Wall clock time and date at job start Mon Mar 30 2020 01:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 119.99969 * 2 1 4 4 H 1.08004 * 119.99728 * 203.04728 * 3 2 1 5 5 C 1.38809 * 119.99750 * 23.05169 * 3 2 1 6 6 N 1.31608 * 120.00221 * 12.92242 * 5 3 2 7 7 Si 1.86808 * 119.99685 * 192.92561 * 5 3 2 8 8 H 1.48500 * 109.46819 * 90.00003 * 7 5 3 9 9 H 1.48498 * 109.46970 * 209.99821 * 7 5 3 10 10 H 1.48496 * 109.46955 * 329.99800 * 7 5 3 11 11 C 1.46504 * 120.00244 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47087 * 89.99330 * 11 2 1 13 13 C 1.53004 * 109.46973 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47471 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00155 * 179.97438 * 14 13 12 16 16 O 1.21271 * 120.00232 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99642 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.46686 * 180.02562 * 17 15 14 19 19 H 1.08996 * 110.43718 * 307.34952 * 18 17 15 20 20 C 1.51101 * 110.38844 * 69.70078 * 18 17 15 21 21 C 1.30724 * 111.13875 * 135.34403 * 20 18 17 22 22 C 1.51098 * 110.99198 * 359.84150 * 21 20 18 23 23 C 1.54630 * 104.82632 * 343.70963 * 22 21 20 24 24 H 1.08999 * 109.47124 * 275.11862 * 1 2 3 25 25 H 1.08999 * 109.47457 * 35.11792 * 1 2 3 26 26 H 1.09003 * 109.47516 * 155.12274 * 1 2 3 27 27 H 0.97003 * 120.00140 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.46444 * 329.99646 * 11 2 1 29 29 H 1.08990 * 109.47361 * 210.00010 * 11 2 1 30 30 H 1.08994 * 109.47099 * 60.00832 * 12 11 2 31 31 H 1.08998 * 109.47586 * 299.99898 * 12 11 2 32 32 H 1.09004 * 109.47312 * 59.99950 * 13 12 11 33 33 H 1.09004 * 109.47083 * 300.00583 * 13 12 11 34 34 H 0.97003 * 119.99276 * 359.97438 * 14 13 12 35 35 H 1.09004 * 109.47325 * 60.00566 * 17 15 14 36 36 H 1.08992 * 109.47155 * 299.99890 * 17 15 14 37 37 H 1.08001 * 124.44449 * 315.26230 * 20 18 17 38 38 H 1.08001 * 124.55562 * 179.97438 * 21 20 18 39 39 H 1.08996 * 110.38894 * 224.83933 * 22 21 20 40 40 H 1.09004 * 110.38265 * 102.57617 * 22 21 20 41 41 H 1.09000 * 111.03899 * 142.60682 * 23 22 21 42 42 H 1.08998 * 111.03918 * 266.50519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3400 0.4707 6 7 0.4118 2.2596 1.1459 7 14 2.3159 4.0074 0.1457 8 1 1.7987 4.5534 -1.1347 9 1 1.9759 4.9363 1.2533 10 1 3.7908 3.8577 0.0603 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 3.2169 -3.0352 -1.4438 14 7 3.4615 -3.4573 -2.8252 15 6 4.1242 -4.6047 -3.0719 16 8 4.5176 -5.2879 -2.1504 17 6 4.3753 -5.0391 -4.4929 18 6 5.1399 -6.3643 -4.4934 19 1 6.0333 -6.2885 -3.8737 20 6 4.2523 -7.4844 -4.0026 21 6 4.3697 -8.5446 -4.7583 22 6 5.3528 -8.3035 -5.8801 23 6 5.5186 -6.7672 -5.9376 24 1 -0.3633 0.0917 1.0236 25 1 -0.3634 0.8406 -0.5912 26 1 -0.3634 -0.9323 -0.4323 27 1 -0.0149 3.0661 1.4751 28 1 1.6084 -2.0286 0.5130 29 1 3.1498 -1.1386 0.5133 30 1 3.0415 -0.9501 -1.9568 31 1 1.5000 -1.8400 -1.9571 32 1 2.6275 -3.7949 -0.9303 33 1 4.1693 -2.9054 -0.9298 34 1 3.1465 -2.9109 -3.5622 35 1 4.9643 -4.2792 -5.0065 36 1 3.4229 -5.1694 -5.0067 37 1 3.6064 -7.4184 -3.1395 38 1 3.8339 -9.4695 -4.6036 39 1 4.9529 -8.6778 -6.8224 40 1 6.3073 -8.7804 -5.6573 41 1 6.5493 -6.4930 -6.1628 42 1 4.8320 -6.3263 -6.6602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233757799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:29 Heat of formation + Delta-G solvation = -33.335031 kcal Electronic energy + Delta-G solvation = -19534.204698 eV Core-core repulsion = 16513.774165 eV Total energy + Delta-G solvation = -3020.430533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97086 -39.19733 -37.92675 -36.11591 -33.81862 -32.66200 -31.39476 -29.75968 -27.98383 -27.41982 -25.79335 -23.50455 -22.16676 -21.48664 -21.11159 -19.58970 -18.72854 -17.89736 -17.24731 -16.86798 -16.68202 -16.58451 -15.89092 -15.54355 -15.29077 -14.81895 -14.58794 -14.41345 -13.76157 -13.31788 -13.08582 -12.89010 -12.77385 -12.74837 -12.65772 -12.63312 -12.49362 -12.28679 -12.09683 -12.06263 -11.97944 -11.84069 -11.66870 -11.48655 -10.82577 -10.61822 -10.03909 -9.76642 -8.78120 -7.82335 -5.32338 1.39467 1.47278 1.47919 1.57130 1.71882 2.28102 2.52239 3.30879 3.64732 3.67132 3.75541 4.00609 4.03326 4.11796 4.30547 4.38289 4.47372 4.56889 4.59965 4.65339 4.69226 4.78996 4.80995 4.85729 4.93513 5.00109 5.03234 5.12565 5.25480 5.29177 5.31292 5.43945 5.48569 5.52228 5.63537 5.70353 5.71026 6.00323 6.33306 6.63388 7.15522 7.32734 7.87543 8.31431 9.20866 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.044837 B = 0.002727 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.330342 B =10265.365248 C =10597.715738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.622 5.622 3 C -0.261 4.261 4 H 0.072 0.928 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.284 1.284 9 H -0.296 1.296 10 H -0.268 1.268 11 C 0.150 3.850 12 C -0.126 4.126 13 C 0.131 3.869 14 N -0.722 5.722 15 C 0.504 3.496 16 O -0.586 6.586 17 C -0.125 4.125 18 C -0.055 4.055 19 H 0.068 0.932 20 C -0.168 4.168 21 C -0.175 4.175 22 C -0.101 4.101 23 C -0.116 4.116 24 H 0.003 0.997 25 H 0.015 0.985 26 H 0.033 0.967 27 H 0.248 0.752 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.414 0.586 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.983 -17.833 -17.247 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.345 5.345 3 C -0.391 4.391 4 H 0.090 0.910 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.799 3.201 8 H -0.211 1.211 9 H -0.223 1.223 10 H -0.192 1.192 11 C 0.023 3.977 12 C -0.167 4.167 13 C 0.007 3.993 14 N -0.374 5.374 15 C 0.292 3.708 16 O -0.466 6.466 17 C -0.164 4.164 18 C -0.074 4.074 19 H 0.086 0.914 20 C -0.186 4.186 21 C -0.193 4.193 22 C -0.138 4.138 23 C -0.153 4.153 24 H 0.021 0.979 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.250 0.750 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.165 -18.180 -16.510 25.880 hybrid contribution -0.220 1.332 0.381 1.403 sum 7.944 -16.848 -16.129 24.640 Atomic orbital electron populations 1.20545 0.82825 0.95995 0.97600 1.44171 1.02163 1.01767 1.86428 1.19532 0.98495 0.86715 1.34398 0.91031 1.25847 0.98734 1.02083 0.98563 1.70238 1.20966 1.27618 1.40003 0.85212 0.78424 0.79660 0.76833 1.21119 1.22320 1.19247 1.20780 0.95635 0.86872 0.94403 1.22140 0.99895 0.94871 0.99776 1.21120 0.99335 0.95643 0.83237 1.46081 1.57980 1.24216 1.09144 1.21413 0.76500 0.80000 0.92863 1.90678 1.52691 1.54993 1.48249 1.21771 1.04007 0.98847 0.91786 1.20818 0.97041 0.92315 0.97233 0.91394 1.23325 0.99696 0.96483 0.99137 1.23578 0.99389 0.98536 0.97775 1.21399 0.98291 0.96407 0.97693 1.22576 1.02855 0.95308 0.94558 0.97911 0.96569 0.94896 0.94300 0.93433 0.93953 0.92134 0.91646 0.92390 0.92786 0.74966 0.86135 0.86855 0.88199 0.85304 0.89760 0.90493 0.89658 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 8.98 127.77 1.15 9.86 16 2 N -0.62 -31.21 2.92 -726.94 -2.12 -33.33 16 3 C -0.26 -14.32 9.65 84.03 0.81 -13.51 16 4 H 0.07 3.78 7.86 -2.91 -0.02 3.76 16 5 C -0.06 -3.24 5.10 84.86 0.43 -2.81 16 6 N -0.94 -56.34 10.71 21.65 0.23 -56.11 16 7 Si 0.97 45.04 29.57 68.60 2.03 47.07 16 8 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 9 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 C 0.15 5.95 5.64 86.38 0.49 6.44 16 12 C -0.13 -3.96 5.65 30.60 0.17 -3.79 16 13 C 0.13 3.66 5.67 86.38 0.49 4.15 16 14 N -0.72 -16.30 5.56 -463.06 -2.57 -18.87 16 15 C 0.50 12.18 7.63 87.66 0.67 12.85 16 16 O -0.59 -19.39 14.92 -3.00 -0.04 -19.43 16 17 C -0.12 -1.90 5.09 29.85 0.15 -1.75 16 18 C -0.06 -0.97 2.52 -10.85 -0.03 -1.00 16 19 H 0.07 1.48 7.90 -2.39 -0.02 1.46 16 20 C -0.17 -3.46 9.27 26.06 0.24 -3.22 16 21 C -0.17 -2.89 10.79 26.06 0.28 -2.61 16 22 C -0.10 -1.24 6.80 30.53 0.21 -1.03 16 23 C -0.12 -1.33 6.71 31.71 0.21 -1.11 16 24 H 0.00 0.14 7.34 -2.39 -0.02 0.13 16 25 H 0.02 0.84 7.34 -2.39 -0.02 0.82 16 26 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 27 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.05 1.78 8.07 -2.38 -0.02 1.76 16 29 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.41 6.99 8.47 -92.71 -0.79 6.21 16 35 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.11 1.33 8.12 -2.39 -0.02 1.31 16 37 H 0.10 2.50 7.58 -2.91 -0.02 2.48 16 38 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.09 0.77 7.91 -2.39 -0.02 0.75 16 Total: -1.00 -69.70 342.71 2.99 -66.71 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.19 Total: 11.51 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 5.28 Total: 2.46 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -4.46 Total: -108.31 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.04 Total: -19.43 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -69.70 2.99 -66.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233757799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.372 kcal (2) G-P(sol) polarization free energy of solvation -69.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds