 1.94 16 Total: -1.00 -65.56 312.41 1.82 -63.74 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.01 Total: 12.90 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 4.34 Total: -2.98 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -5.50 Total: -96.99 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.05 Total: -22.01 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -65.56 1.82 -63.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172190450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.401 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds