Wall clock time and date at job start Mon Mar 30 2020 01:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99748 * 2 1 4 4 N 1.34778 * 119.99995 * 180.02562 * 2 1 3 5 5 C 1.46505 * 119.99793 * 179.97438 * 4 2 1 6 6 C 1.53510 * 114.16991 * 204.99690 * 5 4 2 7 7 N 1.47481 * 87.92920 * 220.13979 * 6 5 4 8 8 C 1.46905 * 110.99601 * 138.70702 * 7 6 5 9 9 C 1.53006 * 109.46636 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.46814 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47007 * 59.99839 * 10 9 8 12 12 C 1.50706 * 109.47348 * 59.99952 * 11 10 9 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46683 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47426 * 119.99743 * 16 14 12 19 19 H 1.48501 * 109.46833 * 239.99986 * 16 14 12 20 20 C 1.52998 * 109.47322 * 300.00199 * 11 10 9 21 21 C 1.52992 * 109.47451 * 59.99853 * 20 11 10 22 22 C 1.47472 * 87.83926 * 27.01271 * 7 6 5 23 23 H 1.09002 * 109.47029 * 269.98998 * 1 2 3 24 24 H 1.08990 * 109.47709 * 29.99585 * 1 2 3 25 25 H 1.09002 * 109.46845 * 150.00069 * 1 2 3 26 26 H 0.96995 * 120.00339 * 359.97438 * 4 2 1 27 27 H 1.09007 * 113.25412 * 337.95094 * 5 4 2 28 28 H 1.08998 * 113.47363 * 105.37628 * 6 5 4 29 29 H 1.09004 * 113.53036 * 334.91274 * 6 5 4 30 30 H 1.09002 * 109.47028 * 299.99500 * 8 7 6 31 31 H 1.08995 * 109.47637 * 60.00034 * 9 8 7 32 32 H 1.09002 * 109.47078 * 299.99560 * 9 8 7 33 33 H 1.09002 * 109.46711 * 300.00066 * 10 9 8 34 34 H 1.09000 * 109.47136 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47454 * 180.02562 * 11 10 9 36 36 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.47120 * 180.02562 * 20 11 10 38 38 H 1.09002 * 109.46792 * 300.00022 * 20 11 10 39 39 H 1.09000 * 109.47344 * 180.02562 * 21 20 11 40 40 H 1.09002 * 109.46985 * 60.00287 * 21 20 11 41 41 H 1.09005 * 113.47762 * 87.75447 * 22 7 6 42 42 H 1.09006 * 113.47815 * 218.22130 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.2743 -2.4363 -0.5934 7 7 5.2808 -2.3759 0.4828 8 6 5.5555 -3.7143 1.0225 9 6 6.6023 -3.6112 2.1335 10 6 6.8880 -5.0051 2.6961 11 6 7.4167 -5.9073 1.5792 12 6 8.6874 -5.3214 1.0193 13 1 9.0784 -4.3978 1.4199 14 6 9.3535 -5.9672 -0.0005 15 7 8.8802 -7.0948 -0.4845 16 14 10.9288 -5.2414 -0.6940 17 1 11.2466 -3.9775 0.0177 18 1 12.0418 -6.2070 -0.5098 19 1 10.7500 -4.9624 -2.1416 20 6 6.3699 -6.0103 0.4681 21 6 6.0843 -4.6165 -0.0944 22 6 4.2792 -1.6703 1.3037 23 1 -0.3633 -0.0002 1.0277 24 1 -0.3634 0.8899 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6960 -2.0072 -0.0005 27 1 4.0761 -0.2388 -0.3770 28 1 4.6935 -2.2894 -1.5888 29 1 3.6267 -3.3112 -0.5337 30 1 4.6365 -4.1386 1.4269 31 1 6.2255 -2.9688 2.9294 32 1 7.5212 -3.1870 1.7287 33 1 5.9689 -5.4288 3.1009 34 1 7.6341 -4.9318 3.4873 35 1 7.6198 -6.9004 1.9798 36 1 9.3490 -7.5494 -1.2019 37 1 6.7465 -6.6534 -0.3273 38 1 5.4509 -6.4340 0.8731 39 1 5.3382 -4.6899 -0.8856 40 1 7.0033 -4.1928 -0.4993 41 1 3.6323 -2.3402 1.8703 42 1 4.7026 -0.8742 1.9162 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:33 Heat of formation + Delta-G solvation = -18.521217 kcal Electronic energy + Delta-G solvation = -20872.188341 eV Core-core repulsion = 17852.400183 eV Total energy + Delta-G solvation = -3019.788158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68536 -39.14210 -37.05682 -34.10709 -32.40874 -30.57752 -29.73314 -29.22537 -25.97646 -25.82899 -24.34078 -21.36170 -21.23200 -20.60286 -19.82338 -18.68754 -17.05153 -16.73269 -15.85157 -15.54902 -15.11949 -14.76716 -14.41272 -14.09020 -13.83481 -13.27727 -13.02839 -12.87851 -12.72025 -12.65515 -12.41477 -12.18205 -11.47196 -11.43534 -11.03998 -10.91217 -10.80481 -10.73838 -10.48380 -10.38319 -10.07709 -10.07160 -9.59126 -9.23842 -9.10663 -8.84189 -8.71418 -8.53375 -8.23409 -5.93717 -3.97240 2.42544 2.99714 3.32920 3.41522 3.46235 4.22212 4.44231 4.49003 4.60574 4.88042 4.92828 5.10033 5.22503 5.31693 5.37523 5.47970 5.49811 5.58736 5.74115 5.84845 5.93984 6.01154 6.15961 6.27195 6.37949 6.46773 6.53693 6.59789 6.71489 6.81243 6.84795 7.08734 7.21712 7.28827 7.34650 7.50865 7.62207 7.77737 7.95000 8.02678 8.17118 8.52154 9.05300 9.66215 11.12497 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032805 B = 0.004141 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.324206 B = 6759.927216 C = 6969.052571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.547 6.547 4 N -0.719 5.719 5 C 0.113 3.887 6 C -0.005 4.005 7 N -0.458 5.458 8 C 0.062 3.938 9 C -0.092 4.092 10 C -0.106 4.106 11 C 0.043 3.957 12 C -0.498 4.498 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.884 3.116 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.106 4.106 21 C -0.093 4.093 22 C -0.014 4.014 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.401 0.599 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.024 0.976 36 H 0.257 0.743 37 H 0.092 0.908 38 H 0.011 0.989 39 H 0.030 0.970 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.951 7.957 0.873 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.424 6.424 4 N -0.371 5.371 5 C 0.007 3.993 6 C -0.134 4.134 7 N -0.181 5.181 8 C -0.046 4.046 9 C -0.130 4.130 10 C -0.145 4.145 11 C 0.025 3.975 12 C -0.536 4.536 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.712 3.288 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.144 4.144 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.235 0.765 27 H 0.144 0.856 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.029 0.971 39 H 0.049 0.951 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.785 8.856 0.629 17.246 hybrid contribution -0.124 -0.676 -0.220 0.722 sum -14.909 8.179 0.410 17.010 Atomic orbital electron populations 1.21893 0.91789 1.04847 1.04754 1.20855 0.90583 0.83615 0.75194 1.90733 1.70837 1.31420 1.49447 1.46109 1.07160 1.08724 1.75112 1.22765 0.78827 1.00314 0.97345 1.24124 0.94142 0.96085 0.99088 1.68988 1.27219 1.16758 1.05117 1.22275 0.97501 0.87719 0.97091 1.21333 0.99052 0.97377 0.95230 1.21562 0.98235 0.95542 0.99119 1.18694 0.93551 0.94511 0.90756 1.21197 1.07005 1.07884 1.17496 0.92543 1.24927 0.97290 0.94887 0.96890 1.69879 1.39328 1.16603 1.27487 0.86654 0.83913 0.79244 0.78947 1.19774 1.21266 1.21166 1.21505 0.96050 0.94984 1.01899 1.21437 1.00336 0.96496 0.94833 1.24330 0.94095 0.99298 0.96692 0.88875 0.88915 0.90191 0.76461 0.85602 0.89172 0.91164 0.94854 0.94792 0.90288 0.95122 0.93338 0.95817 0.93285 0.88963 0.97053 0.95137 0.90187 0.91448 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.30 36.01 0.37 -0.68 16 2 C 0.51 5.43 7.94 -10.99 -0.09 5.35 16 3 O -0.55 -8.46 16.69 5.55 0.09 -8.36 16 4 N -0.72 -6.84 5.39 -53.54 -0.29 -7.13 16 5 C 0.11 1.37 4.59 -67.72 -0.31 1.06 16 6 C 0.00 -0.06 6.22 -7.55 -0.05 -0.11 16 7 N -0.46 -7.25 6.15 -236.60 -1.45 -8.70 16 8 C 0.06 1.11 1.60 -67.71 -0.11 1.00 16 9 C -0.09 -1.77 5.19 -26.72 -0.14 -1.91 16 10 C -0.11 -2.19 5.41 -26.73 -0.14 -2.33 16 11 C 0.04 1.05 2.58 -91.77 -0.24 0.81 16 12 C -0.50 -13.20 6.61 -34.44 -0.23 -13.43 16 13 H 0.06 1.51 6.71 -52.49 -0.35 1.16 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -25.11 11.34 55.43 0.63 -24.48 16 16 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.11 -2.42 5.24 -26.74 -0.14 -2.56 16 21 C -0.09 -1.90 4.88 -26.74 -0.13 -2.03 16 22 C -0.01 -0.18 7.31 -7.55 -0.06 -0.24 16 23 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.40 2.69 8.76 -40.82 -0.36 2.33 16 27 H 0.13 1.75 7.45 -51.93 -0.39 1.36 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.84 7.65 -51.93 -0.40 0.44 16 30 H 0.03 0.57 7.52 -51.93 -0.39 0.18 16 31 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 32 H 0.08 1.70 6.62 -51.93 -0.34 1.36 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.09 2.38 6.09 -51.93 -0.32 2.07 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.03 0.56 7.03 -51.93 -0.36 0.20 16 40 H 0.08 1.88 7.22 -51.93 -0.37 1.50 16 41 H 0.07 0.84 7.54 -51.93 -0.39 0.44 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -30.49 325.81 -9.52 -40.01 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.03 Total: 0.98 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.35 Total: -13.52 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -1.11 Total: -40.31 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.49 -9.52 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.488 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds