Wall clock time and date at job start Mon Mar 30 2020 01:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 120.00260 * 2 1 4 4 H 1.07994 * 120.00210 * 200.36218 * 3 2 1 5 5 C 1.38819 * 119.99718 * 20.37169 * 3 2 1 6 6 N 1.31614 * 119.99985 * 14.97962 * 5 3 2 7 7 Si 1.86803 * 119.99797 * 194.98552 * 5 3 2 8 8 H 1.48502 * 109.47227 * 84.99945 * 7 5 3 9 9 H 1.48493 * 109.47032 * 204.99857 * 7 5 3 10 10 H 1.48503 * 109.47025 * 325.00026 * 7 5 3 11 11 C 1.46503 * 119.99823 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46714 * 269.99646 * 11 2 1 13 13 C 1.53002 * 109.47104 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47134 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99901 * 179.97438 * 14 13 12 16 16 O 1.21281 * 120.00050 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00059 * 180.02562 * 15 14 13 18 18 H 1.08997 * 109.64376 * 59.58057 * 17 15 14 19 19 C 1.53022 * 109.63947 * 298.94509 * 17 15 14 20 20 C 1.50070 * 110.14658 * 190.88214 * 19 17 15 21 21 C 1.29444 * 124.07460 * 17.12351 * 20 19 17 22 22 C 1.50062 * 124.07644 * 359.53814 * 21 20 19 23 23 C 1.53029 * 110.14877 * 17.13082 * 22 21 20 24 24 H 1.08999 * 109.46779 * 275.09075 * 1 2 3 25 25 H 1.09001 * 109.47282 * 35.09108 * 1 2 3 26 26 H 1.08993 * 109.47466 * 155.09274 * 1 2 3 27 27 H 0.97004 * 119.99672 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47026 * 150.00028 * 11 2 1 29 29 H 1.09001 * 109.46917 * 29.99424 * 11 2 1 30 30 H 1.08998 * 109.47488 * 60.00078 * 12 11 2 31 31 H 1.08998 * 109.47511 * 300.00026 * 12 11 2 32 32 H 1.08998 * 109.46874 * 300.00313 * 13 12 11 33 33 H 1.08998 * 109.46968 * 59.99657 * 13 12 11 34 34 H 0.96998 * 120.00482 * 0.02562 * 14 13 12 35 35 H 1.08998 * 109.36110 * 311.08486 * 19 17 15 36 36 H 1.08995 * 109.36454 * 70.67309 * 19 17 15 37 37 H 1.08003 * 117.96323 * 197.11303 * 20 19 17 38 38 H 1.08006 * 117.96262 * 179.51107 * 21 20 19 39 39 H 1.09001 * 109.36273 * 256.91917 * 22 21 20 40 40 H 1.09008 * 109.24736 * 137.26572 * 22 21 20 41 41 H 1.08993 * 109.64085 * 190.88116 * 23 22 21 42 42 H 1.08992 * 109.64222 * 70.24468 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1791 1.2151 -0.3254 5 6 1.5207 2.3504 0.4185 6 7 0.3877 2.2835 1.0847 7 14 2.2825 4.0126 0.0359 8 1 1.8683 4.4461 -1.3226 9 1 1.8225 5.0098 1.0354 10 1 3.7625 3.9032 0.0908 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2180 -3.0357 1.4413 14 7 3.4627 -3.4588 2.8223 15 6 4.1254 -4.6064 3.0682 16 8 4.5186 -5.2891 2.1461 17 6 4.3766 -5.0420 4.4888 18 1 3.4261 -5.1662 5.0075 19 6 5.2257 -3.9906 5.2065 20 6 5.7047 -4.5249 6.5246 21 6 5.7095 -5.7804 6.8396 22 6 5.2277 -6.8762 5.9346 23 6 5.1437 -6.3704 4.4928 24 1 -0.3633 0.0912 1.0236 25 1 -0.3634 0.8409 -0.5908 26 1 -0.3634 -0.9320 -0.4328 27 1 -0.0520 3.0973 1.3768 28 1 3.1499 -1.1382 -0.5143 29 1 1.6083 -2.0282 -0.5147 30 1 1.5001 -1.8415 1.9556 31 1 3.0416 -0.9516 1.9559 32 1 2.6293 -3.7953 0.9270 33 1 4.1704 -2.9048 0.9276 34 1 3.1473 -2.9135 3.5598 35 1 6.0850 -3.7353 4.5865 36 1 4.6264 -3.0960 5.3756 37 1 6.0680 -3.8179 7.2557 38 1 6.0841 -6.0566 7.8142 39 1 4.2410 -7.2060 6.2599 40 1 5.9230 -7.7144 5.9834 41 1 4.6159 -7.1000 3.8787 42 1 6.1483 -6.2145 4.1000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233835978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:38 Heat of formation + Delta-G solvation = -21.505736 kcal Electronic energy + Delta-G solvation = -19894.433257 eV Core-core repulsion = 16874.515681 eV Total energy + Delta-G solvation = -3019.917576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17354 -37.83287 -36.20460 -34.71940 -32.22621 -31.39629 -30.98469 -29.71561 -26.00691 -25.49129 -23.93022 -22.95563 -21.71025 -20.62497 -19.79881 -18.15944 -17.27828 -16.75026 -16.07854 -15.58471 -15.28406 -14.74751 -14.37573 -14.07389 -13.88843 -13.55913 -13.39044 -13.06818 -13.01580 -12.66991 -12.46601 -12.37915 -11.60300 -11.33478 -11.20439 -11.06151 -10.98080 -10.83064 -10.73334 -10.57655 -10.47307 -10.09469 -9.91291 -9.77730 -9.60916 -9.25622 -8.89153 -8.54588 -6.79324 -5.73048 -3.16550 2.03285 2.70363 3.30161 3.38788 3.44934 3.45616 4.39553 4.44644 4.50481 4.65236 4.97331 5.00418 5.06843 5.20767 5.28377 5.30771 5.42743 5.43999 5.53919 5.61599 5.68357 5.72152 5.87415 5.96174 5.98254 6.09224 6.13919 6.26374 6.38664 6.44279 6.64424 6.68063 6.75548 6.83093 7.01030 7.37772 7.62732 7.71498 7.80951 8.31243 8.38919 9.23504 9.87715 10.35843 11.32190 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028512 B = 0.003271 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.817590 B = 8557.576949 C = 9075.696582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.254 4.254 4 H 0.069 0.931 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.119 3.881 14 N -0.725 5.725 15 C 0.513 3.487 16 O -0.546 6.546 17 C -0.108 4.108 18 H 0.098 0.902 19 C -0.083 4.083 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.093 4.093 23 C -0.099 4.099 24 H 0.028 0.972 25 H 0.043 0.957 26 H -0.002 1.002 27 H 0.252 0.748 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.400 0.600 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 -15.171 10.536 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.325 5.325 3 C -0.384 4.384 4 H 0.087 0.913 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.005 4.005 14 N -0.376 5.376 15 C 0.299 3.701 16 O -0.423 6.423 17 C -0.130 4.130 18 H 0.116 0.884 19 C -0.120 4.120 20 C -0.170 4.170 21 C -0.176 4.176 22 C -0.130 4.130 23 C -0.137 4.137 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.235 0.765 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.515 -15.493 9.895 19.860 hybrid contribution 0.156 1.374 0.472 1.461 sum 7.672 -14.119 10.368 19.123 Atomic orbital electron populations 1.20799 0.82523 0.95522 0.99379 1.44006 1.01965 1.00741 1.85817 1.19236 0.97005 0.85042 1.37071 0.91280 1.24970 0.97911 0.98362 0.98602 1.70085 1.18874 1.26758 1.39632 0.86279 0.78636 0.84024 0.77645 1.21475 1.21796 1.20572 1.20712 0.95966 0.88180 0.92323 1.22550 0.99590 0.94046 1.02897 1.21503 1.00214 0.97053 0.81722 1.46211 1.57716 1.23804 1.09858 1.20599 0.77523 0.80842 0.91116 1.90681 1.51261 1.54029 1.46369 1.21411 1.00995 0.97382 0.93175 0.88413 1.20426 0.99690 0.97485 0.94441 1.22004 1.00989 0.96495 0.97537 1.22086 1.01024 0.94662 0.99795 1.20508 1.01412 0.97067 0.93978 1.21416 1.01017 0.95265 0.95996 0.95345 0.93865 0.98353 0.93798 0.93626 0.94272 0.92199 0.91330 0.92023 0.91863 0.76546 0.90214 0.90253 0.87579 0.87938 0.90780 0.90770 0.90677 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.02 59.85 0.54 4.54 16 2 N -0.60 -15.11 2.93 -181.12 -0.53 -15.64 16 3 C -0.25 -6.95 9.68 -15.06 -0.15 -7.10 16 4 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 5 C 0.00 -0.01 5.06 -17.43 -0.09 -0.10 16 6 N -0.91 -26.30 10.67 55.49 0.59 -25.70 16 7 Si 0.90 21.78 29.58 -169.99 -5.03 16.75 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.16 3.15 5.71 -4.04 -0.02 3.12 16 12 C -0.15 -2.63 5.65 -26.73 -0.15 -2.78 16 13 C 0.12 1.80 5.67 -4.04 -0.02 1.77 16 14 N -0.73 -9.53 5.47 -60.30 -0.33 -9.86 16 15 C 0.51 6.99 7.13 -10.99 -0.08 6.91 16 16 O -0.55 -9.46 15.90 5.56 0.09 -9.37 16 17 C -0.11 -1.10 2.58 -91.56 -0.24 -1.34 16 18 H 0.10 0.88 8.13 -51.93 -0.42 0.46 16 19 C -0.08 -0.76 5.29 -28.18 -0.15 -0.91 16 20 C -0.15 -1.27 9.80 -35.90 -0.35 -1.63 16 21 C -0.16 -1.25 9.80 -35.90 -0.35 -1.61 16 22 C -0.09 -0.72 6.12 -28.18 -0.17 -0.90 16 23 C -0.10 -0.99 4.69 -26.51 -0.12 -1.11 16 24 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 25 H 0.04 1.14 7.21 -51.93 -0.37 0.77 16 26 H 0.00 -0.04 7.83 -51.93 -0.41 -0.45 16 27 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.32 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.40 4.48 8.22 -40.82 -0.34 4.15 16 35 H 0.08 0.80 8.10 -51.93 -0.42 0.37 16 36 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 37 H 0.11 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.10 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 41 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 42 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -31.36 339.98 -8.78 -40.14 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.34 Total: -0.33 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.36 Total: -1.11 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.27 Total: -51.20 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.36 -8.78 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233835978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.635 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds