Wall clock time and date at job start Mon Mar 30 2020 01:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00374 * 2 1 4 4 C 1.52991 * 109.47317 * 84.65501 * 3 2 1 5 5 H 1.08998 * 113.04533 * 295.34630 * 4 3 2 6 6 C 1.53949 * 113.76975 * 67.09633 * 4 3 2 7 7 C 1.53944 * 86.40994 * 137.96274 * 6 4 3 8 8 N 1.47583 * 86.11477 * 336.34225 * 7 6 4 9 9 C 1.36944 * 134.48876 * 204.65933 * 8 7 6 10 10 H 1.08003 * 119.99424 * 166.61131 * 9 8 7 11 11 C 1.38811 * 120.00026 * 346.60489 * 9 8 7 12 12 N 1.31624 * 119.99590 * 161.36973 * 11 9 8 13 13 Si 1.86794 * 120.00246 * 341.37634 * 11 9 8 14 14 H 1.48507 * 109.47035 * 86.96177 * 13 11 9 15 15 H 1.48501 * 109.46916 * 206.95792 * 13 11 9 16 16 H 1.48494 * 109.47304 * 326.95929 * 13 11 9 17 17 C 1.34786 * 119.99844 * 180.02562 * 2 1 3 18 18 O 1.21286 * 119.99639 * 179.97438 * 17 2 1 19 19 C 1.50690 * 119.99833 * 359.97438 * 17 2 1 20 20 C 1.53007 * 109.47158 * 180.02562 * 19 17 2 21 21 C 1.53000 * 109.47410 * 179.97438 * 20 19 17 22 22 C 1.52995 * 117.50278 * 243.62518 * 21 20 19 23 23 C 1.52994 * 117.49890 * 174.99596 * 21 20 19 24 24 H 1.09001 * 109.47563 * 95.29753 * 1 2 3 25 25 H 1.09002 * 109.46940 * 215.30215 * 1 2 3 26 26 H 1.09005 * 109.46931 * 335.30065 * 1 2 3 27 27 H 1.09008 * 109.46738 * 324.65649 * 3 2 1 28 28 H 1.08998 * 109.47482 * 204.66296 * 3 2 1 29 29 H 1.09006 * 113.73710 * 23.56279 * 6 4 3 30 30 H 1.09003 * 113.74237 * 252.36309 * 6 4 3 31 31 H 1.08999 * 113.76972 * 90.63754 * 7 6 4 32 32 H 1.08997 * 113.77060 * 221.93017 * 7 6 4 33 33 H 0.96994 * 120.00008 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47480 * 300.00119 * 19 17 2 35 35 H 1.09001 * 109.47454 * 60.00057 * 19 17 2 36 36 H 1.08997 * 109.46549 * 300.00231 * 20 19 17 37 37 H 1.09001 * 109.46925 * 59.99692 * 20 19 17 38 38 H 1.09002 * 115.54805 * 29.33140 * 21 20 19 39 39 H 1.09006 * 117.49329 * 359.97438 * 22 21 20 40 40 H 1.08994 * 117.50183 * 145.02130 * 22 21 20 41 41 H 1.08997 * 117.49974 * 214.98068 * 23 21 20 42 42 H 1.09001 * 117.50114 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3362 1.7775 1.4361 5 1 1.3794 2.0269 1.8947 6 6 3.2382 0.8986 2.3215 7 6 3.8178 2.2150 2.8702 8 7 3.3682 2.8241 1.6034 9 6 3.7524 3.9183 0.8751 10 1 3.4060 4.0396 -0.1406 11 6 4.5868 4.8715 1.4425 12 7 5.2484 5.7092 0.6723 13 14 4.7711 4.9654 3.2990 14 1 5.8413 4.0341 3.7380 15 1 5.1299 6.3520 3.6913 16 1 3.4886 4.5848 3.9436 17 6 2.1389 -1.1673 -0.0005 18 8 3.3517 -1.1673 -0.0010 19 6 1.3853 -2.4723 -0.0005 20 6 2.3795 -3.6353 -0.0005 21 6 1.6145 -4.9603 0.0001 22 6 1.7838 -5.8733 1.2161 23 6 2.4321 -6.2481 -0.1182 24 1 -0.3634 -0.0949 -1.0233 25 1 -0.3633 -0.8387 0.5939 26 1 -0.3633 0.9337 0.4294 27 1 1.6532 2.0025 -0.5945 28 1 3.1880 1.1164 -0.4288 29 1 3.9577 0.3027 1.7598 30 1 2.6917 0.3166 3.0636 31 1 3.2951 2.5926 3.7490 32 1 4.9008 2.2008 2.9929 33 1 5.8318 6.3750 1.0687 34 1 0.7590 -2.5302 0.8897 35 1 0.7583 -2.5298 -0.8903 36 1 3.0062 -3.5775 -0.8905 37 1 3.0062 -3.5775 0.8894 38 1 0.6368 -4.9389 -0.4813 39 1 2.4405 -5.5300 2.0155 40 1 0.9173 -6.4526 1.5350 41 1 1.9921 -7.0740 -0.6770 42 1 3.5150 -6.1514 -0.1960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231274425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:50 Heat of formation + Delta-G solvation = 21.454399 kcal Electronic energy + Delta-G solvation = -20530.735758 eV Core-core repulsion = 17512.681073 eV Total energy + Delta-G solvation = -3018.054685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13259 -39.69229 -38.32003 -36.42485 -34.41083 -33.22396 -30.52454 -29.96806 -27.47676 -26.07339 -24.95547 -23.94612 -23.16234 -21.26882 -21.00317 -19.97390 -18.82216 -17.87712 -17.44332 -17.04894 -16.85206 -16.37883 -15.80584 -15.52525 -15.18525 -14.78934 -14.71760 -14.09592 -14.00705 -13.80529 -13.72855 -13.35009 -13.11750 -12.79616 -12.78671 -12.50727 -12.38396 -12.17689 -12.07906 -12.04198 -11.90768 -11.81149 -11.25726 -11.13521 -10.93864 -10.74430 -10.63185 -9.63098 -9.10920 -8.15573 -5.41538 1.29490 1.33116 1.42014 1.75375 2.03810 2.42122 2.94767 2.99335 3.14198 3.60854 3.73873 3.86686 4.07197 4.10223 4.16642 4.26963 4.31392 4.34703 4.44024 4.47072 4.55757 4.62180 4.65851 4.75282 4.80406 4.85016 4.87674 4.92336 4.98590 5.03677 5.10407 5.12289 5.21124 5.27346 5.32574 5.49440 5.53566 5.63173 6.14803 6.52216 6.54595 7.32116 7.44573 8.26029 9.05291 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.003985 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.857425 B = 7024.952453 C = 7306.140783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.610 5.610 3 C 0.127 3.873 4 C 0.135 3.865 5 H 0.073 0.927 6 C -0.119 4.119 7 C 0.090 3.910 8 N -0.643 5.643 9 C -0.213 4.213 10 H 0.068 0.932 11 C -0.049 4.049 12 N -0.967 5.967 13 Si 0.943 3.057 14 H -0.282 1.282 15 H -0.303 1.303 16 H -0.256 1.256 17 C 0.500 3.500 18 O -0.586 6.586 19 C -0.120 4.120 20 C -0.073 4.073 21 C -0.150 4.150 22 C -0.180 4.180 23 C -0.190 4.190 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.260 0.740 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.638 -23.240 1.262 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C 0.003 3.997 4 C 0.029 3.971 5 H 0.090 0.910 6 C -0.157 4.157 7 C -0.034 4.034 8 N -0.371 5.371 9 C -0.341 4.341 10 H 0.086 0.914 11 C -0.242 4.242 12 N -0.616 5.616 13 Si 0.771 3.229 14 H -0.209 1.209 15 H -0.231 1.231 16 H -0.180 1.180 17 C 0.290 3.710 18 O -0.466 6.466 19 C -0.160 4.160 20 C -0.111 4.111 21 C -0.168 4.168 22 C -0.217 4.217 23 C -0.227 4.227 24 H 0.091 0.909 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.143 0.857 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.884 -22.930 1.134 27.361 hybrid contribution 0.806 1.073 0.594 1.467 sum -14.078 -21.858 1.728 26.056 Atomic orbital electron populations 1.22111 0.76652 1.04844 1.03410 1.47927 1.08592 1.04756 1.73028 1.21258 0.96846 0.84988 0.96645 1.22804 0.92830 0.86514 0.94976 0.90959 1.23367 0.98808 0.94889 0.98610 1.22892 0.98212 0.92569 0.89772 1.46746 1.37841 1.28923 1.23589 1.18660 1.23917 0.97174 0.94316 0.91449 1.25505 0.99392 0.97419 1.01888 1.69933 1.31708 1.23994 1.35947 0.85816 0.78749 0.75761 0.82539 1.20869 1.23106 1.18045 1.21579 0.87874 0.86691 0.74859 1.90704 1.16526 1.87977 1.51408 1.21681 0.98967 0.88737 1.06574 1.20853 0.96690 0.91851 1.01683 1.22330 1.01120 0.90147 1.03191 1.23107 1.03521 1.03620 0.91458 1.23035 0.99339 0.99062 1.01263 0.90936 0.88175 0.90519 0.90919 0.93033 0.90883 0.89424 0.92668 0.94295 0.93102 0.86171 0.86329 0.92967 0.93079 0.85710 0.89543 0.87401 0.87589 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.17 127.77 1.30 2.31 16 2 N -0.61 -15.49 2.81 -846.76 -2.38 -17.87 16 3 C 0.13 4.51 5.37 86.38 0.46 4.97 16 4 C 0.13 5.13 4.58 45.03 0.21 5.34 16 5 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 6 C -0.12 -4.36 7.28 31.25 0.23 -4.14 16 7 C 0.09 3.94 5.83 86.49 0.50 4.45 16 8 N -0.64 -32.01 3.36 -693.29 -2.33 -34.34 16 9 C -0.21 -12.67 10.91 84.03 0.92 -11.75 16 10 H 0.07 4.28 8.06 -2.91 -0.02 4.25 16 11 C -0.05 -3.03 5.50 84.86 0.47 -2.56 16 12 N -0.97 -63.67 13.97 21.65 0.30 -63.37 16 13 Si 0.94 48.67 25.14 68.60 1.72 50.39 16 14 H -0.28 -14.22 6.84 99.48 0.68 -13.54 16 15 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16 16 H -0.26 -12.30 6.26 99.48 0.62 -11.68 16 17 C 0.50 13.48 7.30 87.65 0.64 14.12 16 18 O -0.59 -22.15 13.97 -3.05 -0.04 -22.20 16 19 C -0.12 -1.91 4.28 29.85 0.13 -1.78 16 20 C -0.07 -1.38 4.79 30.60 0.15 -1.23 16 21 C -0.15 -2.02 5.74 -10.80 -0.06 -2.08 16 22 C -0.18 -2.33 10.18 30.59 0.31 -2.02 16 23 C -0.19 -2.63 10.25 30.59 0.31 -2.32 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.10 0.80 6.66 -2.39 -0.02 0.79 16 26 H 0.08 1.10 8.03 -2.38 -0.02 1.09 16 27 H 0.07 2.50 8.11 -2.38 -0.02 2.48 16 28 H 0.05 2.27 7.27 -2.39 -0.02 2.26 16 29 H 0.07 3.03 6.68 -2.38 -0.02 3.01 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.06 2.27 6.84 -2.39 -0.02 2.26 16 32 H 0.04 1.82 6.99 -2.39 -0.02 1.81 16 33 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 34 H 0.12 1.29 7.41 -2.39 -0.02 1.27 16 35 H 0.12 1.26 8.11 -2.39 -0.02 1.24 16 36 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.05 1.17 7.83 -2.39 -0.02 1.15 16 38 H 0.12 1.18 8.07 -2.39 -0.02 1.16 16 39 H 0.09 1.26 8.03 -2.38 -0.02 1.24 16 40 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -77.97 334.98 3.70 -74.28 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.86 Total: 9.80 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.56 Total: 3.31 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.41 Total: -115.58 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.04 Total: -22.20 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 1.72 Total: 50.39 kcal Total: -77.97 3.70 -74.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231274425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.732 kcal (2) G-P(sol) polarization free energy of solvation -77.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds