Wall clock time and date at job start Mon Mar 30 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00029 * 2 1 4 4 H 1.07997 * 119.99744 * 322.03387 * 3 2 1 5 5 C 1.38810 * 120.00354 * 142.03479 * 3 2 1 6 6 N 1.31620 * 120.00613 * 157.02215 * 5 3 2 7 7 Si 1.86807 * 119.99700 * 337.01865 * 5 3 2 8 8 H 1.48500 * 109.46739 * 95.68292 * 7 5 3 9 9 H 1.48500 * 109.47235 * 215.68019 * 7 5 3 10 10 H 1.48499 * 109.47205 * 335.68326 * 7 5 3 11 11 C 1.46503 * 120.00252 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.46906 * 90.00119 * 11 2 1 13 13 C 1.53000 * 109.47258 * 180.02562 * 12 11 2 14 14 N 1.46500 * 109.47321 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99743 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00201 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99804 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47325 * 180.02562 * 17 15 14 19 19 H 1.08995 * 110.34568 * 52.70973 * 18 17 15 20 20 C 1.51110 * 110.38460 * 290.30198 * 18 17 15 21 21 C 1.30522 * 111.10208 * 224.75389 * 20 18 17 22 22 C 1.51097 * 111.11009 * 359.97438 * 21 20 18 23 23 C 1.54636 * 110.39038 * 175.00151 * 18 17 15 24 24 H 1.09001 * 109.47122 * 265.64864 * 1 2 3 25 25 H 1.08995 * 109.46866 * 25.65543 * 1 2 3 26 26 H 1.09000 * 109.46785 * 145.65250 * 1 2 3 27 27 H 0.96991 * 120.00566 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.46839 * 330.00332 * 11 2 1 29 29 H 1.09001 * 109.47127 * 210.00550 * 11 2 1 30 30 H 1.09001 * 109.46994 * 60.00008 * 12 11 2 31 31 H 1.09001 * 109.47579 * 300.00154 * 12 11 2 32 32 H 1.09001 * 109.46908 * 300.00512 * 13 12 11 33 33 H 1.09001 * 109.47154 * 60.00053 * 13 12 11 34 34 H 0.96996 * 120.00183 * 359.97438 * 14 13 12 35 35 H 1.09001 * 109.47455 * 300.00029 * 17 15 14 36 36 H 1.09001 * 109.46996 * 59.99808 * 17 15 14 37 37 H 1.08000 * 124.44517 * 44.72472 * 20 18 17 38 38 H 1.08001 * 124.44259 * 179.97438 * 21 20 18 39 39 H 1.08995 * 110.38692 * 257.63142 * 22 21 20 40 40 H 1.08998 * 110.48587 * 135.29771 * 22 21 20 41 41 H 1.08996 * 111.03402 * 261.47716 * 23 18 17 42 42 H 1.09008 * 111.03421 * 25.36734 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0222 -0.5754 5 6 3.3175 1.3132 0.7395 6 7 4.2044 2.2305 0.4166 7 14 3.6303 0.1825 2.1932 8 1 4.4680 -0.9637 1.7575 9 1 4.3367 0.9338 3.2618 10 1 2.3350 -0.3216 2.7160 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2171 -3.0363 -1.4412 14 7 3.4618 -3.4594 -2.8223 15 6 4.1236 -4.6075 -3.0680 16 8 4.5169 -5.2901 -2.1459 17 6 4.3748 -5.0431 -4.4886 18 6 5.1383 -6.3690 -4.4881 19 1 4.6226 -7.1030 -3.8690 20 6 6.5520 -6.1621 -3.9961 21 6 7.4095 -6.7929 -4.7514 22 6 6.7107 -7.5262 -5.8727 23 6 5.2983 -6.8992 -5.9319 24 1 -0.3633 -0.0780 1.0247 25 1 -0.3633 0.9263 -0.4449 26 1 -0.3633 -0.8485 -0.5798 27 1 5.0205 2.3192 0.9331 28 1 1.6085 -2.0281 0.5147 29 1 3.1499 -1.1381 0.5144 30 1 3.0416 -0.9515 -1.9558 31 1 1.5002 -1.8415 -1.9556 32 1 4.1694 -2.9061 -0.9272 33 1 2.6276 -3.7955 -0.9272 34 1 3.1469 -2.9137 -3.5598 35 1 3.4225 -5.1729 -5.0027 36 1 4.9646 -4.2840 -5.0025 37 1 6.8179 -5.5697 -3.1331 38 1 8.4781 -6.7910 -4.5954 39 1 6.6451 -8.5905 -5.6474 40 1 7.2349 -7.3699 -6.8155 41 1 4.5446 -7.6536 -6.1574 42 1 5.2610 -6.0838 -6.6545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233757795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:26 Heat of formation + Delta-G solvation = -30.869629 kcal Electronic energy + Delta-G solvation = -19877.709273 eV Core-core repulsion = 16857.385648 eV Total energy + Delta-G solvation = -3020.323625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00200 -39.23929 -38.16319 -36.09427 -33.88424 -32.94320 -31.82641 -29.78843 -28.19799 -27.46784 -25.76570 -23.34316 -22.50730 -21.60229 -21.18698 -19.61999 -18.76826 -17.95010 -17.42106 -17.08159 -16.80900 -16.51014 -16.05829 -15.54111 -15.36248 -15.01514 -14.71856 -14.47007 -14.12541 -13.65732 -13.40051 -12.95507 -12.94362 -12.76894 -12.71089 -12.68127 -12.65869 -12.37114 -12.19127 -12.06916 -11.98812 -11.77214 -11.68152 -11.40529 -10.82913 -10.65303 -10.08317 -9.79794 -8.78605 -8.23886 -5.60917 1.27948 1.37576 1.37923 1.48450 1.68751 2.24409 2.38702 3.01775 3.41044 3.64080 3.73534 3.99341 3.99983 4.03811 4.20298 4.36239 4.38240 4.51211 4.55181 4.59355 4.67852 4.69750 4.76365 4.76835 4.78514 4.98639 4.99980 5.03888 5.11557 5.13280 5.22118 5.30089 5.36133 5.43422 5.47731 5.68910 5.92152 5.97526 6.14357 6.60515 6.96988 7.29903 7.60982 8.03374 8.95733 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029298 B = 0.003462 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.472114 B = 8087.002512 C = 8483.039171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.627 5.627 3 C -0.259 4.259 4 H 0.045 0.955 5 C -0.016 4.016 6 N -0.945 5.945 7 Si 0.936 3.064 8 H -0.278 1.278 9 H -0.307 1.307 10 H -0.260 1.260 11 C 0.133 3.867 12 C -0.126 4.126 13 C 0.128 3.872 14 N -0.720 5.720 15 C 0.503 3.497 16 O -0.587 6.587 17 C -0.124 4.124 18 C -0.054 4.054 19 H 0.070 0.930 20 C -0.172 4.172 21 C -0.174 4.174 22 C -0.100 4.100 23 C -0.114 4.114 24 H 0.013 0.987 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.263 0.737 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.068 0.932 34 H 0.415 0.585 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 -19.360 -14.810 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.352 5.352 3 C -0.389 4.389 4 H 0.063 0.937 5 C -0.213 4.213 6 N -0.589 5.589 7 Si 0.765 3.235 8 H -0.205 1.205 9 H -0.235 1.235 10 H -0.185 1.185 11 C 0.008 3.992 12 C -0.166 4.166 13 C 0.003 3.997 14 N -0.373 5.373 15 C 0.291 3.709 16 O -0.467 6.467 17 C -0.163 4.163 18 C -0.073 4.073 19 H 0.089 0.911 20 C -0.190 4.190 21 C -0.192 4.192 22 C -0.137 4.137 23 C -0.152 4.152 24 H 0.031 0.969 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.252 0.748 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.250 -19.747 -14.111 24.272 hybrid contribution 0.574 0.501 1.079 1.321 sum 0.325 -19.247 -13.032 23.246 Atomic orbital electron populations 1.21214 0.82069 1.00540 0.98423 1.44220 1.02473 1.01393 1.87118 1.18699 1.05846 0.91657 1.22713 0.93713 1.26033 0.97036 0.98279 0.99973 1.69983 1.09261 1.38801 1.40817 0.85969 0.78190 0.78384 0.80953 1.20504 1.23545 1.18456 1.21145 0.95520 0.87355 0.95212 1.22082 1.00524 0.94488 0.99518 1.21148 0.98978 0.96076 0.83544 1.46053 1.58116 1.24174 1.08935 1.21487 0.76318 0.80090 0.93002 1.90678 1.52457 1.55294 1.48267 1.21775 1.04082 0.98905 0.91558 1.20825 0.93350 0.95757 0.97383 0.91134 1.23288 0.95943 1.00644 0.99130 1.23533 0.99355 0.98510 0.97836 1.21400 0.95208 0.99526 0.97531 1.22580 0.97070 1.01127 0.94385 0.96899 0.93885 0.91906 0.92825 0.91510 0.95364 0.92967 0.89773 0.94354 0.91418 0.74836 0.85594 0.87187 0.88684 0.85540 0.90300 0.89715 0.89315 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.51 10.70 127.77 1.37 5.88 16 2 N -0.63 -28.94 2.47 -726.95 -1.79 -30.73 16 3 C -0.26 -14.58 9.88 84.03 0.83 -13.75 16 4 H 0.05 2.77 8.06 -2.91 -0.02 2.74 16 5 C -0.02 -0.95 5.29 84.86 0.45 -0.50 16 6 N -0.94 -59.00 13.97 21.65 0.30 -58.70 16 7 Si 0.94 46.91 25.10 68.60 1.72 48.63 16 8 H -0.28 -13.49 6.68 99.48 0.66 -12.82 16 9 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 10 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 11 C 0.13 5.43 4.53 86.38 0.39 5.82 16 12 C -0.13 -4.23 5.65 30.59 0.17 -4.06 16 13 C 0.13 3.96 5.67 86.38 0.49 4.45 16 14 N -0.72 -18.00 5.56 -463.05 -2.57 -20.57 16 15 C 0.50 13.21 7.63 87.66 0.67 13.88 16 16 O -0.59 -20.73 14.92 -3.04 -0.05 -20.77 16 17 C -0.12 -2.07 5.09 29.85 0.15 -1.92 16 18 C -0.05 -1.03 2.52 -10.85 -0.03 -1.05 16 19 H 0.07 1.58 7.90 -2.39 -0.02 1.56 16 20 C -0.17 -3.94 9.26 26.27 0.24 -3.70 16 21 C -0.17 -3.23 10.77 26.27 0.28 -2.94 16 22 C -0.10 -1.33 6.81 30.54 0.21 -1.12 16 23 C -0.11 -1.39 6.71 31.71 0.21 -1.18 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.04 1.59 8.00 -2.39 -0.02 1.57 16 26 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 27 H 0.26 15.62 8.31 -92.72 -0.77 14.85 16 28 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 29 H 0.03 1.31 3.38 -2.39 -0.01 1.30 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.42 7.83 8.47 -92.71 -0.79 7.04 16 35 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.55 8.13 -2.39 -0.02 1.53 16 37 H 0.09 2.70 7.58 -2.91 -0.02 2.68 16 38 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 0.84 7.91 -2.38 -0.02 0.82 16 Total: -1.00 -72.47 338.69 3.21 -69.26 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.15 Total: 13.08 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.44 Total: -0.21 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -4.06 Total: -110.00 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.77 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.72 Total: 48.63 kcal Total: -72.47 3.21 -69.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233757795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.393 kcal (2) G-P(sol) polarization free energy of solvation -72.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds