Wall clock time and date at job start Mon Mar 30 2020 01:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 119.99969 * 2 1 4 4 H 1.08004 * 119.99728 * 203.04728 * 3 2 1 5 5 C 1.38809 * 119.99750 * 23.05169 * 3 2 1 6 6 N 1.31608 * 120.00221 * 12.92242 * 5 3 2 7 7 Si 1.86808 * 119.99685 * 192.92561 * 5 3 2 8 8 H 1.48500 * 109.46819 * 90.00003 * 7 5 3 9 9 H 1.48498 * 109.46970 * 209.99821 * 7 5 3 10 10 H 1.48496 * 109.46955 * 329.99800 * 7 5 3 11 11 C 1.46504 * 120.00244 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47087 * 89.99330 * 11 2 1 13 13 C 1.53004 * 109.46973 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47471 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00155 * 179.97438 * 14 13 12 16 16 O 1.21271 * 120.00232 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99642 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.46686 * 180.02562 * 17 15 14 19 19 H 1.08996 * 110.43718 * 307.34952 * 18 17 15 20 20 C 1.51101 * 110.38844 * 69.70078 * 18 17 15 21 21 C 1.30724 * 111.13875 * 135.34403 * 20 18 17 22 22 C 1.51098 * 110.99198 * 359.84150 * 21 20 18 23 23 C 1.54630 * 104.82632 * 343.70963 * 22 21 20 24 24 H 1.08999 * 109.47124 * 275.11862 * 1 2 3 25 25 H 1.08999 * 109.47457 * 35.11792 * 1 2 3 26 26 H 1.09003 * 109.47516 * 155.12274 * 1 2 3 27 27 H 0.97003 * 120.00140 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.46444 * 329.99646 * 11 2 1 29 29 H 1.08990 * 109.47361 * 210.00010 * 11 2 1 30 30 H 1.08994 * 109.47099 * 60.00832 * 12 11 2 31 31 H 1.08998 * 109.47586 * 299.99898 * 12 11 2 32 32 H 1.09004 * 109.47312 * 59.99950 * 13 12 11 33 33 H 1.09004 * 109.47083 * 300.00583 * 13 12 11 34 34 H 0.97003 * 119.99276 * 359.97438 * 14 13 12 35 35 H 1.09004 * 109.47325 * 60.00566 * 17 15 14 36 36 H 1.08992 * 109.47155 * 299.99890 * 17 15 14 37 37 H 1.08001 * 124.44449 * 315.26230 * 20 18 17 38 38 H 1.08001 * 124.55562 * 179.97438 * 21 20 18 39 39 H 1.08996 * 110.38894 * 224.83933 * 22 21 20 40 40 H 1.09004 * 110.38265 * 102.57617 * 22 21 20 41 41 H 1.09000 * 111.03899 * 142.60682 * 23 22 21 42 42 H 1.08998 * 111.03918 * 266.50519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3400 0.4707 6 7 0.4118 2.2596 1.1459 7 14 2.3159 4.0074 0.1457 8 1 1.7987 4.5534 -1.1347 9 1 1.9759 4.9363 1.2533 10 1 3.7908 3.8577 0.0603 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 3.2169 -3.0352 -1.4438 14 7 3.4615 -3.4573 -2.8252 15 6 4.1242 -4.6047 -3.0719 16 8 4.5176 -5.2879 -2.1504 17 6 4.3753 -5.0391 -4.4929 18 6 5.1399 -6.3643 -4.4934 19 1 6.0333 -6.2885 -3.8737 20 6 4.2523 -7.4844 -4.0026 21 6 4.3697 -8.5446 -4.7583 22 6 5.3528 -8.3035 -5.8801 23 6 5.5186 -6.7672 -5.9376 24 1 -0.3633 0.0917 1.0236 25 1 -0.3634 0.8406 -0.5912 26 1 -0.3634 -0.9323 -0.4323 27 1 -0.0149 3.0661 1.4751 28 1 1.6084 -2.0286 0.5130 29 1 3.1498 -1.1386 0.5133 30 1 3.0415 -0.9501 -1.9568 31 1 1.5000 -1.8400 -1.9571 32 1 2.6275 -3.7949 -0.9303 33 1 4.1693 -2.9054 -0.9298 34 1 3.1465 -2.9109 -3.5622 35 1 4.9643 -4.2792 -5.0065 36 1 3.4229 -5.1694 -5.0067 37 1 3.6064 -7.4184 -3.1395 38 1 3.8339 -9.4695 -4.6036 39 1 4.9529 -8.6778 -6.8224 40 1 6.3073 -8.7804 -5.6573 41 1 6.5493 -6.4930 -6.1628 42 1 4.8320 -6.3263 -6.6602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233757799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:30 Heat of formation + Delta-G solvation = -14.016109 kcal Electronic energy + Delta-G solvation = -19533.366967 eV Core-core repulsion = 16513.774165 eV Total energy + Delta-G solvation = -3019.592802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.03596 -38.40082 -36.23736 -34.70693 -32.27647 -31.55475 -29.85851 -29.12639 -26.35449 -25.80115 -24.58462 -21.95491 -20.88885 -20.60938 -19.96040 -18.83447 -16.98021 -16.72547 -16.09990 -16.01301 -15.53306 -15.09639 -14.69557 -14.35730 -13.73109 -13.38909 -13.07859 -12.78378 -12.65445 -12.25581 -12.07098 -12.05396 -11.68193 -11.49777 -11.45772 -11.29487 -11.01622 -10.98342 -10.80286 -10.78059 -10.47467 -10.19682 -9.87624 -9.79989 -9.72240 -9.06998 -8.93297 -8.54357 -6.73711 -5.71466 -3.18792 2.12567 2.69929 3.27474 3.38094 3.44205 3.45763 4.35993 4.39023 4.50153 4.63526 4.82299 5.00493 5.15877 5.21832 5.29490 5.31938 5.41222 5.44004 5.47151 5.55762 5.62977 5.70718 5.82719 5.90728 5.94714 6.05028 6.11449 6.21038 6.39888 6.42224 6.60904 6.73383 6.75065 6.77153 6.94472 7.37777 7.58412 7.73864 7.81090 8.29164 8.41049 9.24784 9.88367 10.37513 11.33332 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.044837 B = 0.002727 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.330342 B =10265.365248 C =10597.715738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.604 5.604 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.120 3.880 14 N -0.729 5.729 15 C 0.508 3.492 16 O -0.543 6.543 17 C -0.134 4.134 18 C -0.054 4.054 19 H 0.091 0.909 20 C -0.139 4.139 21 C -0.185 4.185 22 C -0.099 4.099 23 C -0.123 4.123 24 H 0.031 0.969 25 H 0.040 0.960 26 H -0.003 1.003 27 H 0.252 0.748 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.400 0.600 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.028 -17.293 -14.704 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.004 4.004 14 N -0.380 5.380 15 C 0.294 3.706 16 O -0.420 6.420 17 C -0.174 4.174 18 C -0.072 4.072 19 H 0.109 0.891 20 C -0.157 4.157 21 C -0.203 4.203 22 C -0.136 4.136 23 C -0.160 4.160 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.192 -17.620 -13.925 23.581 hybrid contribution 0.067 1.292 -0.439 1.366 sum 7.259 -16.328 -14.363 22.926 Atomic orbital electron populations 1.20788 0.82685 0.95294 0.99481 1.43901 1.01854 1.00699 1.86176 1.19190 0.98255 0.85629 1.35391 0.91438 1.25041 0.97944 0.98580 0.98220 1.70068 1.19490 1.27168 1.38583 0.86248 0.78753 0.84139 0.77365 1.21541 1.21738 1.20484 1.20598 0.96330 0.88483 0.91889 1.22521 0.99441 0.94273 1.02847 1.21437 1.00293 0.96887 0.81777 1.46204 1.58105 1.23980 1.09751 1.20686 0.77630 0.80739 0.91565 1.90692 1.51011 1.53777 1.46552 1.21730 1.02623 0.98575 0.94459 1.20821 0.98139 0.92271 0.96019 0.89144 1.23368 0.98498 0.94913 0.98921 1.23291 1.00047 0.98928 0.98019 1.21325 0.98563 0.95973 0.97730 1.22567 1.01746 0.95601 0.96120 0.95081 0.94171 0.98424 0.93757 0.94446 0.93300 0.91597 0.92285 0.91916 0.91753 0.76664 0.88786 0.88853 0.85761 0.86082 0.91430 0.90956 0.90851 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.98 59.84 0.54 4.56 16 2 N -0.60 -15.23 2.92 -181.12 -0.53 -15.76 16 3 C -0.26 -7.02 9.65 -15.06 -0.15 -7.16 16 4 H 0.07 1.81 7.86 -52.48 -0.41 1.40 16 5 C 0.00 0.01 5.10 -17.44 -0.09 -0.08 16 6 N -0.91 -26.72 10.71 55.49 0.59 -26.12 16 7 Si 0.90 21.87 29.57 -169.99 -5.03 16.84 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 C 0.16 3.15 5.64 -4.04 -0.02 3.12 16 12 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 13 C 0.12 1.73 5.67 -4.04 -0.02 1.71 16 14 N -0.73 -8.86 5.56 -60.29 -0.33 -9.20 16 15 C 0.51 6.42 7.63 -10.98 -0.08 6.33 16 16 O -0.54 -8.91 14.92 5.56 0.08 -8.82 16 17 C -0.13 -1.18 5.09 -27.88 -0.14 -1.32 16 18 C -0.05 -0.51 2.52 -90.71 -0.23 -0.74 16 19 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 20 C -0.14 -1.46 9.27 -35.75 -0.33 -1.79 16 21 C -0.18 -1.65 10.79 -35.75 -0.39 -2.04 16 22 C -0.10 -0.73 6.80 -26.83 -0.18 -0.92 16 23 C -0.12 -0.88 6.71 -25.01 -0.17 -1.05 16 24 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 25 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 26 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 3.90 8.47 -40.82 -0.35 3.56 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.12 1.48 7.58 -52.49 -0.40 1.08 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -31.95 342.71 -8.82 -40.77 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.36 Total: -0.88 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.42 Total: -1.99 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.27 Total: -51.08 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.95 -8.82 -40.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233757799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.752 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds