Wall clock time and date at job start Mon Mar 30 2020 00:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47049 * 2 1 4 4 C 1.46899 * 111.00423 * 286.11395 * 3 2 1 5 5 C 1.50691 * 109.47555 * 74.25926 * 4 3 2 6 6 H 1.08002 * 119.99567 * 2.98246 * 5 4 3 7 7 C 1.37872 * 120.00231 * 182.98330 * 5 4 3 8 8 N 1.31518 * 119.99872 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00246 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47149 * 59.99460 * 9 7 5 11 11 H 1.48498 * 109.47256 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46857 * 299.99827 * 9 7 5 13 13 C 1.46904 * 111.00008 * 162.15101 * 3 2 1 14 14 H 1.08997 * 109.21334 * 174.60265 * 13 3 2 15 15 C 1.52828 * 109.21014 * 55.22820 * 13 3 2 16 16 C 1.53754 * 109.90805 * 178.11156 * 15 13 3 17 17 N 1.47565 * 106.52416 * 52.77767 * 16 15 13 18 18 C 1.33690 * 127.17112 * 122.06248 * 17 16 15 19 19 O 1.21287 * 125.30994 * 19.31048 * 18 17 16 20 20 C 1.51460 * 109.38544 * 199.31586 * 18 17 16 21 21 C 1.54528 * 104.22214 * 336.82343 * 20 18 17 22 22 C 1.47478 * 121.27767 * 305.95173 * 17 16 15 23 23 H 1.09002 * 110.30855 * 294.82507 * 22 17 16 24 24 C 1.53053 * 107.26538 * 55.56619 * 22 17 16 25 25 H 1.09000 * 109.47196 * 191.39852 * 1 2 3 26 26 H 1.09006 * 109.47064 * 311.39565 * 1 2 3 27 27 H 1.08995 * 109.47827 * 71.39468 * 1 2 3 28 28 H 1.09003 * 109.46689 * 240.00919 * 2 1 3 29 29 H 1.08994 * 109.47695 * 120.00409 * 2 1 3 30 30 H 1.08997 * 109.46979 * 194.26776 * 4 3 2 31 31 H 1.09001 * 109.46627 * 314.25904 * 4 3 2 32 32 H 0.97004 * 119.99966 * 180.02562 * 8 7 5 33 33 H 1.08990 * 109.40031 * 57.97976 * 15 13 3 34 34 H 1.09000 * 109.32262 * 298.19347 * 15 13 3 35 35 H 1.09000 * 110.03139 * 293.52518 * 16 15 13 36 36 H 1.08997 * 110.03701 * 172.03481 * 16 15 13 37 37 H 1.09005 * 110.48020 * 95.50550 * 20 18 17 38 38 H 1.08992 * 110.48200 * 218.13790 * 20 18 17 39 39 H 1.09009 * 110.70441 * 262.25585 * 21 20 18 40 40 H 1.08997 * 110.70662 * 139.02937 * 21 20 18 41 41 H 1.08998 * 109.63115 * 65.16109 * 24 22 17 42 42 H 1.08993 * 109.63348 * 185.75727 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8363 2.0083 -1.3175 5 6 0.3789 2.3329 -1.5213 6 1 -0.3321 2.1439 -0.7306 7 6 -0.0468 2.8712 -2.7171 8 7 0.8191 3.1018 -3.6797 9 14 -1.8533 3.2742 -2.9695 10 1 -2.2851 4.2685 -1.9545 11 1 -2.0494 3.8383 -4.3291 12 1 -2.6614 2.0367 -2.8252 13 6 3.4259 1.4462 0.4204 14 1 3.7865 2.4697 0.3183 15 6 4.2584 0.5280 -0.4737 16 6 5.7415 0.6158 -0.0778 17 7 5.8042 0.3601 1.3741 18 6 6.4952 -0.6006 1.9961 19 8 7.4313 -1.2094 1.5225 20 6 5.9269 -0.8103 3.3842 21 6 5.2194 0.5242 3.7105 22 6 4.9942 1.1438 2.3253 23 1 5.3108 2.1868 2.3221 24 6 3.5327 1.0187 1.8881 25 1 -0.3633 -1.0074 0.2031 26 1 -0.3633 0.6796 0.7710 27 1 -0.3634 0.3278 -0.9739 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.4236 2.9249 -1.3707 31 1 2.1671 1.3192 -2.0946 32 1 0.5196 3.4808 -4.5209 33 1 4.1427 0.8332 -1.5136 34 1 3.9129 -0.4991 -0.3571 35 1 6.1288 1.6104 -0.2990 36 1 6.3167 -0.1382 -0.6151 37 1 5.2102 -1.6316 3.3828 38 1 6.7271 -1.0024 4.0989 39 1 5.8612 1.1621 4.3182 40 1 4.2683 0.3437 4.2113 41 1 3.2065 -0.0160 1.9929 42 1 2.9094 1.6664 2.5045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172190452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:13 Heat of formation + Delta-G solvation = -48.705218 kcal Electronic energy + Delta-G solvation = -21415.933363 eV Core-core repulsion = 18394.836329 eV Total energy + Delta-G solvation = -3021.097034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.88187 -39.58175 -37.68809 -35.21148 -34.40921 -32.86118 -31.07211 -30.15693 -28.92386 -26.69412 -24.46983 -24.18960 -23.33276 -22.07695 -20.90097 -19.88724 -18.49508 -17.56067 -16.94596 -16.75189 -16.55494 -16.27307 -15.64946 -15.48388 -15.36152 -14.85514 -14.35301 -14.22908 -14.06219 -13.73143 -13.45822 -13.31686 -13.08269 -12.98721 -12.76371 -12.66842 -12.66278 -12.26540 -12.09412 -12.00799 -11.89114 -11.73414 -11.49564 -11.11769 -10.96878 -10.79415 -10.50163 -9.70844 -8.94813 -8.13406 -6.19237 1.43342 1.45255 1.51197 1.52646 2.02867 2.43628 3.19066 3.22009 3.46608 3.56436 3.83733 3.94521 4.00286 4.07114 4.21881 4.24655 4.36891 4.44878 4.52890 4.58680 4.65401 4.75046 4.78315 4.86594 4.87465 4.97160 5.07999 5.11509 5.18451 5.20774 5.21484 5.28706 5.39149 5.42726 5.58878 5.70673 5.76996 6.15589 6.23327 6.43723 6.71721 6.95252 7.12985 7.47608 8.96947 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.004656 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.027582 B = 6011.808316 C = 6314.264084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 N -0.531 5.531 4 C 0.211 3.789 5 C -0.509 4.509 6 H 0.079 0.921 7 C -0.002 4.002 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.082 3.918 14 H 0.064 0.936 15 C -0.155 4.155 16 C 0.137 3.863 17 N -0.619 5.619 18 C 0.508 3.492 19 O -0.592 6.592 20 C -0.145 4.145 21 C -0.112 4.112 22 C 0.127 3.873 23 H 0.095 0.905 24 C -0.105 4.105 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.004 0.996 29 H 0.083 0.917 30 H -0.004 1.004 31 H -0.037 1.037 32 H 0.260 0.740 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 -5.184 16.214 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 N -0.254 5.254 4 C 0.085 3.915 5 C -0.547 4.547 6 H 0.097 0.903 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.027 4.027 14 H 0.083 0.917 15 C -0.195 4.195 16 C 0.014 3.986 17 N -0.352 5.352 18 C 0.298 3.702 19 O -0.473 6.473 20 C -0.185 4.185 21 C -0.149 4.149 22 C 0.024 3.976 23 H 0.113 0.887 24 C -0.143 4.143 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.022 0.978 29 H 0.101 0.899 30 H 0.014 0.986 31 H -0.019 1.019 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.133 0.867 41 H 0.091 0.909 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.218 -5.128 16.053 17.962 hybrid contribution -0.221 -0.040 -1.990 2.002 sum 5.997 -5.168 14.063 16.138 Atomic orbital electron populations 1.21937 0.95239 1.00313 1.02467 1.21927 0.96438 0.88873 0.98836 1.62357 1.16648 1.17098 1.29280 1.19369 0.96152 0.91861 0.84162 1.21707 0.94293 1.39350 0.99373 0.90346 1.25857 1.01960 0.96108 0.95992 1.70093 1.36096 1.46188 1.05751 0.85583 0.80157 0.78861 0.76946 1.19272 1.21585 1.19234 1.21783 0.87404 0.98144 0.95341 0.91733 1.22568 0.95761 1.01010 1.00162 1.21633 0.95652 1.01934 0.79368 1.48847 1.45047 1.34138 1.07150 1.21587 0.80913 0.77782 0.89949 1.90674 1.29212 1.53233 1.74187 1.22419 1.02512 1.00888 0.92704 1.22388 1.03615 0.94724 0.94200 1.22023 0.89977 0.96418 0.89211 0.88741 1.22002 0.95673 1.02683 0.93975 0.92165 0.92616 0.93155 0.97765 0.89923 0.98617 1.01920 0.93136 0.93059 0.92130 0.90260 0.90691 0.86569 0.86854 0.87781 0.86688 0.90936 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.52 71.98 0.61 -4.49 16 2 C 0.07 2.39 4.40 86.30 0.38 2.77 16 3 N -0.53 -20.89 4.42 -875.39 -3.87 -24.76 16 4 C 0.21 10.72 4.07 85.55 0.35 11.07 16 5 C -0.51 -27.46 7.08 25.60 0.18 -27.28 16 6 H 0.08 4.07 5.66 -2.91 -0.02 4.05 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 8 N -0.94 -56.18 13.29 21.45 0.28 -55.90 16 9 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 C 0.08 2.60 2.06 44.94 0.09 2.69 16 14 H 0.06 2.18 7.84 -2.39 -0.02 2.16 16 15 C -0.16 -4.91 4.67 30.79 0.14 -4.77 16 16 C 0.14 3.78 6.96 86.43 0.60 4.38 16 17 N -0.62 -15.15 2.94 -791.06 -2.32 -17.48 16 18 C 0.51 13.28 8.03 88.07 0.71 13.99 16 19 O -0.59 -21.04 17.79 -3.05 -0.05 -21.10 16 20 C -0.15 -2.19 6.91 30.61 0.21 -1.98 16 21 C -0.11 -1.23 6.71 31.25 0.21 -1.02 16 22 C 0.13 2.30 3.58 44.96 0.16 2.46 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 C -0.11 -2.31 4.53 30.70 0.14 -2.17 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.97 7.82 -2.38 -0.02 1.95 16 27 H 0.05 2.17 5.76 -2.39 -0.01 2.16 16 28 H 0.00 0.16 7.01 -2.39 -0.02 0.14 16 29 H 0.08 2.41 5.93 -2.39 -0.01 2.39 16 30 H 0.00 -0.24 7.77 -2.39 -0.02 -0.26 16 31 H -0.04 -2.09 7.06 -2.39 -0.02 -2.10 16 32 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.05 1.92 6.95 -2.39 -0.02 1.90 16 34 H 0.06 1.95 6.81 -2.39 -0.02 1.93 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.20 7.96 -2.39 -0.02 2.18 16 37 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.11 0.83 7.82 -2.39 -0.02 0.82 16 41 H 0.07 1.56 6.36 -2.39 -0.02 1.54 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -69.48 318.31 1.31 -68.17 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.99 Total: 9.51 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 4.25 Total: -4.01 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -5.91 Total: -98.13 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.10 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -69.48 1.31 -68.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172190452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.461 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds