Wall clock time and date at job start Mon Mar 30 2020 01:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99748 * 2 1 4 4 N 1.34778 * 119.99995 * 180.02562 * 2 1 3 5 5 C 1.46505 * 119.99793 * 179.97438 * 4 2 1 6 6 C 1.53510 * 114.16991 * 204.99690 * 5 4 2 7 7 N 1.47481 * 87.92920 * 220.13979 * 6 5 4 8 8 C 1.46905 * 110.99601 * 138.70702 * 7 6 5 9 9 C 1.53006 * 109.46636 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.46814 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47007 * 59.99839 * 10 9 8 12 12 C 1.50706 * 109.47348 * 59.99952 * 11 10 9 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46683 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47426 * 119.99743 * 16 14 12 19 19 H 1.48501 * 109.46833 * 239.99986 * 16 14 12 20 20 C 1.52998 * 109.47322 * 300.00199 * 11 10 9 21 21 C 1.52992 * 109.47451 * 59.99853 * 20 11 10 22 22 C 1.47472 * 87.83926 * 27.01271 * 7 6 5 23 23 H 1.09002 * 109.47029 * 269.98998 * 1 2 3 24 24 H 1.08990 * 109.47709 * 29.99585 * 1 2 3 25 25 H 1.09002 * 109.46845 * 150.00069 * 1 2 3 26 26 H 0.96995 * 120.00339 * 359.97438 * 4 2 1 27 27 H 1.09007 * 113.25412 * 337.95094 * 5 4 2 28 28 H 1.08998 * 113.47363 * 105.37628 * 6 5 4 29 29 H 1.09004 * 113.53036 * 334.91274 * 6 5 4 30 30 H 1.09002 * 109.47028 * 299.99500 * 8 7 6 31 31 H 1.08995 * 109.47637 * 60.00034 * 9 8 7 32 32 H 1.09002 * 109.47078 * 299.99560 * 9 8 7 33 33 H 1.09002 * 109.46711 * 300.00066 * 10 9 8 34 34 H 1.09000 * 109.47136 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47454 * 180.02562 * 11 10 9 36 36 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.47120 * 180.02562 * 20 11 10 38 38 H 1.09002 * 109.46792 * 300.00022 * 20 11 10 39 39 H 1.09000 * 109.47344 * 180.02562 * 21 20 11 40 40 H 1.09002 * 109.46985 * 60.00287 * 21 20 11 41 41 H 1.09005 * 113.47762 * 87.75447 * 22 7 6 42 42 H 1.09006 * 113.47815 * 218.22130 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.2743 -2.4363 -0.5934 7 7 5.2808 -2.3759 0.4828 8 6 5.5555 -3.7143 1.0225 9 6 6.6023 -3.6112 2.1335 10 6 6.8880 -5.0051 2.6961 11 6 7.4167 -5.9073 1.5792 12 6 8.6874 -5.3214 1.0193 13 1 9.0784 -4.3978 1.4199 14 6 9.3535 -5.9672 -0.0005 15 7 8.8802 -7.0948 -0.4845 16 14 10.9288 -5.2414 -0.6940 17 1 11.2466 -3.9775 0.0177 18 1 12.0418 -6.2070 -0.5098 19 1 10.7500 -4.9624 -2.1416 20 6 6.3699 -6.0103 0.4681 21 6 6.0843 -4.6165 -0.0944 22 6 4.2792 -1.6703 1.3037 23 1 -0.3633 -0.0002 1.0277 24 1 -0.3634 0.8899 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6960 -2.0072 -0.0005 27 1 4.0761 -0.2388 -0.3770 28 1 4.6935 -2.2894 -1.5888 29 1 3.6267 -3.3112 -0.5337 30 1 4.6365 -4.1386 1.4269 31 1 6.2255 -2.9688 2.9294 32 1 7.5212 -3.1870 1.7287 33 1 5.9689 -5.4288 3.1009 34 1 7.6341 -4.9318 3.4873 35 1 7.6198 -6.9004 1.9798 36 1 9.3490 -7.5494 -1.2019 37 1 6.7465 -6.6534 -0.3273 38 1 5.4509 -6.4340 0.8731 39 1 5.3382 -4.6899 -0.8856 40 1 7.0033 -4.1928 -0.4993 41 1 3.6323 -2.3402 1.8703 42 1 4.7026 -0.8742 1.9162 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:32 Heat of formation + Delta-G solvation = -40.527803 kcal Electronic energy + Delta-G solvation = -20873.142618 eV Core-core repulsion = 17852.400183 eV Total energy + Delta-G solvation = -3020.742435 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.78065 -40.17365 -38.62670 -35.21401 -34.22110 -31.83654 -31.31109 -30.30267 -27.49192 -26.96861 -26.03549 -22.98339 -22.48233 -21.60806 -20.98704 -20.47168 -17.94291 -17.84578 -17.66219 -16.65080 -16.54856 -16.13669 -15.83777 -15.32184 -15.12889 -14.68639 -14.65888 -14.29975 -13.73623 -13.59894 -13.33529 -13.17433 -13.08478 -12.87291 -12.83582 -12.66626 -12.41238 -12.23445 -12.05462 -11.97502 -11.76002 -11.40565 -11.03335 -10.90622 -10.66898 -10.46280 -10.30027 -10.06851 -9.77860 -8.03024 -6.11580 1.38216 1.42131 1.51710 1.62286 2.19881 2.46213 3.11378 3.25710 3.44163 3.82757 3.92723 3.98550 4.06038 4.20678 4.39763 4.48587 4.54165 4.60676 4.68230 4.70575 4.76866 4.76951 4.85630 4.87637 4.91748 4.97701 5.05790 5.16339 5.19427 5.37591 5.43590 5.49026 5.56652 5.65309 5.70144 5.75796 5.98899 6.19330 6.25430 6.48068 6.58446 6.97844 7.27215 7.54065 9.01964 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032805 B = 0.004141 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.324206 B = 6759.927216 C = 6969.052571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.505 3.495 3 O -0.603 6.603 4 N -0.706 5.706 5 C 0.125 3.875 6 C 0.000 4.000 7 N -0.484 5.484 8 C 0.074 3.926 9 C -0.087 4.087 10 C -0.100 4.100 11 C 0.037 3.963 12 C -0.503 4.503 13 H 0.048 0.952 14 C 0.016 3.984 15 N -0.918 5.918 16 Si 0.937 3.063 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.101 4.101 21 C -0.083 4.083 22 C -0.009 4.009 23 H 0.110 0.890 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.419 0.581 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.044 0.956 35 H -0.010 1.010 36 H 0.257 0.743 37 H 0.057 0.943 38 H 0.031 0.969 39 H 0.050 0.950 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.276 8.481 1.235 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.484 6.484 4 N -0.358 5.358 5 C 0.018 3.982 6 C -0.130 4.130 7 N -0.207 5.207 8 C -0.035 4.035 9 C -0.125 4.125 10 C -0.138 4.138 11 C 0.019 3.981 12 C -0.541 4.541 13 H 0.066 0.934 14 C -0.182 4.182 15 N -0.559 5.559 16 Si 0.765 3.235 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.139 4.139 21 C -0.121 4.121 22 C -0.139 4.139 23 H 0.129 0.871 24 H 0.110 0.890 25 H 0.128 0.872 26 H 0.256 0.744 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.008 0.992 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.133 9.351 0.996 19.544 hybrid contribution 0.590 -0.856 -0.319 1.088 sum -16.543 8.495 0.677 18.609 Atomic orbital electron populations 1.21906 0.87800 1.06300 1.06269 1.21723 0.92424 0.82758 0.73637 1.90716 1.72272 1.33383 1.52031 1.45979 1.05991 1.09565 1.74296 1.22357 0.80423 0.98939 0.96467 1.24154 0.93625 0.97138 0.98070 1.68941 1.29391 1.15622 1.06741 1.22052 0.97525 0.88494 0.95397 1.21237 0.98422 0.96448 0.96377 1.21459 0.98984 0.95750 0.97655 1.18700 0.93577 0.93399 0.92430 1.21431 1.07990 1.07411 1.17309 0.93357 1.25554 0.99896 0.95328 0.97441 1.70002 1.40360 1.17568 1.27943 0.85812 0.80931 0.78574 0.78223 1.19586 1.20949 1.21002 1.21346 0.96144 0.96100 1.00346 1.21250 0.99330 0.95297 0.96249 1.24353 0.93572 0.99060 0.96903 0.87149 0.88981 0.87241 0.74362 0.87774 0.89704 0.89218 0.92813 0.92418 0.93323 0.92814 0.93709 0.99212 0.93406 0.92406 0.95047 0.93181 0.93917 0.89617 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 10.30 71.24 0.73 -0.69 16 2 C 0.50 9.67 7.94 87.66 0.70 10.36 16 3 O -0.60 -18.30 16.69 -3.04 -0.05 -18.35 16 4 N -0.71 -11.38 5.39 -441.67 -2.38 -13.76 16 5 C 0.12 2.78 4.59 45.45 0.21 2.99 16 6 C 0.00 -0.01 6.22 83.57 0.52 0.51 16 7 N -0.48 -14.42 6.15 -902.48 -5.55 -19.96 16 8 C 0.07 2.46 1.60 44.92 0.07 2.53 16 9 C -0.09 -3.21 5.19 30.60 0.16 -3.05 16 10 C -0.10 -4.02 5.41 30.60 0.17 -3.85 16 11 C 0.04 1.83 2.58 -11.54 -0.03 1.80 16 12 C -0.50 -27.26 6.61 25.60 0.17 -27.09 16 13 H 0.05 2.64 6.71 -2.91 -0.02 2.62 16 14 C 0.02 0.86 5.30 84.65 0.45 1.31 16 15 N -0.92 -52.83 11.34 21.45 0.24 -52.59 16 16 Si 0.94 44.49 29.54 68.60 2.03 46.51 16 17 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 C -0.10 -4.58 5.24 30.59 0.16 -4.42 16 21 C -0.08 -3.33 4.88 30.59 0.15 -3.18 16 22 C -0.01 -0.21 7.31 83.58 0.61 0.40 16 23 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.42 3.88 8.76 -92.71 -0.81 3.07 16 27 H 0.10 2.85 7.45 -2.38 -0.02 2.84 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.09 1.79 7.65 -2.39 -0.02 1.77 16 30 H 0.05 1.60 7.52 -2.39 -0.02 1.59 16 31 H 0.06 1.85 8.04 -2.39 -0.02 1.84 16 32 H 0.05 2.09 6.62 -2.39 -0.02 2.07 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.06 3.04 6.09 -2.38 -0.01 3.02 16 38 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.77 7.03 -2.39 -0.02 1.75 16 40 H 0.04 2.02 7.22 -2.39 -0.02 2.00 16 41 H 0.09 1.77 7.54 -2.38 -0.02 1.75 16 42 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -68.31 325.81 -1.46 -69.76 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.19 Total: 10.76 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 4.06 Total: -22.38 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -7.69 Total: -86.31 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.05 Total: -18.35 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.31 -1.46 -69.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.235 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds