Wall clock time and date at job start Mon Mar 30 2020 01:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00029 * 2 1 4 4 H 1.07997 * 119.99744 * 322.03387 * 3 2 1 5 5 C 1.38810 * 120.00354 * 142.03479 * 3 2 1 6 6 N 1.31620 * 120.00613 * 157.02215 * 5 3 2 7 7 Si 1.86807 * 119.99700 * 337.01865 * 5 3 2 8 8 H 1.48500 * 109.46739 * 95.68292 * 7 5 3 9 9 H 1.48500 * 109.47235 * 215.68019 * 7 5 3 10 10 H 1.48499 * 109.47205 * 335.68326 * 7 5 3 11 11 C 1.46503 * 120.00252 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.46906 * 90.00119 * 11 2 1 13 13 C 1.53000 * 109.47258 * 180.02562 * 12 11 2 14 14 N 1.46500 * 109.47321 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99743 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00201 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99804 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47325 * 180.02562 * 17 15 14 19 19 H 1.08995 * 110.34568 * 52.70973 * 18 17 15 20 20 C 1.51110 * 110.38460 * 290.30198 * 18 17 15 21 21 C 1.30522 * 111.10208 * 224.75389 * 20 18 17 22 22 C 1.51097 * 111.11009 * 359.97438 * 21 20 18 23 23 C 1.54636 * 110.39038 * 175.00151 * 18 17 15 24 24 H 1.09001 * 109.47122 * 265.64864 * 1 2 3 25 25 H 1.08995 * 109.46866 * 25.65543 * 1 2 3 26 26 H 1.09000 * 109.46785 * 145.65250 * 1 2 3 27 27 H 0.96991 * 120.00566 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.46839 * 330.00332 * 11 2 1 29 29 H 1.09001 * 109.47127 * 210.00550 * 11 2 1 30 30 H 1.09001 * 109.46994 * 60.00008 * 12 11 2 31 31 H 1.09001 * 109.47579 * 300.00154 * 12 11 2 32 32 H 1.09001 * 109.46908 * 300.00512 * 13 12 11 33 33 H 1.09001 * 109.47154 * 60.00053 * 13 12 11 34 34 H 0.96996 * 120.00183 * 359.97438 * 14 13 12 35 35 H 1.09001 * 109.47455 * 300.00029 * 17 15 14 36 36 H 1.09001 * 109.46996 * 59.99808 * 17 15 14 37 37 H 1.08000 * 124.44517 * 44.72472 * 20 18 17 38 38 H 1.08001 * 124.44259 * 179.97438 * 21 20 18 39 39 H 1.08995 * 110.38692 * 257.63142 * 22 21 20 40 40 H 1.08998 * 110.48587 * 135.29771 * 22 21 20 41 41 H 1.08996 * 111.03402 * 261.47716 * 23 18 17 42 42 H 1.09008 * 111.03421 * 25.36734 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0222 -0.5754 5 6 3.3175 1.3132 0.7395 6 7 4.2044 2.2305 0.4166 7 14 3.6303 0.1825 2.1932 8 1 4.4680 -0.9637 1.7575 9 1 4.3367 0.9338 3.2618 10 1 2.3350 -0.3216 2.7160 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2171 -3.0363 -1.4412 14 7 3.4618 -3.4594 -2.8223 15 6 4.1236 -4.6075 -3.0680 16 8 4.5169 -5.2901 -2.1459 17 6 4.3748 -5.0431 -4.4886 18 6 5.1383 -6.3690 -4.4881 19 1 4.6226 -7.1030 -3.8690 20 6 6.5520 -6.1621 -3.9961 21 6 7.4095 -6.7929 -4.7514 22 6 6.7107 -7.5262 -5.8727 23 6 5.2983 -6.8992 -5.9319 24 1 -0.3633 -0.0780 1.0247 25 1 -0.3633 0.9263 -0.4449 26 1 -0.3633 -0.8485 -0.5798 27 1 5.0205 2.3192 0.9331 28 1 1.6085 -2.0281 0.5147 29 1 3.1499 -1.1381 0.5144 30 1 3.0416 -0.9515 -1.9558 31 1 1.5002 -1.8415 -1.9556 32 1 4.1694 -2.9061 -0.9272 33 1 2.6276 -3.7955 -0.9272 34 1 3.1469 -2.9137 -3.5598 35 1 3.4225 -5.1729 -5.0027 36 1 4.9646 -4.2840 -5.0025 37 1 6.8179 -5.5697 -3.1331 38 1 8.4781 -6.7910 -4.5954 39 1 6.6451 -8.5905 -5.6474 40 1 7.2349 -7.3699 -6.8155 41 1 4.5446 -7.6536 -6.1574 42 1 5.2610 -6.0838 -6.6545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233757795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:27 Heat of formation + Delta-G solvation = -9.742065 kcal Electronic energy + Delta-G solvation = -19876.793113 eV Core-core repulsion = 16857.385648 eV Total energy + Delta-G solvation = -3019.407465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99415 -38.37003 -36.47488 -34.70093 -32.10903 -31.62894 -30.53541 -29.10100 -26.64358 -25.94850 -24.55632 -21.77637 -20.91848 -20.69234 -20.17370 -18.79481 -16.98075 -16.75581 -16.03261 -15.98289 -15.59509 -15.17835 -14.92969 -14.25058 -13.83342 -13.45910 -13.24893 -12.94261 -12.64129 -12.27816 -12.07334 -12.02938 -12.01676 -11.71870 -11.46359 -11.35196 -11.30736 -11.17768 -10.92525 -10.91263 -10.52688 -10.40856 -9.82035 -9.66844 -9.53967 -9.03281 -8.88618 -8.52506 -6.83878 -6.02416 -3.43657 2.18386 2.74662 3.30253 3.33010 3.47039 3.52761 4.40099 4.42717 4.51356 4.67284 4.86681 4.95575 5.04317 5.20555 5.29646 5.34344 5.35492 5.44672 5.49875 5.58923 5.64896 5.68194 5.74779 5.85306 5.98744 6.05131 6.08457 6.17886 6.26778 6.33248 6.45346 6.52699 6.66258 6.69735 6.76057 6.78575 6.92146 7.63582 8.03519 8.34047 8.35432 8.96584 9.69002 10.10412 11.13139 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029298 B = 0.003462 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.472114 B = 8087.002512 C = 8483.039171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.613 5.613 3 C -0.272 4.272 4 H 0.078 0.922 5 C 0.037 3.963 6 N -0.899 5.899 7 Si 0.876 3.124 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.142 3.858 12 C -0.145 4.145 13 C 0.118 3.882 14 N -0.727 5.727 15 C 0.507 3.493 16 O -0.543 6.543 17 C -0.133 4.133 18 C -0.054 4.054 19 H 0.090 0.910 20 C -0.139 4.139 21 C -0.185 4.185 22 C -0.098 4.098 23 C -0.123 4.123 24 H 0.006 0.994 25 H 0.045 0.955 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.400 0.600 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 -17.181 -13.118 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.337 5.337 3 C -0.401 4.401 4 H 0.096 0.904 5 C -0.164 4.164 6 N -0.539 5.539 7 Si 0.706 3.294 8 H -0.212 1.212 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.016 3.984 12 C -0.186 4.186 13 C -0.006 4.006 14 N -0.379 5.379 15 C 0.293 3.707 16 O -0.421 6.421 17 C -0.173 4.173 18 C -0.072 4.072 19 H 0.108 0.892 20 C -0.157 4.157 21 C -0.203 4.203 22 C -0.135 4.135 23 C -0.160 4.160 24 H 0.024 0.976 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.234 0.766 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.021 -17.549 -12.389 21.506 hybrid contribution 0.216 -0.168 0.604 0.664 sum 1.238 -17.718 -11.784 21.315 Atomic orbital electron populations 1.21080 0.84585 0.98997 0.97416 1.44050 1.00803 1.01994 1.86831 1.18783 1.06112 0.90857 1.24333 0.90439 1.25479 0.96820 0.96445 0.97668 1.69874 1.08442 1.36200 1.39429 0.86948 0.78050 0.80078 0.84350 1.21167 1.22800 1.19449 1.21034 0.96544 0.87795 0.93062 1.22375 0.99559 0.94671 1.01961 1.21451 1.00498 0.96720 0.81961 1.46169 1.58152 1.23922 1.09635 1.20699 0.77544 0.80824 0.91592 1.90694 1.50855 1.53996 1.46514 1.21728 1.02280 0.98917 0.94419 1.20824 0.94556 0.95873 0.95994 0.89201 1.23329 0.94270 0.99117 0.98978 1.23232 0.99038 1.00013 0.98004 1.21323 0.95008 0.99462 0.97738 1.22571 0.96955 1.00356 0.96134 0.97550 0.93649 0.95503 0.92668 0.94168 0.92719 0.90571 0.92280 0.91698 0.91994 0.76605 0.88833 0.88753 0.85715 0.86108 0.90986 0.91417 0.90901 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.47 10.70 59.85 0.64 3.11 16 2 N -0.61 -14.57 2.47 -181.12 -0.45 -15.02 16 3 C -0.27 -7.59 9.88 -15.06 -0.15 -7.74 16 4 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 5 C 0.04 1.06 5.29 -17.43 -0.09 0.96 16 6 N -0.90 -27.29 13.97 55.49 0.78 -26.52 16 7 Si 0.88 22.40 25.10 -169.99 -4.27 18.14 16 8 H -0.28 -7.06 6.68 56.52 0.38 -6.68 16 9 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 C 0.14 3.02 4.53 -4.04 -0.02 3.00 16 12 C -0.15 -2.56 5.65 -26.73 -0.15 -2.71 16 13 C 0.12 1.89 5.67 -4.04 -0.02 1.87 16 14 N -0.73 -9.66 5.56 -60.29 -0.33 -9.99 16 15 C 0.51 6.92 7.63 -10.99 -0.08 6.83 16 16 O -0.54 -9.49 14.92 5.56 0.08 -9.41 16 17 C -0.13 -1.27 5.09 -27.89 -0.14 -1.42 16 18 C -0.05 -0.55 2.52 -90.71 -0.23 -0.78 16 19 H 0.09 1.03 7.90 -51.93 -0.41 0.62 16 20 C -0.14 -1.60 9.26 -35.69 -0.33 -1.93 16 21 C -0.18 -1.81 10.77 -35.70 -0.38 -2.20 16 22 C -0.10 -0.79 6.81 -26.82 -0.18 -0.97 16 23 C -0.12 -0.95 6.71 -25.00 -0.17 -1.11 16 24 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 25 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 26 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 29 H 0.05 1.29 3.38 -51.93 -0.18 1.12 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 37 H 0.12 1.65 7.58 -52.49 -0.40 1.26 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.50 7.91 -51.92 -0.41 0.09 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -32.51 338.69 -7.63 -40.14 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.23 Total: 0.63 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.31 Total: -3.07 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.01 Total: -51.53 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.27 Total: 18.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.51 -7.63 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233757795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.393 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds