Wall clock time and date at job start Mon Mar 30 2020 01:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00374 * 2 1 4 4 C 1.52991 * 109.47317 * 84.65501 * 3 2 1 5 5 H 1.08998 * 113.04533 * 295.34630 * 4 3 2 6 6 C 1.53949 * 113.76975 * 67.09633 * 4 3 2 7 7 C 1.53944 * 86.40994 * 137.96274 * 6 4 3 8 8 N 1.47583 * 86.11477 * 336.34225 * 7 6 4 9 9 C 1.36944 * 134.48876 * 204.65933 * 8 7 6 10 10 H 1.08003 * 119.99424 * 166.61131 * 9 8 7 11 11 C 1.38811 * 120.00026 * 346.60489 * 9 8 7 12 12 N 1.31624 * 119.99590 * 161.36973 * 11 9 8 13 13 Si 1.86794 * 120.00246 * 341.37634 * 11 9 8 14 14 H 1.48507 * 109.47035 * 86.96177 * 13 11 9 15 15 H 1.48501 * 109.46916 * 206.95792 * 13 11 9 16 16 H 1.48494 * 109.47304 * 326.95929 * 13 11 9 17 17 C 1.34786 * 119.99844 * 180.02562 * 2 1 3 18 18 O 1.21286 * 119.99639 * 179.97438 * 17 2 1 19 19 C 1.50690 * 119.99833 * 359.97438 * 17 2 1 20 20 C 1.53007 * 109.47158 * 180.02562 * 19 17 2 21 21 C 1.53000 * 109.47410 * 179.97438 * 20 19 17 22 22 C 1.52995 * 117.50278 * 243.62518 * 21 20 19 23 23 C 1.52994 * 117.49890 * 174.99596 * 21 20 19 24 24 H 1.09001 * 109.47563 * 95.29753 * 1 2 3 25 25 H 1.09002 * 109.46940 * 215.30215 * 1 2 3 26 26 H 1.09005 * 109.46931 * 335.30065 * 1 2 3 27 27 H 1.09008 * 109.46738 * 324.65649 * 3 2 1 28 28 H 1.08998 * 109.47482 * 204.66296 * 3 2 1 29 29 H 1.09006 * 113.73710 * 23.56279 * 6 4 3 30 30 H 1.09003 * 113.74237 * 252.36309 * 6 4 3 31 31 H 1.08999 * 113.76972 * 90.63754 * 7 6 4 32 32 H 1.08997 * 113.77060 * 221.93017 * 7 6 4 33 33 H 0.96994 * 120.00008 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47480 * 300.00119 * 19 17 2 35 35 H 1.09001 * 109.47454 * 60.00057 * 19 17 2 36 36 H 1.08997 * 109.46549 * 300.00231 * 20 19 17 37 37 H 1.09001 * 109.46925 * 59.99692 * 20 19 17 38 38 H 1.09002 * 115.54805 * 29.33140 * 21 20 19 39 39 H 1.09006 * 117.49329 * 359.97438 * 22 21 20 40 40 H 1.08994 * 117.50183 * 145.02130 * 22 21 20 41 41 H 1.08997 * 117.49974 * 214.98068 * 23 21 20 42 42 H 1.09001 * 117.50114 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3362 1.7775 1.4361 5 1 1.3794 2.0269 1.8947 6 6 3.2382 0.8986 2.3215 7 6 3.8178 2.2150 2.8702 8 7 3.3682 2.8241 1.6034 9 6 3.7524 3.9183 0.8751 10 1 3.4060 4.0396 -0.1406 11 6 4.5868 4.8715 1.4425 12 7 5.2484 5.7092 0.6723 13 14 4.7711 4.9654 3.2990 14 1 5.8413 4.0341 3.7380 15 1 5.1299 6.3520 3.6913 16 1 3.4886 4.5848 3.9436 17 6 2.1389 -1.1673 -0.0005 18 8 3.3517 -1.1673 -0.0010 19 6 1.3853 -2.4723 -0.0005 20 6 2.3795 -3.6353 -0.0005 21 6 1.6145 -4.9603 0.0001 22 6 1.7838 -5.8733 1.2161 23 6 2.4321 -6.2481 -0.1182 24 1 -0.3634 -0.0949 -1.0233 25 1 -0.3633 -0.8387 0.5939 26 1 -0.3633 0.9337 0.4294 27 1 1.6532 2.0025 -0.5945 28 1 3.1880 1.1164 -0.4288 29 1 3.9577 0.3027 1.7598 30 1 2.6917 0.3166 3.0636 31 1 3.2951 2.5926 3.7490 32 1 4.9008 2.2008 2.9929 33 1 5.8318 6.3750 1.0687 34 1 0.7590 -2.5302 0.8897 35 1 0.7583 -2.5298 -0.8903 36 1 3.0062 -3.5775 -0.8905 37 1 3.0062 -3.5775 0.8894 38 1 0.6368 -4.9389 -0.4813 39 1 2.4405 -5.5300 2.0155 40 1 0.9173 -6.4526 1.5350 41 1 1.9921 -7.0740 -0.6770 42 1 3.5150 -6.1514 -0.1960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231274425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:51 Heat of formation + Delta-G solvation = 43.325438 kcal Electronic energy + Delta-G solvation = -20529.787358 eV Core-core repulsion = 17512.681073 eV Total energy + Delta-G solvation = -3017.106286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.92192 -38.15569 -37.54594 -35.23140 -32.44938 -32.10722 -28.91342 -28.20476 -26.57911 -24.95030 -22.98014 -22.63036 -22.48775 -20.58763 -19.25487 -18.84100 -16.95859 -16.67413 -16.05268 -16.00479 -15.49312 -15.10007 -14.54829 -14.30047 -13.80651 -13.43100 -13.19157 -12.83937 -12.75550 -12.47891 -12.38739 -11.99769 -11.81355 -11.77096 -11.51196 -11.42651 -11.29048 -11.05804 -10.63447 -10.50528 -10.18445 -10.07568 -10.03701 -9.92435 -9.52853 -9.33900 -8.79754 -8.34357 -7.08298 -5.86312 -3.16313 2.83407 3.14763 3.40671 3.49501 3.50972 3.57767 4.36938 4.60930 4.63344 4.71058 4.72733 4.79037 5.00578 5.13599 5.15629 5.30158 5.34508 5.36703 5.40796 5.41217 5.51225 5.65400 5.69383 5.76085 5.81195 5.88638 5.89864 5.97569 5.99311 6.20387 6.22507 6.31430 6.50806 6.53452 6.59657 6.71943 7.18192 7.28428 7.60191 8.38467 8.42063 8.73962 9.70357 10.37363 11.30579 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.003985 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.857425 B = 7024.952453 C = 7306.140783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.613 5.613 3 C 0.116 3.884 4 C 0.130 3.870 5 H 0.046 0.954 6 C -0.141 4.141 7 C 0.098 3.902 8 N -0.614 5.614 9 C -0.227 4.227 10 H 0.097 0.903 11 C 0.017 3.983 12 N -0.918 5.918 13 Si 0.880 3.120 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.274 1.274 17 C 0.508 3.492 18 O -0.532 6.532 19 C -0.134 4.134 20 C -0.075 4.075 21 C -0.152 4.152 22 C -0.182 4.182 23 C -0.182 4.182 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.262 0.738 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.427 -20.882 -0.238 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.346 5.346 3 C -0.007 4.007 4 C 0.023 3.977 5 H 0.064 0.936 6 C -0.179 4.179 7 C -0.027 4.027 8 N -0.342 5.342 9 C -0.353 4.353 10 H 0.114 0.886 11 C -0.181 4.181 12 N -0.563 5.563 13 Si 0.710 3.290 14 H -0.213 1.213 15 H -0.227 1.227 16 H -0.199 1.199 17 C 0.296 3.704 18 O -0.409 6.409 19 C -0.174 4.174 20 C -0.112 4.112 21 C -0.171 4.171 22 C -0.219 4.219 23 C -0.219 4.219 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.598 -20.517 -0.382 23.571 hybrid contribution -0.161 0.441 1.155 1.247 sum -11.759 -20.076 0.773 23.279 Atomic orbital electron populations 1.21769 0.80058 1.03239 1.01385 1.47857 1.06700 1.06557 1.73526 1.21703 0.98177 0.82774 0.98035 1.22555 0.92807 0.88744 0.93615 0.93650 1.23624 0.99478 0.96245 0.98584 1.22699 0.98792 0.91004 0.90168 1.46573 1.35398 1.29506 1.22676 1.18710 1.25237 0.96523 0.94831 0.88552 1.24818 0.98789 0.96938 0.97538 1.69793 1.29942 1.22433 1.34121 0.86821 0.78121 0.76115 0.87911 1.21259 1.22722 1.19934 1.20647 0.88199 0.85295 0.76241 1.90717 1.13886 1.87213 1.49065 1.21661 0.99416 0.92404 1.03928 1.20934 0.96591 0.90023 1.03698 1.22359 1.00613 0.91504 1.02590 1.23053 1.03188 1.03830 0.91868 1.22961 0.99766 0.98549 1.00645 0.92808 0.91504 0.90698 0.91117 0.88704 0.88914 0.93304 0.94322 0.92608 0.92826 0.89061 0.89248 0.90793 0.90945 0.87863 0.88690 0.89060 0.88996 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.17 59.84 0.61 1.34 16 2 N -0.61 -8.47 2.81 -181.58 -0.51 -8.98 16 3 C 0.12 2.08 5.37 -4.05 -0.02 2.05 16 4 C 0.13 2.59 4.58 -66.67 -0.31 2.28 16 5 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.14 -2.73 7.28 -25.80 -0.19 -2.92 16 7 C 0.10 2.23 5.83 -2.97 -0.02 2.22 16 8 N -0.61 -15.37 3.36 -170.48 -0.57 -15.94 16 9 C -0.23 -6.58 10.91 -15.06 -0.16 -6.75 16 10 H 0.10 2.91 8.06 -52.48 -0.42 2.49 16 11 C 0.02 0.50 5.50 -17.43 -0.10 0.40 16 12 N -0.92 -29.16 13.97 55.49 0.78 -28.38 16 13 Si 0.88 23.32 25.14 -169.99 -4.27 19.05 16 14 H -0.29 -7.45 6.84 56.52 0.39 -7.06 16 15 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 16 H -0.27 -7.04 6.26 56.52 0.35 -6.69 16 17 C 0.51 7.27 7.30 -10.99 -0.08 7.19 16 18 O -0.53 -9.89 13.97 5.55 0.08 -9.81 16 19 C -0.13 -1.30 4.28 -27.88 -0.12 -1.41 16 20 C -0.07 -0.76 4.79 -26.73 -0.13 -0.89 16 21 C -0.15 -1.24 5.74 -90.63 -0.52 -1.75 16 22 C -0.18 -1.40 10.18 -26.73 -0.27 -1.68 16 23 C -0.18 -1.42 10.25 -26.73 -0.27 -1.69 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.47 6.66 -51.93 -0.35 0.12 16 26 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 27 H 0.07 1.22 8.11 -51.92 -0.42 0.80 16 28 H 0.09 2.00 7.27 -51.93 -0.38 1.63 16 29 H 0.09 1.93 6.68 -51.93 -0.35 1.59 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.87 6.84 -51.93 -0.36 0.51 16 32 H 0.06 1.32 6.99 -51.93 -0.36 0.96 16 33 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 34 H 0.09 0.73 7.41 -51.93 -0.38 0.35 16 35 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 36 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 38 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.09 0.76 8.03 -51.93 -0.42 0.35 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -34.04 334.98 -8.29 -42.33 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.25 Total: -1.70 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.58 Total: -1.61 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.31 Total: -53.30 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.27 Total: 19.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.04 -8.29 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231274425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.657 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds