Wall clock time and date at job start Mon Mar 30 2020 01:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46758 * 124.35005 * 2 1 4 4 C 1.54478 * 105.47675 * 163.24944 * 3 2 1 5 5 C 1.54634 * 101.76249 * 25.41345 * 4 3 2 6 6 H 1.09005 * 110.59340 * 93.93528 * 5 4 3 7 7 N 1.46899 * 110.48880 * 216.52535 * 5 4 3 8 8 C 1.46904 * 110.99952 * 270.83231 * 7 5 4 9 9 C 1.53002 * 109.46998 * 274.20049 * 8 7 5 10 10 C 1.53000 * 109.47415 * 300.00173 * 9 8 7 11 11 C 1.53000 * 109.46662 * 300.00234 * 10 9 8 12 12 C 1.50702 * 109.46854 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00126 * 239.99900 * 12 11 10 14 14 C 1.37883 * 120.00087 * 59.99760 * 12 11 10 15 15 N 1.31512 * 119.99969 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00189 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46778 * 89.99766 * 16 14 12 18 18 H 1.48494 * 109.47056 * 209.99982 * 16 14 12 19 19 H 1.48501 * 109.47089 * 330.00203 * 16 14 12 20 20 C 1.52992 * 109.47580 * 60.00074 * 11 10 9 21 21 C 1.52996 * 109.47259 * 154.20123 * 8 7 5 22 22 C 1.34424 * 124.34800 * 180.29924 * 2 1 3 23 23 O 1.21275 * 124.94196 * 0.16408 * 22 2 1 24 24 H 1.09004 * 109.47266 * 179.72309 * 1 2 3 25 25 H 1.08996 * 109.47212 * 299.72589 * 1 2 3 26 26 H 1.09000 * 109.47201 * 59.72344 * 1 2 3 27 27 H 1.08997 * 110.24851 * 282.25021 * 3 2 1 28 28 H 1.09005 * 110.24987 * 44.25131 * 3 2 1 29 29 H 1.09001 * 110.97195 * 267.30179 * 4 3 2 30 30 H 1.08999 * 111.00692 * 143.54955 * 4 3 2 31 31 H 1.00896 * 111.00013 * 146.88321 * 7 5 4 32 32 H 1.08996 * 109.47443 * 34.19826 * 8 7 5 33 33 H 1.09007 * 109.47086 * 59.99791 * 9 8 7 34 34 H 1.09001 * 109.47340 * 179.97438 * 9 8 7 35 35 H 1.08991 * 109.47540 * 179.97438 * 10 9 8 36 36 H 1.09006 * 109.46709 * 59.99840 * 10 9 8 37 37 H 1.08997 * 109.46976 * 299.99280 * 11 10 9 38 38 H 0.96998 * 120.00222 * 179.97438 * 15 14 12 39 39 H 1.08999 * 109.47439 * 179.97438 * 20 11 10 40 40 H 1.08997 * 109.47614 * 59.99597 * 20 11 10 41 41 H 1.08997 * 109.47154 * 179.97438 * 21 8 7 42 42 H 1.09000 * 109.47454 * 300.00170 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7026 0.7476 0.4291 5 6 3.6898 -0.7379 -0.0003 6 1 4.1161 -0.8526 -0.9969 7 7 4.4250 -1.5600 0.9700 8 6 5.8488 -1.6429 0.6178 9 6 6.0615 -2.7821 -0.3813 10 6 5.6141 -4.1028 0.2483 11 6 6.4369 -4.3707 1.5101 12 6 5.9958 -5.6713 2.1306 13 1 5.6033 -5.6839 3.1367 14 6 6.0932 -6.8452 1.4139 15 7 6.5707 -6.8297 0.1886 16 14 5.5471 -8.4574 2.1832 17 1 4.1103 -8.6859 1.8861 18 1 6.3521 -9.5716 1.6214 19 1 5.7449 -8.3962 3.6537 20 6 6.2241 -3.2317 2.5092 21 6 6.6716 -1.9109 1.8795 22 6 2.2234 -1.1098 -0.0058 23 8 1.7946 -2.2442 -0.0146 24 1 -0.3634 -1.0277 -0.0050 25 1 -0.3633 0.5095 0.8924 26 1 -0.3633 0.5181 -0.8875 27 1 2.3268 1.6455 -0.9993 28 1 1.9012 1.9365 0.7136 29 1 3.8326 0.8408 1.5073 30 1 4.4754 1.3011 -0.1042 31 1 4.0175 -2.4798 1.0469 32 1 6.1676 -0.7021 0.1692 33 1 5.4753 -2.5911 -1.2802 34 1 7.1179 -2.8433 -0.6430 35 1 5.7652 -4.9142 -0.4635 36 1 4.5576 -4.0412 0.5096 37 1 7.4932 -4.4323 1.2488 38 1 6.6396 -7.6555 -0.3156 39 1 6.8099 -3.4228 3.4083 40 1 5.1677 -3.1701 2.7705 41 1 7.7279 -1.9729 1.6181 42 1 6.5200 -1.0994 2.5913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:04 Heat of formation + Delta-G solvation = -64.939345 kcal Electronic energy + Delta-G solvation = -21313.712311 eV Core-core repulsion = 18291.911312 eV Total energy + Delta-G solvation = -3021.800999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58612 -39.75936 -37.50347 -35.93945 -34.27371 -32.17681 -31.25657 -30.10011 -27.96665 -26.79990 -26.16500 -23.22652 -22.81660 -22.09074 -20.55972 -19.61929 -18.40107 -17.79779 -17.50184 -17.12799 -16.60149 -15.93025 -15.45241 -15.33069 -14.95728 -14.72042 -14.54165 -14.18745 -13.96040 -13.70159 -13.49676 -13.35083 -13.13481 -13.04426 -12.87506 -12.71652 -12.51183 -12.35061 -12.04443 -11.87947 -11.71244 -11.67807 -11.21381 -10.79955 -10.66949 -10.52376 -10.31989 -9.72340 -9.35110 -8.07828 -6.21075 1.36699 1.38556 1.44627 1.47966 2.06495 2.42253 3.18116 3.28410 3.33359 3.72679 4.06227 4.11752 4.14094 4.25018 4.33182 4.37590 4.48005 4.63464 4.64509 4.70310 4.74217 4.84487 4.86314 4.93565 4.99482 5.08084 5.09669 5.26737 5.27241 5.33159 5.44594 5.51715 5.58777 5.64195 5.71980 6.02988 6.07147 6.14808 6.23869 6.31214 6.44761 6.92038 7.10259 7.46495 8.95591 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024163 B = 0.005219 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.530099 B = 5364.220728 C = 6014.142398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.621 5.621 3 C 0.102 3.898 4 C -0.110 4.110 5 C 0.046 3.954 6 H 0.084 0.916 7 N -0.668 5.668 8 C 0.101 3.899 9 C -0.141 4.141 10 C -0.098 4.098 11 C 0.047 3.953 12 C -0.534 4.534 13 H 0.046 0.954 14 C 0.011 3.989 15 N -0.917 5.917 16 Si 0.948 3.052 17 H -0.281 1.281 18 H -0.280 1.280 19 H -0.267 1.267 20 C -0.100 4.100 21 C -0.095 4.095 22 C 0.500 3.500 23 O -0.583 6.583 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.340 0.660 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.016 0.984 37 H -0.005 1.005 38 H 0.258 0.742 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 21.787 -1.967 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.354 5.354 3 C -0.019 4.019 4 C -0.148 4.148 5 C -0.067 4.067 6 H 0.101 0.899 7 N -0.302 5.302 8 C -0.009 4.009 9 C -0.180 4.180 10 C -0.137 4.137 11 C 0.029 3.971 12 C -0.572 4.572 13 H 0.065 0.935 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.774 3.226 17 H -0.208 1.208 18 H -0.206 1.206 19 H -0.191 1.191 20 C -0.138 4.138 21 C -0.133 4.133 22 C 0.287 3.713 23 O -0.463 6.463 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.134 0.866 31 H 0.161 0.839 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.013 0.987 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.011 21.624 -1.658 22.793 hybrid contribution -0.443 -2.424 -0.616 2.541 sum -7.454 19.200 -2.275 20.721 Atomic orbital electron populations 1.21718 0.77126 1.02850 1.03625 1.48297 1.07412 1.07653 1.72059 1.22408 0.89562 0.86073 1.03873 1.22761 0.97174 0.90919 1.03944 1.22408 0.89908 0.97470 0.96910 0.89875 1.60985 1.02812 1.20029 1.46395 1.21586 0.87381 0.97287 0.94612 1.22173 1.00973 0.96666 0.98154 1.21333 0.96780 0.95998 0.99562 1.18613 0.93849 0.92308 0.92334 1.21677 1.41699 0.93825 1.00019 0.93539 1.25723 0.95421 1.02163 0.95398 1.70016 1.47112 1.27671 1.10884 0.85705 0.78032 0.79811 0.79036 1.20753 1.20558 1.19142 1.21434 0.99566 0.95018 0.97783 1.21468 0.98285 0.96863 0.96643 1.21462 0.90809 0.84389 0.74597 1.90724 1.79457 1.23602 1.52514 0.92648 0.89838 0.89576 0.88742 0.87638 0.89048 0.86550 0.83884 0.87891 0.93598 0.92190 0.93083 0.96500 0.98673 0.93259 0.94167 0.93900 0.91883 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 11.14 127.77 1.42 2.93 16 2 N -0.62 -13.30 3.33 -842.93 -2.81 -16.11 16 3 C 0.10 1.24 7.35 86.83 0.64 1.88 16 4 C -0.11 -1.66 6.84 31.65 0.22 -1.44 16 5 C 0.05 1.20 3.01 44.91 0.14 1.34 16 6 H 0.08 2.12 7.26 -2.38 -0.02 2.10 16 7 N -0.67 -21.62 5.57 -469.49 -2.62 -24.24 16 8 C 0.10 3.13 2.72 44.91 0.12 3.26 16 9 C -0.14 -5.43 5.51 30.60 0.17 -5.26 16 10 C -0.10 -4.95 4.73 30.59 0.14 -4.81 16 11 C 0.05 2.48 2.10 -11.54 -0.02 2.46 16 12 C -0.53 -31.41 8.56 25.60 0.22 -31.19 16 13 H 0.05 2.72 7.74 -2.91 -0.02 2.69 16 14 C 0.01 0.65 5.30 84.66 0.45 1.10 16 15 N -0.92 -55.85 11.32 21.45 0.24 -55.60 16 16 Si 0.95 46.52 29.54 68.60 2.03 48.55 16 17 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 20 C -0.10 -4.31 4.90 30.59 0.15 -4.16 16 21 C -0.09 -3.12 5.64 30.60 0.17 -2.94 16 22 C 0.50 15.72 7.59 87.90 0.67 16.38 16 23 O -0.58 -24.99 16.81 -3.01 -0.05 -25.04 16 24 H 0.05 1.26 7.53 -2.38 -0.02 1.24 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 30 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.34 14.06 4.89 -89.70 -0.44 13.62 16 32 H 0.10 2.45 7.82 -2.39 -0.02 2.44 16 33 H 0.05 1.68 7.54 -2.38 -0.02 1.66 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 2.96 6.07 -2.39 -0.01 2.94 16 36 H 0.02 0.88 6.25 -2.38 -0.01 0.87 16 37 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.04 1.91 7.23 -2.39 -0.02 1.89 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -74.70 323.45 1.83 -72.87 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.56 Total: 20.05 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 4.48 Total: -20.46 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -5.18 Total: -95.96 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -74.70 1.83 -72.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.926 kcal (2) G-P(sol) polarization free energy of solvation -74.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds