Wall clock time and date at job start Mon Mar 30 2020 01:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46758 * 124.35005 * 2 1 4 4 C 1.54478 * 105.47675 * 163.24944 * 3 2 1 5 5 C 1.54634 * 101.76249 * 25.41345 * 4 3 2 6 6 H 1.09005 * 110.59340 * 93.93528 * 5 4 3 7 7 N 1.46899 * 110.48880 * 216.52535 * 5 4 3 8 8 C 1.46904 * 110.99952 * 270.83231 * 7 5 4 9 9 C 1.53002 * 109.46998 * 274.20049 * 8 7 5 10 10 C 1.53000 * 109.47415 * 300.00173 * 9 8 7 11 11 C 1.53000 * 109.46662 * 300.00234 * 10 9 8 12 12 C 1.50702 * 109.46854 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00126 * 239.99900 * 12 11 10 14 14 C 1.37883 * 120.00087 * 59.99760 * 12 11 10 15 15 N 1.31512 * 119.99969 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00189 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46778 * 89.99766 * 16 14 12 18 18 H 1.48494 * 109.47056 * 209.99982 * 16 14 12 19 19 H 1.48501 * 109.47089 * 330.00203 * 16 14 12 20 20 C 1.52992 * 109.47580 * 60.00074 * 11 10 9 21 21 C 1.52996 * 109.47259 * 154.20123 * 8 7 5 22 22 C 1.34424 * 124.34800 * 180.29924 * 2 1 3 23 23 O 1.21275 * 124.94196 * 0.16408 * 22 2 1 24 24 H 1.09004 * 109.47266 * 179.72309 * 1 2 3 25 25 H 1.08996 * 109.47212 * 299.72589 * 1 2 3 26 26 H 1.09000 * 109.47201 * 59.72344 * 1 2 3 27 27 H 1.08997 * 110.24851 * 282.25021 * 3 2 1 28 28 H 1.09005 * 110.24987 * 44.25131 * 3 2 1 29 29 H 1.09001 * 110.97195 * 267.30179 * 4 3 2 30 30 H 1.08999 * 111.00692 * 143.54955 * 4 3 2 31 31 H 1.00896 * 111.00013 * 146.88321 * 7 5 4 32 32 H 1.08996 * 109.47443 * 34.19826 * 8 7 5 33 33 H 1.09007 * 109.47086 * 59.99791 * 9 8 7 34 34 H 1.09001 * 109.47340 * 179.97438 * 9 8 7 35 35 H 1.08991 * 109.47540 * 179.97438 * 10 9 8 36 36 H 1.09006 * 109.46709 * 59.99840 * 10 9 8 37 37 H 1.08997 * 109.46976 * 299.99280 * 11 10 9 38 38 H 0.96998 * 120.00222 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.47439 * 179.97438 * 20 11 10 40 40 H 1.08997 * 109.47614 * 59.99597 * 20 11 10 41 41 H 1.08997 * 109.47154 * 179.97438 * 21 8 7 42 42 H 1.09000 * 109.47454 * 300.00170 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7026 0.7476 0.4291 5 6 3.6898 -0.7379 -0.0003 6 1 4.1161 -0.8526 -0.9969 7 7 4.4250 -1.5600 0.9700 8 6 5.8488 -1.6429 0.6178 9 6 6.0615 -2.7821 -0.3813 10 6 5.6141 -4.1028 0.2483 11 6 6.4369 -4.3707 1.5101 12 6 5.9958 -5.6713 2.1306 13 1 5.6033 -5.6839 3.1367 14 6 6.0932 -6.8452 1.4139 15 7 6.5707 -6.8297 0.1886 16 14 5.5471 -8.4574 2.1832 17 1 4.1103 -8.6859 1.8861 18 1 6.3521 -9.5716 1.6214 19 1 5.7449 -8.3962 3.6537 20 6 6.2241 -3.2317 2.5092 21 6 6.6716 -1.9109 1.8795 22 6 2.2234 -1.1098 -0.0058 23 8 1.7946 -2.2442 -0.0146 24 1 -0.3634 -1.0277 -0.0050 25 1 -0.3633 0.5095 0.8924 26 1 -0.3633 0.5181 -0.8875 27 1 2.3268 1.6455 -0.9993 28 1 1.9012 1.9365 0.7136 29 1 3.8326 0.8408 1.5073 30 1 4.4754 1.3011 -0.1042 31 1 4.0175 -2.4798 1.0469 32 1 6.1676 -0.7021 0.1692 33 1 5.4753 -2.5911 -1.2802 34 1 7.1179 -2.8433 -0.6430 35 1 5.7652 -4.9142 -0.4635 36 1 4.5576 -4.0412 0.5096 37 1 7.4932 -4.4323 1.2488 38 1 6.6396 -7.6555 -0.3156 39 1 6.8099 -3.4228 3.4083 40 1 5.1677 -3.1701 2.7705 41 1 7.7279 -1.9729 1.6181 42 1 6.5200 -1.0994 2.5913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:05 Heat of formation + Delta-G solvation = -43.436804 kcal Electronic energy + Delta-G solvation = -21312.779891 eV Core-core repulsion = 18291.911312 eV Total energy + Delta-G solvation = -3020.868579 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51049 -38.22245 -36.36104 -34.40887 -32.56392 -30.83927 -29.56175 -28.62514 -27.00634 -25.56057 -24.44539 -21.82139 -21.41980 -20.52208 -19.48894 -18.06643 -16.77095 -16.44567 -16.23090 -15.96689 -14.86475 -14.53015 -14.20167 -13.84386 -13.73975 -13.48886 -13.03280 -12.89989 -12.61603 -12.45373 -12.28778 -12.03467 -11.87490 -11.55813 -11.25727 -11.18507 -11.06456 -10.74553 -10.56406 -10.09525 -9.97199 -9.85306 -9.65461 -9.22843 -8.85068 -8.80920 -8.56179 -8.19203 -8.02520 -5.88314 -3.93688 2.60181 2.94190 3.38181 3.44379 3.47720 4.29536 4.39939 4.53136 4.56339 4.94787 5.06810 5.16465 5.24897 5.32133 5.40981 5.42372 5.52284 5.57813 5.68220 5.74643 5.81120 6.01313 6.22394 6.29308 6.42608 6.44388 6.52703 6.64723 6.74545 6.86284 7.00519 7.05619 7.28836 7.30321 7.42213 7.61556 7.79833 7.85380 8.13472 8.19827 8.26264 8.58883 9.10602 9.70764 11.17210 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024163 B = 0.005219 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.530099 B = 5364.220728 C = 6014.142398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.626 5.626 3 C 0.105 3.895 4 C -0.122 4.122 5 C 0.053 3.947 6 H 0.081 0.919 7 N -0.665 5.665 8 C 0.092 3.908 9 C -0.149 4.149 10 C -0.109 4.109 11 C 0.049 3.951 12 C -0.509 4.509 13 H 0.053 0.947 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.108 4.108 21 C -0.101 4.101 22 C 0.517 3.483 23 O -0.519 6.519 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.363 0.637 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.035 0.965 37 H 0.023 0.977 38 H 0.258 0.742 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 18.486 -2.125 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.362 5.362 3 C -0.019 4.019 4 C -0.160 4.160 5 C -0.061 4.061 6 H 0.099 0.901 7 N -0.303 5.303 8 C -0.017 4.017 9 C -0.188 4.188 10 C -0.148 4.148 11 C 0.031 3.969 12 C -0.548 4.548 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.146 4.146 21 C -0.139 4.139 22 C 0.304 3.696 23 O -0.393 6.393 24 H 0.101 0.899 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.188 0.812 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.881 18.236 -1.822 19.576 hybrid contribution -0.428 -1.429 -0.552 1.590 sum -7.308 16.807 -2.374 18.480 Atomic orbital electron populations 1.21528 0.78294 1.03782 1.01144 1.48071 1.06340 1.07489 1.74340 1.22079 0.91033 0.87297 1.01465 1.22729 0.95252 0.94333 1.03726 1.22183 0.91435 0.95314 0.97174 0.90095 1.60914 1.02769 1.21315 1.45274 1.21585 0.87245 0.97010 0.95866 1.22269 1.01160 0.98088 0.97241 1.21606 0.97974 0.94408 1.00766 1.18647 0.95714 0.91663 0.90905 1.21260 1.41557 0.91905 1.00054 0.92828 1.24961 0.95266 0.98870 0.94907 1.69874 1.46403 1.26988 1.09892 0.86664 0.78614 0.83645 0.79500 1.20766 1.21389 1.19995 1.21589 1.00152 0.94095 0.98766 1.21502 0.97879 0.98670 0.95891 1.20989 0.89393 0.84389 0.74872 1.90767 1.78336 1.20976 1.49215 0.89934 0.92167 0.92342 0.91389 0.90456 0.88728 0.89662 0.81160 0.92027 0.94390 0.92236 0.89055 0.94654 0.95915 0.93227 0.93838 0.92847 0.92601 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.14 59.85 0.67 1.56 16 2 N -0.63 -7.40 3.33 -180.30 -0.60 -8.00 16 3 C 0.10 0.87 7.35 -3.13 -0.02 0.85 16 4 C -0.12 -1.19 6.84 -25.10 -0.17 -1.36 16 5 C 0.05 0.74 3.01 -67.72 -0.20 0.53 16 6 H 0.08 1.12 7.26 -51.93 -0.38 0.74 16 7 N -0.67 -11.13 5.57 -99.75 -0.56 -11.68 16 8 C 0.09 1.54 2.72 -67.71 -0.18 1.35 16 9 C -0.15 -2.88 5.51 -26.73 -0.15 -3.03 16 10 C -0.11 -2.63 4.73 -26.73 -0.13 -2.76 16 11 C 0.05 1.24 2.10 -91.77 -0.19 1.05 16 12 C -0.51 -14.42 8.56 -34.44 -0.29 -14.71 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -26.18 11.32 55.43 0.63 -25.56 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 20 C -0.11 -2.31 4.90 -26.73 -0.13 -2.44 16 21 C -0.10 -1.78 5.64 -26.73 -0.15 -1.93 16 22 C 0.52 8.19 7.59 -10.86 -0.08 8.10 16 23 O -0.52 -10.56 16.81 5.56 0.09 -10.46 16 24 H 0.08 0.92 7.53 -51.93 -0.39 0.53 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.99 8.09 -51.93 -0.42 0.56 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.36 7.31 4.89 -39.29 -0.19 7.12 16 32 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 33 H 0.04 0.70 7.54 -51.93 -0.39 0.31 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 36 H 0.03 0.88 6.25 -51.93 -0.32 0.56 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 1.17 7.23 -51.93 -0.38 0.79 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -31.81 323.45 -8.68 -40.49 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.96 Total: 4.40 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.14 Total: -11.15 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.53 Total: -45.24 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.81 -8.68 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.946 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds