Wall clock time and date at job start Mon Mar 30 2020 00:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47049 * 2 1 4 4 C 1.46899 * 111.00423 * 286.11395 * 3 2 1 5 5 C 1.50691 * 109.47555 * 74.25926 * 4 3 2 6 6 H 1.08002 * 119.99567 * 2.98246 * 5 4 3 7 7 C 1.37872 * 120.00231 * 182.98330 * 5 4 3 8 8 N 1.31518 * 119.99872 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00246 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47149 * 59.99460 * 9 7 5 11 11 H 1.48498 * 109.47256 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46857 * 299.99827 * 9 7 5 13 13 C 1.46904 * 111.00008 * 162.15101 * 3 2 1 14 14 H 1.08997 * 109.21334 * 174.60265 * 13 3 2 15 15 C 1.52828 * 109.21014 * 55.22820 * 13 3 2 16 16 C 1.53754 * 109.90805 * 178.11156 * 15 13 3 17 17 N 1.47565 * 106.52416 * 52.77767 * 16 15 13 18 18 C 1.33690 * 127.17112 * 122.06248 * 17 16 15 19 19 O 1.21287 * 125.30994 * 19.31048 * 18 17 16 20 20 C 1.51460 * 109.38544 * 199.31586 * 18 17 16 21 21 C 1.54528 * 104.22214 * 336.82343 * 20 18 17 22 22 C 1.47478 * 121.27767 * 305.95173 * 17 16 15 23 23 H 1.09002 * 110.30855 * 294.82507 * 22 17 16 24 24 C 1.53053 * 107.26538 * 55.56619 * 22 17 16 25 25 H 1.09000 * 109.47196 * 191.39852 * 1 2 3 26 26 H 1.09006 * 109.47064 * 311.39565 * 1 2 3 27 27 H 1.08995 * 109.47827 * 71.39468 * 1 2 3 28 28 H 1.09003 * 109.46689 * 240.00919 * 2 1 3 29 29 H 1.08994 * 109.47695 * 120.00409 * 2 1 3 30 30 H 1.08997 * 109.46979 * 194.26776 * 4 3 2 31 31 H 1.09001 * 109.46627 * 314.25904 * 4 3 2 32 32 H 0.97004 * 119.99966 * 180.02562 * 8 7 5 33 33 H 1.08990 * 109.40031 * 57.97976 * 15 13 3 34 34 H 1.09000 * 109.32262 * 298.19347 * 15 13 3 35 35 H 1.09000 * 110.03139 * 293.52518 * 16 15 13 36 36 H 1.08997 * 110.03701 * 172.03481 * 16 15 13 37 37 H 1.09005 * 110.48020 * 95.50550 * 20 18 17 38 38 H 1.08992 * 110.48200 * 218.13790 * 20 18 17 39 39 H 1.09009 * 110.70441 * 262.25585 * 21 20 18 40 40 H 1.08997 * 110.70662 * 139.02937 * 21 20 18 41 41 H 1.08998 * 109.63115 * 65.16109 * 24 22 17 42 42 H 1.08993 * 109.63348 * 185.75727 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8363 2.0083 -1.3175 5 6 0.3789 2.3329 -1.5213 6 1 -0.3321 2.1439 -0.7306 7 6 -0.0468 2.8712 -2.7171 8 7 0.8191 3.1018 -3.6797 9 14 -1.8533 3.2742 -2.9695 10 1 -2.2851 4.2685 -1.9545 11 1 -2.0494 3.8383 -4.3291 12 1 -2.6614 2.0367 -2.8252 13 6 3.4259 1.4462 0.4204 14 1 3.7865 2.4697 0.3183 15 6 4.2584 0.5280 -0.4737 16 6 5.7415 0.6158 -0.0778 17 7 5.8042 0.3601 1.3741 18 6 6.4952 -0.6006 1.9961 19 8 7.4313 -1.2094 1.5225 20 6 5.9269 -0.8103 3.3842 21 6 5.2194 0.5242 3.7105 22 6 4.9942 1.1438 2.3253 23 1 5.3108 2.1868 2.3221 24 6 3.5327 1.0187 1.8881 25 1 -0.3633 -1.0074 0.2031 26 1 -0.3633 0.6796 0.7710 27 1 -0.3634 0.3278 -0.9739 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.4236 2.9249 -1.3707 31 1 2.1671 1.3192 -2.0946 32 1 0.5196 3.4808 -4.5209 33 1 4.1427 0.8332 -1.5136 34 1 3.9129 -0.4991 -0.3571 35 1 6.1288 1.6104 -0.2990 36 1 6.3167 -0.1382 -0.6151 37 1 5.2102 -1.6316 3.3828 38 1 6.7271 -1.0024 4.0989 39 1 5.8612 1.1621 4.3182 40 1 4.2683 0.3437 4.2113 41 1 3.2065 -0.0160 1.9929 42 1 2.9094 1.6664 2.5045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172190452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:14 Heat of formation + Delta-G solvation = -28.513715 kcal Electronic energy + Delta-G solvation = -21415.057794 eV Core-core repulsion = 18394.836329 eV Total energy + Delta-G solvation = -3020.221465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84072 -38.19926 -36.43687 -33.91129 -32.65760 -31.54284 -29.70246 -28.94510 -27.25913 -25.42313 -23.28125 -22.47697 -21.97536 -21.07621 -19.65527 -18.62452 -16.60151 -16.37714 -15.90492 -15.67579 -15.05763 -14.51944 -14.46924 -14.01525 -13.92240 -13.63345 -13.20436 -13.06121 -12.60565 -12.50996 -12.16225 -12.04487 -11.88729 -11.39977 -11.23221 -11.16998 -11.03861 -10.96756 -10.87614 -10.56417 -10.40783 -10.28365 -10.14621 -9.75763 -9.38870 -9.09706 -8.62008 -8.39962 -7.28048 -6.03178 -4.02106 2.55969 3.03575 3.31627 3.36534 3.38731 4.24544 4.37828 4.41125 4.61472 4.82793 4.88590 5.08361 5.18956 5.25726 5.31474 5.37152 5.42162 5.52522 5.56564 5.66492 5.75174 5.81476 5.83941 5.98553 6.05161 6.11093 6.20116 6.31283 6.34499 6.51699 6.58573 6.65408 6.86885 7.15859 7.24005 7.32970 7.34504 7.82597 8.09894 8.17884 8.18889 8.53960 9.03893 9.59953 11.07405 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.004656 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.027582 B = 6011.808316 C = 6314.264084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 N -0.529 5.529 4 C 0.193 3.807 5 C -0.505 4.505 6 H 0.073 0.927 7 C 0.053 3.947 8 N -0.900 5.900 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.086 3.914 14 H 0.076 0.924 15 C -0.168 4.168 16 C 0.132 3.868 17 N -0.616 5.616 18 C 0.520 3.480 19 O -0.542 6.542 20 C -0.155 4.155 21 C -0.125 4.125 22 C 0.128 3.872 23 H 0.085 0.915 24 C -0.117 4.117 25 H 0.029 0.971 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.024 0.976 31 H -0.004 1.004 32 H 0.261 0.739 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -4.811 13.089 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 N -0.253 5.253 4 C 0.068 3.932 5 C -0.543 4.543 6 H 0.091 0.909 7 C -0.148 4.148 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.023 4.023 14 H 0.094 0.906 15 C -0.208 4.208 16 C 0.010 3.990 17 N -0.350 5.350 18 C 0.308 3.692 19 O -0.420 6.420 20 C -0.195 4.195 21 C -0.163 4.163 22 C 0.023 3.977 23 H 0.103 0.897 24 C -0.156 4.156 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.014 0.986 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.140 -4.762 12.885 15.481 hybrid contribution -0.546 -0.141 -1.007 1.154 sum 6.594 -4.903 11.877 14.443 Atomic orbital electron populations 1.22045 0.95242 0.98572 1.04634 1.21877 0.96450 0.89785 0.98153 1.62414 1.13966 1.16235 1.32648 1.19762 0.97520 0.93486 0.82420 1.21343 0.93322 1.40331 0.99316 0.90940 1.24995 0.97605 0.96027 0.96135 1.69948 1.33975 1.44848 1.05242 0.86627 0.85339 0.78744 0.77110 1.20218 1.21472 1.20271 1.21643 0.89586 0.98425 0.92695 0.90606 1.22758 0.94394 1.01669 1.01937 1.21805 0.97288 1.01751 0.78113 1.48700 1.44964 1.33892 1.07456 1.20695 0.81670 0.78679 0.88193 1.90704 1.26969 1.51657 1.72645 1.22379 1.01841 0.99514 0.95787 1.22335 1.02135 0.95801 0.96053 1.21822 0.91917 0.95827 0.88091 0.89667 1.22085 0.93927 1.02438 0.97126 0.95199 0.92716 0.89559 0.95931 0.93294 0.95835 0.98633 0.92973 0.89987 0.91685 0.90981 0.89846 0.87941 0.88508 0.89973 0.89026 0.91411 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.52 37.16 0.32 -2.44 16 2 C 0.07 1.20 4.40 -3.83 -0.02 1.18 16 3 N -0.53 -10.41 4.42 -228.04 -1.01 -11.41 16 4 C 0.19 4.71 4.07 -4.98 -0.02 4.69 16 5 C -0.50 -13.36 7.08 -34.45 -0.24 -13.61 16 6 H 0.07 1.88 5.66 -52.49 -0.30 1.59 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.09 1.37 2.06 -67.67 -0.14 1.23 16 14 H 0.08 1.27 7.84 -51.93 -0.41 0.86 16 15 C -0.17 -2.58 4.67 -26.43 -0.12 -2.70 16 16 C 0.13 1.80 6.96 -3.07 -0.02 1.78 16 17 N -0.62 -8.00 2.94 -163.78 -0.48 -8.48 16 18 C 0.52 7.22 8.03 -11.10 -0.09 7.13 16 19 O -0.54 -9.68 17.79 5.55 0.10 -9.59 16 20 C -0.15 -1.46 6.91 -26.71 -0.18 -1.65 16 21 C -0.13 -1.00 6.71 -25.72 -0.17 -1.17 16 22 C 0.13 1.36 3.58 -67.16 -0.24 1.12 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 C -0.12 -1.46 4.53 -26.57 -0.12 -1.58 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 1.02 7.82 -51.93 -0.41 0.62 16 27 H 0.09 1.87 5.76 -51.93 -0.30 1.58 16 28 H 0.02 0.44 7.01 -51.93 -0.36 0.07 16 29 H 0.05 0.78 5.93 -51.93 -0.31 0.47 16 30 H 0.02 0.62 7.77 -51.93 -0.40 0.22 16 31 H 0.00 -0.11 7.06 -51.93 -0.37 -0.48 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.08 1.42 6.95 -51.93 -0.36 1.06 16 34 H 0.06 1.03 6.81 -51.93 -0.35 0.68 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.17 7.96 -51.93 -0.41 0.76 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.09 0.61 7.82 -51.93 -0.41 0.21 16 41 H 0.07 0.86 6.36 -51.93 -0.33 0.53 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -30.66 318.31 -8.84 -39.50 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.81 Total: -0.93 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.15 Total: -4.65 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.75 Total: -45.19 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.10 Total: -9.59 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.66 -8.84 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172190452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.989 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds