Wall clock time and date at job start Mon Mar 30 2020 00:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21291 * 120.00214 * 2 1 4 4 N 1.34776 * 120.00070 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63021 * 354.39386 * 4 2 1 6 6 C 1.53184 * 108.77829 * 233.59089 * 5 4 2 7 7 C 1.53045 * 109.34022 * 305.35032 * 6 5 4 8 8 C 1.53102 * 109.50263 * 61.35086 * 7 6 5 9 9 H 1.08997 * 109.49104 * 58.60921 * 8 7 6 10 10 C 1.53001 * 109.48863 * 178.70309 * 8 7 6 11 11 N 1.46899 * 109.46846 * 184.85328 * 10 8 7 12 12 C 1.47475 * 111.00137 * 74.03087 * 11 10 8 13 13 C 1.53508 * 87.93440 * 138.70184 * 12 11 10 14 14 C 1.50701 * 114.16840 * 220.32624 * 13 12 11 15 15 H 1.07999 * 120.00058 * 93.84039 * 14 13 12 16 16 C 1.37881 * 120.00318 * 273.83825 * 14 13 12 17 17 N 1.31513 * 119.99792 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99778 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46715 * 89.99800 * 18 16 14 20 20 H 1.48491 * 109.47292 * 209.99737 * 18 16 14 21 21 H 1.48498 * 109.46962 * 330.00302 * 18 16 14 22 22 C 1.47479 * 110.99664 * 169.99661 * 11 10 8 23 23 C 1.46927 * 120.62870 * 174.38081 * 4 2 1 24 24 H 1.08996 * 109.46852 * 184.87936 * 1 2 3 25 25 H 1.09005 * 109.47277 * 304.88406 * 1 2 3 26 26 H 1.09004 * 109.47019 * 64.88264 * 1 2 3 27 27 H 1.09005 * 109.58292 * 113.80317 * 5 4 2 28 28 H 1.09000 * 109.70210 * 353.45701 * 5 4 2 29 29 H 1.09001 * 109.50020 * 65.32007 * 6 5 4 30 30 H 1.09010 * 109.49514 * 185.38541 * 6 5 4 31 31 H 1.09002 * 109.46119 * 181.40617 * 7 6 5 32 32 H 1.09006 * 109.45661 * 301.36212 * 7 6 5 33 33 H 1.09001 * 109.46963 * 304.84876 * 10 8 7 34 34 H 1.09004 * 109.47190 * 64.85446 * 10 8 7 35 35 H 1.09005 * 113.47543 * 253.46518 * 12 11 10 36 36 H 1.09003 * 113.47884 * 23.93018 * 12 11 10 37 37 H 1.08994 * 114.17549 * 87.62210 * 13 12 11 38 38 H 0.97009 * 119.99402 * 179.97438 * 17 16 14 39 39 H 1.08996 * 113.47905 * 336.06724 * 22 11 10 40 40 H 1.09006 * 113.47541 * 106.52757 * 22 11 10 41 41 H 1.08999 * 109.58601 * 246.19512 * 23 4 2 42 42 H 1.08993 * 109.59258 * 6.62077 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4656 -2.4446 0.1224 6 6 2.0726 -3.2401 1.2823 7 6 3.5806 -3.3834 1.0641 8 6 4.2275 -1.9960 1.0384 9 1 4.0234 -1.4821 1.9777 10 6 5.7392 -2.1409 0.8527 11 7 6.3728 -0.8188 0.9442 12 6 6.4066 -0.3444 2.3402 13 6 7.8299 0.1655 2.0740 14 6 8.7906 -0.0646 3.2120 15 1 9.4101 -0.9492 3.2253 16 6 8.8789 0.8542 4.2363 17 7 9.7170 0.6531 5.2296 18 14 7.8070 2.3839 4.2137 19 1 6.5264 2.1012 4.9106 20 1 8.5123 3.4929 4.9047 21 1 7.5298 2.7733 2.8077 22 6 7.8412 -0.9397 1.0087 23 6 3.6448 -1.1863 -0.1243 24 1 -0.3633 -1.0239 0.0874 25 1 -0.3634 0.5878 0.8430 26 1 -0.3633 0.4362 -0.9305 27 1 1.5685 -3.0115 -0.8029 28 1 0.4102 -2.2573 0.3205 29 1 1.8889 -2.7146 2.2194 30 1 1.6154 -4.2288 1.3239 31 1 4.0108 -3.9705 1.8756 32 1 3.7640 -3.8871 0.1150 33 1 6.1402 -2.7906 1.6307 34 1 5.9451 -2.5756 -0.1255 35 1 5.6914 0.4521 2.5456 36 1 6.3639 -1.1496 3.0736 37 1 7.8734 1.1764 1.6689 38 1 9.7793 1.2998 5.9500 39 1 8.1813 -1.9038 1.3866 40 1 8.3419 -0.6478 0.0854 41 1 3.9255 -1.6506 -1.0697 42 1 4.0280 -0.1666 -0.0877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208965251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:19 Heat of formation + Delta-G solvation = -28.112894 kcal Electronic energy + Delta-G solvation = -20953.051456 eV Core-core repulsion = 17932.847372 eV Total energy + Delta-G solvation = -3020.204084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40432 -40.65926 -38.44905 -35.21946 -34.44144 -32.83330 -31.28825 -29.99731 -27.27023 -26.74118 -26.09484 -24.54087 -22.58893 -21.31866 -20.48976 -19.90769 -19.14471 -18.15700 -17.04931 -16.90951 -16.48863 -16.39351 -15.79276 -15.49392 -15.35286 -14.83391 -14.63462 -14.37063 -14.13506 -14.11967 -13.58523 -13.52764 -13.37675 -13.04720 -13.00819 -12.64327 -12.55471 -11.99131 -11.98582 -11.82906 -11.68134 -11.63517 -11.46439 -11.19984 -11.07188 -10.75709 -10.70237 -9.77895 -9.61492 -8.34433 -6.38221 1.30693 1.33383 1.44735 1.61002 2.08215 2.30955 2.98093 3.18871 3.64366 3.68408 3.84912 3.96030 4.06840 4.09979 4.13194 4.28848 4.36834 4.38951 4.49414 4.60801 4.64926 4.67180 4.68293 4.72353 4.76907 4.84369 4.88666 4.91560 4.96456 5.07963 5.10178 5.13699 5.29917 5.37924 5.44256 5.48434 5.56728 5.60085 6.25033 6.27396 6.47121 6.67018 7.18726 7.28418 8.81571 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.005008 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.892473 B = 5589.378768 C = 6217.945791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.494 3.506 3 O -0.609 6.609 4 N -0.614 5.614 5 C 0.097 3.903 6 C -0.131 4.131 7 C -0.111 4.111 8 C -0.088 4.088 9 H 0.043 0.957 10 C 0.027 3.973 11 N -0.479 5.479 12 C 0.004 3.996 13 C -0.023 4.023 14 C -0.510 4.510 15 H 0.041 0.959 16 C 0.024 3.976 17 N -0.944 5.944 18 Si 0.933 3.067 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.253 1.253 22 C 0.020 3.980 23 C 0.127 3.873 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.267 0.733 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.195 -10.783 -12.043 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.285 3.715 3 O -0.491 6.491 4 N -0.346 5.346 5 C -0.024 4.024 6 C -0.169 4.169 7 C -0.149 4.149 8 C -0.108 4.108 9 H 0.062 0.938 10 C -0.102 4.102 11 N -0.201 5.201 12 C -0.125 4.125 13 C -0.042 4.042 14 C -0.548 4.548 15 H 0.059 0.941 16 C -0.174 4.174 17 N -0.584 5.584 18 Si 0.758 3.242 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.177 1.177 22 C -0.108 4.108 23 C 0.004 3.996 24 H 0.134 0.866 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.178 -9.819 -12.434 27.256 hybrid contribution 0.693 0.388 1.280 1.507 sum -21.485 -9.431 -11.154 25.980 Atomic orbital electron populations 1.22053 0.87895 1.06775 1.05945 1.21818 0.92638 0.82617 0.74442 1.90725 1.72210 1.33412 1.52755 1.48430 1.07280 1.07368 1.71568 1.22237 0.97715 0.82614 0.99854 1.21928 0.95040 1.01857 0.98108 1.21577 0.95870 0.94225 1.03267 1.21380 0.93741 0.97736 0.97897 0.93809 1.22708 0.94397 0.90951 1.02122 1.68832 1.07670 1.22285 1.21360 1.23946 0.98963 0.99152 0.90452 1.20652 0.92706 0.96134 0.94750 1.21138 1.21427 1.07082 1.05137 0.94100 1.25732 0.95987 1.00863 0.94839 1.70030 1.38469 1.37991 1.11921 0.85915 0.79159 0.79692 0.79443 1.19645 1.20688 1.17687 1.23642 0.89392 0.98733 0.99048 1.21392 0.79392 1.00960 0.97888 0.86574 0.88652 0.87603 0.89103 0.86360 0.92901 0.87392 0.91556 0.89825 0.94196 0.89013 0.93302 0.92548 0.92688 0.92357 0.92101 0.89941 0.90385 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.11 71.24 0.72 -1.53 16 2 C 0.49 12.79 7.80 87.66 0.68 13.47 16 3 O -0.61 -23.45 16.52 -3.06 -0.05 -23.51 16 4 N -0.61 -13.52 2.97 -818.90 -2.43 -15.95 16 5 C 0.10 1.09 6.30 86.36 0.54 1.64 16 6 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 7 C -0.11 -1.92 5.17 30.64 0.16 -1.76 16 8 C -0.09 -2.30 2.38 -10.69 -0.03 -2.32 16 9 H 0.04 1.41 7.55 -2.39 -0.02 1.40 16 10 C 0.03 0.81 4.22 86.30 0.36 1.17 16 11 N -0.48 -18.26 5.98 -928.06 -5.55 -23.81 16 12 C 0.00 0.19 6.04 83.56 0.50 0.70 16 13 C -0.02 -1.13 2.99 -11.20 -0.03 -1.16 16 14 C -0.51 -29.47 9.37 25.60 0.24 -29.23 16 15 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 16 C 0.02 1.42 5.47 84.66 0.46 1.88 16 17 N -0.94 -59.34 13.96 21.45 0.30 -59.04 16 18 Si 0.93 46.44 27.41 68.60 1.88 48.32 16 19 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.25 -12.19 6.22 99.48 0.62 -11.57 16 22 C 0.02 0.83 7.27 83.56 0.61 1.44 16 23 C 0.13 3.44 5.54 86.37 0.48 3.92 16 24 H 0.12 0.67 5.14 -2.39 -0.01 0.66 16 25 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.12 0.64 5.15 -2.39 -0.01 0.63 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.04 1.22 7.56 -2.39 -0.02 1.21 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 37 H 0.06 2.77 6.50 -2.39 -0.02 2.76 16 38 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 39 H 0.06 2.45 7.72 -2.39 -0.02 2.43 16 40 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 2.18 6.78 -2.39 -0.02 2.17 16 Total: -1.00 -76.50 326.01 -0.07 -76.57 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.90 Total: 10.66 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.89 Total: -13.24 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -7.68 Total: -98.81 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.88 Total: 48.32 kcal Total: -76.50 -0.07 -76.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208965251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.459 kcal (2) G-P(sol) polarization free energy of solvation -76.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds