Wall clock time and date at job start Mon Mar 30 2020 00:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21291 * 120.00214 * 2 1 4 4 N 1.34776 * 120.00070 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63021 * 354.39386 * 4 2 1 6 6 C 1.53184 * 108.77829 * 233.59089 * 5 4 2 7 7 C 1.53045 * 109.34022 * 305.35032 * 6 5 4 8 8 C 1.53102 * 109.50263 * 61.35086 * 7 6 5 9 9 H 1.08997 * 109.49104 * 58.60921 * 8 7 6 10 10 C 1.53001 * 109.48863 * 178.70309 * 8 7 6 11 11 N 1.46899 * 109.46846 * 184.85328 * 10 8 7 12 12 C 1.47475 * 111.00137 * 74.03087 * 11 10 8 13 13 C 1.53508 * 87.93440 * 138.70184 * 12 11 10 14 14 C 1.50701 * 114.16840 * 220.32624 * 13 12 11 15 15 H 1.07999 * 120.00058 * 93.84039 * 14 13 12 16 16 C 1.37881 * 120.00318 * 273.83825 * 14 13 12 17 17 N 1.31513 * 119.99792 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99778 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46715 * 89.99800 * 18 16 14 20 20 H 1.48491 * 109.47292 * 209.99737 * 18 16 14 21 21 H 1.48498 * 109.46962 * 330.00302 * 18 16 14 22 22 C 1.47479 * 110.99664 * 169.99661 * 11 10 8 23 23 C 1.46927 * 120.62870 * 174.38081 * 4 2 1 24 24 H 1.08996 * 109.46852 * 184.87936 * 1 2 3 25 25 H 1.09005 * 109.47277 * 304.88406 * 1 2 3 26 26 H 1.09004 * 109.47019 * 64.88264 * 1 2 3 27 27 H 1.09005 * 109.58292 * 113.80317 * 5 4 2 28 28 H 1.09000 * 109.70210 * 353.45701 * 5 4 2 29 29 H 1.09001 * 109.50020 * 65.32007 * 6 5 4 30 30 H 1.09010 * 109.49514 * 185.38541 * 6 5 4 31 31 H 1.09002 * 109.46119 * 181.40617 * 7 6 5 32 32 H 1.09006 * 109.45661 * 301.36212 * 7 6 5 33 33 H 1.09001 * 109.46963 * 304.84876 * 10 8 7 34 34 H 1.09004 * 109.47190 * 64.85446 * 10 8 7 35 35 H 1.09005 * 113.47543 * 253.46518 * 12 11 10 36 36 H 1.09003 * 113.47884 * 23.93018 * 12 11 10 37 37 H 1.08994 * 114.17549 * 87.62210 * 13 12 11 38 38 H 0.97009 * 119.99402 * 179.97438 * 17 16 14 39 39 H 1.08996 * 113.47905 * 336.06724 * 22 11 10 40 40 H 1.09006 * 113.47541 * 106.52757 * 22 11 10 41 41 H 1.08999 * 109.58601 * 246.19512 * 23 4 2 42 42 H 1.08993 * 109.59258 * 6.62077 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4656 -2.4446 0.1224 6 6 2.0726 -3.2401 1.2823 7 6 3.5806 -3.3834 1.0641 8 6 4.2275 -1.9960 1.0384 9 1 4.0234 -1.4821 1.9777 10 6 5.7392 -2.1409 0.8527 11 7 6.3728 -0.8188 0.9442 12 6 6.4066 -0.3444 2.3402 13 6 7.8299 0.1655 2.0740 14 6 8.7906 -0.0646 3.2120 15 1 9.4101 -0.9492 3.2253 16 6 8.8789 0.8542 4.2363 17 7 9.7170 0.6531 5.2296 18 14 7.8070 2.3839 4.2137 19 1 6.5264 2.1012 4.9106 20 1 8.5123 3.4929 4.9047 21 1 7.5298 2.7733 2.8077 22 6 7.8412 -0.9397 1.0087 23 6 3.6448 -1.1863 -0.1243 24 1 -0.3633 -1.0239 0.0874 25 1 -0.3634 0.5878 0.8430 26 1 -0.3633 0.4362 -0.9305 27 1 1.5685 -3.0115 -0.8029 28 1 0.4102 -2.2573 0.3205 29 1 1.8889 -2.7146 2.2194 30 1 1.6154 -4.2288 1.3239 31 1 4.0108 -3.9705 1.8756 32 1 3.7640 -3.8871 0.1150 33 1 6.1402 -2.7906 1.6307 34 1 5.9451 -2.5756 -0.1255 35 1 5.6914 0.4521 2.5456 36 1 6.3639 -1.1496 3.0736 37 1 7.8734 1.1764 1.6689 38 1 9.7793 1.2998 5.9500 39 1 8.1813 -1.9038 1.3866 40 1 8.3419 -0.6478 0.0854 41 1 3.9255 -1.6506 -1.0697 42 1 4.0280 -0.1666 -0.0877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208965251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:20 Heat of formation + Delta-G solvation = -3.928560 kcal Electronic energy + Delta-G solvation = -20952.002745 eV Core-core repulsion = 17932.847372 eV Total energy + Delta-G solvation = -3019.155373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30899 -39.14326 -37.37714 -33.92386 -32.53098 -31.83940 -30.22813 -28.60940 -25.72496 -25.19927 -24.96445 -23.18908 -21.44644 -20.16508 -19.05928 -18.60031 -17.25038 -17.01067 -16.03646 -15.53329 -15.17464 -14.91180 -14.47090 -14.40098 -13.74912 -13.59763 -13.37538 -13.20995 -13.08030 -12.75913 -12.53545 -12.18575 -12.06730 -11.83239 -11.51592 -11.23160 -11.06943 -10.92179 -10.81136 -10.57036 -10.39135 -9.90337 -9.78392 -9.62992 -9.39899 -9.10844 -8.68280 -8.53981 -8.10297 -6.08342 -4.08772 2.59230 2.95535 3.34196 3.41469 3.48352 4.38842 4.45124 4.48243 4.61138 4.70511 4.87591 4.94065 5.02490 5.17676 5.20711 5.22382 5.22726 5.44238 5.50263 5.58704 5.67598 5.69919 5.76357 5.87792 5.91915 5.91961 6.06916 6.15378 6.26844 6.31262 6.40222 6.47776 6.55225 6.57487 6.76699 7.01731 7.36746 7.42703 7.71718 7.90015 8.15265 8.51053 8.94032 9.54873 11.04072 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.005008 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.892473 B = 5589.378768 C = 6217.945791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.508 3.492 3 O -0.542 6.542 4 N -0.615 5.615 5 C 0.102 3.898 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.095 4.095 9 H 0.075 0.925 10 C 0.028 3.972 11 N -0.483 5.483 12 C -0.009 4.009 13 C -0.007 4.007 14 C -0.509 4.509 15 H 0.074 0.926 16 C 0.075 3.925 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.260 1.260 22 C 0.009 3.991 23 C 0.124 3.876 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.264 0.736 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.226 -9.125 -10.486 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.296 3.704 3 O -0.419 6.419 4 N -0.349 5.349 5 C -0.021 4.021 6 C -0.173 4.173 7 C -0.153 4.153 8 C -0.115 4.115 9 H 0.093 0.907 10 C -0.102 4.102 11 N -0.205 5.205 12 C -0.138 4.138 13 C -0.026 4.026 14 C -0.546 4.546 15 H 0.092 0.908 16 C -0.127 4.127 17 N -0.538 5.538 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.184 1.184 22 C -0.119 4.119 23 C 0.002 3.998 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.182 -8.105 -10.863 23.487 hybrid contribution -0.274 -0.019 0.830 0.874 sum -19.456 -8.124 -10.033 23.350 Atomic orbital electron populations 1.22035 0.92319 1.04308 1.05164 1.20782 0.90470 0.83302 0.75816 1.90759 1.70525 1.30997 1.49571 1.48258 1.08019 1.05875 1.72761 1.21867 0.96667 0.84658 0.98896 1.21913 0.96484 1.00190 0.98691 1.21581 0.94617 0.96963 1.02189 1.21461 0.94803 0.95566 0.99632 0.90691 1.22597 0.93386 0.93223 1.00952 1.68869 1.08356 1.19597 1.23639 1.24243 1.01077 0.99609 0.88851 1.20670 0.92182 0.95166 0.94599 1.20928 1.21410 1.08408 1.03903 0.90819 1.24991 0.94728 0.97852 0.95165 1.69916 1.36471 1.36543 1.10887 0.86842 0.80743 0.83081 0.79076 1.20216 1.21446 1.18431 1.23777 0.88277 1.00200 0.99661 1.21616 0.77587 1.03487 0.97105 0.90051 0.88945 0.88872 0.91398 0.89334 0.91414 0.90706 0.91500 0.91766 0.93904 0.91398 0.92405 0.91881 0.91935 0.92621 0.92188 0.91598 0.91961 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 10.11 36.01 0.36 -1.09 16 2 C 0.51 6.81 7.80 -10.99 -0.09 6.73 16 3 O -0.54 -10.11 16.52 5.55 0.09 -10.02 16 4 N -0.61 -7.36 2.97 -172.77 -0.51 -7.88 16 5 C 0.10 0.80 6.30 -3.72 -0.02 0.78 16 6 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 7 C -0.12 -1.17 5.17 -26.66 -0.14 -1.31 16 8 C -0.10 -1.30 2.38 -90.46 -0.22 -1.51 16 9 H 0.07 1.20 7.55 -51.93 -0.39 0.81 16 10 C 0.03 0.43 4.22 -3.82 -0.02 0.42 16 11 N -0.48 -9.26 5.98 -244.69 -1.46 -10.72 16 12 C -0.01 -0.19 6.04 -7.57 -0.05 -0.23 16 13 C -0.01 -0.16 2.99 -91.25 -0.27 -0.44 16 14 C -0.51 -14.29 9.37 -34.44 -0.32 -14.61 16 15 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 16 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 17 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 18 Si 0.88 22.13 27.41 -169.99 -4.66 17.47 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.26 -6.43 6.22 56.52 0.35 -6.08 16 22 C 0.01 0.19 7.27 -7.57 -0.06 0.14 16 23 C 0.12 1.74 5.54 -3.71 -0.02 1.72 16 24 H 0.08 0.44 5.14 -51.93 -0.27 0.17 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.49 5.15 -51.93 -0.27 0.22 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.68 7.56 -51.93 -0.39 0.29 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.39 7.66 -51.93 -0.40 0.99 16 37 H 0.06 1.57 6.50 -51.93 -0.34 1.23 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 1.87 6.78 -51.93 -0.35 1.52 16 LS Contribution 326.01 15.07 4.91 4.91 Total: -1.00 -33.08 326.01 -9.01 -42.10 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.07 Total: -0.46 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.09 Total: -8.62 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -1.20 Total: -45.39 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.66 Total: 17.47 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.08 -9.01 -42.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208965251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.169 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds