Wall clock time and date at job start Mon Mar 30 2020 01:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 120.00260 * 2 1 4 4 H 1.07994 * 120.00210 * 200.36218 * 3 2 1 5 5 C 1.38819 * 119.99718 * 20.37169 * 3 2 1 6 6 N 1.31614 * 119.99985 * 14.97962 * 5 3 2 7 7 Si 1.86803 * 119.99797 * 194.98552 * 5 3 2 8 8 H 1.48502 * 109.47227 * 84.99945 * 7 5 3 9 9 H 1.48493 * 109.47032 * 204.99857 * 7 5 3 10 10 H 1.48503 * 109.47025 * 325.00026 * 7 5 3 11 11 C 1.46503 * 119.99823 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46714 * 269.99646 * 11 2 1 13 13 C 1.53002 * 109.47104 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47134 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99901 * 179.97438 * 14 13 12 16 16 O 1.21281 * 120.00050 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00059 * 180.02562 * 15 14 13 18 18 H 1.08997 * 109.64376 * 59.58057 * 17 15 14 19 19 C 1.53022 * 109.63947 * 298.94509 * 17 15 14 20 20 C 1.50070 * 110.14658 * 190.88214 * 19 17 15 21 21 C 1.29444 * 124.07460 * 17.12351 * 20 19 17 22 22 C 1.50062 * 124.07644 * 359.53814 * 21 20 19 23 23 C 1.53029 * 110.14877 * 17.13082 * 22 21 20 24 24 H 1.08999 * 109.46779 * 275.09075 * 1 2 3 25 25 H 1.09001 * 109.47282 * 35.09108 * 1 2 3 26 26 H 1.08993 * 109.47466 * 155.09274 * 1 2 3 27 27 H 0.97004 * 119.99672 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47026 * 150.00028 * 11 2 1 29 29 H 1.09001 * 109.46917 * 29.99424 * 11 2 1 30 30 H 1.08998 * 109.47488 * 60.00078 * 12 11 2 31 31 H 1.08998 * 109.47511 * 300.00026 * 12 11 2 32 32 H 1.08998 * 109.46874 * 300.00313 * 13 12 11 33 33 H 1.08998 * 109.46968 * 59.99657 * 13 12 11 34 34 H 0.96998 * 120.00482 * 0.02562 * 14 13 12 35 35 H 1.08998 * 109.36110 * 311.08486 * 19 17 15 36 36 H 1.08995 * 109.36454 * 70.67309 * 19 17 15 37 37 H 1.08003 * 117.96323 * 197.11303 * 20 19 17 38 38 H 1.08006 * 117.96262 * 179.51107 * 21 20 19 39 39 H 1.09001 * 109.36273 * 256.91917 * 22 21 20 40 40 H 1.09008 * 109.24736 * 137.26572 * 22 21 20 41 41 H 1.08993 * 109.64085 * 190.88116 * 23 22 21 42 42 H 1.08992 * 109.64222 * 70.24468 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1791 1.2151 -0.3254 5 6 1.5207 2.3504 0.4185 6 7 0.3877 2.2835 1.0847 7 14 2.2825 4.0126 0.0359 8 1 1.8683 4.4461 -1.3226 9 1 1.8225 5.0098 1.0354 10 1 3.7625 3.9032 0.0908 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 6 3.2180 -3.0357 1.4413 14 7 3.4627 -3.4588 2.8223 15 6 4.1254 -4.6064 3.0682 16 8 4.5186 -5.2891 2.1461 17 6 4.3766 -5.0420 4.4888 18 1 3.4261 -5.1662 5.0075 19 6 5.2257 -3.9906 5.2065 20 6 5.7047 -4.5249 6.5246 21 6 5.7095 -5.7804 6.8396 22 6 5.2277 -6.8762 5.9346 23 6 5.1437 -6.3704 4.4928 24 1 -0.3633 0.0912 1.0236 25 1 -0.3634 0.8409 -0.5908 26 1 -0.3634 -0.9320 -0.4328 27 1 -0.0520 3.0973 1.3768 28 1 3.1499 -1.1382 -0.5143 29 1 1.6083 -2.0282 -0.5147 30 1 1.5001 -1.8415 1.9556 31 1 3.0416 -0.9516 1.9559 32 1 2.6293 -3.7953 0.9270 33 1 4.1704 -2.9048 0.9276 34 1 3.1473 -2.9135 3.5598 35 1 6.0850 -3.7353 4.5865 36 1 4.6264 -3.0960 5.3756 37 1 6.0680 -3.8179 7.2557 38 1 6.0841 -6.0566 7.8142 39 1 4.2410 -7.2060 6.2599 40 1 5.9230 -7.7144 5.9834 41 1 4.6159 -7.1000 3.8787 42 1 6.1483 -6.2145 4.1000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233835978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:37 Heat of formation + Delta-G solvation = -40.047202 kcal Electronic energy + Delta-G solvation = -19895.237275 eV Core-core repulsion = 16874.515681 eV Total energy + Delta-G solvation = -3020.721595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19706 -38.71073 -37.89372 -36.17399 -33.81865 -32.52262 -31.77677 -31.16713 -27.95828 -27.07314 -24.88600 -23.96272 -23.08090 -22.14640 -21.02732 -18.86418 -18.76082 -18.22415 -17.24022 -16.76926 -16.58254 -16.32195 -15.66430 -15.28420 -15.10805 -14.75326 -14.62748 -14.50596 -14.18143 -13.94523 -13.42578 -13.16796 -13.13616 -12.98832 -12.79563 -12.69706 -12.45488 -12.28457 -12.02367 -11.98194 -11.85563 -11.70543 -11.46972 -11.31413 -10.74441 -10.61571 -10.08113 -9.86931 -8.82045 -7.82426 -5.28077 1.42439 1.47257 1.49185 1.56807 1.61907 2.22202 2.52517 3.31349 3.57653 3.66452 3.72245 3.86473 4.12344 4.19030 4.28549 4.34539 4.41090 4.46989 4.50360 4.62700 4.65992 4.73074 4.80382 4.87385 4.90896 4.91650 5.05367 5.06315 5.26230 5.29961 5.32044 5.33836 5.42217 5.50327 5.64925 5.72896 5.77837 6.06741 6.33074 6.55475 7.15864 7.23117 7.88629 8.31301 9.21173 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028512 B = 0.003271 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.817590 B = 8557.576949 C = 9075.696582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.620 5.620 3 C -0.263 4.263 4 H 0.071 0.929 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.966 3.034 8 H -0.287 1.287 9 H -0.295 1.295 10 H -0.270 1.270 11 C 0.150 3.850 12 C -0.129 4.129 13 C 0.132 3.868 14 N -0.719 5.719 15 C 0.513 3.487 16 O -0.586 6.586 17 C -0.101 4.101 18 H 0.116 0.884 19 C -0.081 4.081 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.090 4.090 23 C -0.099 4.099 24 H 0.006 0.994 25 H 0.015 0.985 26 H 0.031 0.969 27 H 0.247 0.753 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.411 0.589 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.057 -15.920 11.549 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.343 5.343 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.221 1.221 10 H -0.194 1.194 11 C 0.024 3.976 12 C -0.169 4.169 13 C 0.007 3.993 14 N -0.370 5.370 15 C 0.300 3.700 16 O -0.466 6.466 17 C -0.122 4.122 18 H 0.134 0.866 19 C -0.119 4.119 20 C -0.181 4.181 21 C -0.175 4.175 22 C -0.127 4.127 23 C -0.137 4.137 24 H 0.024 0.976 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.248 0.752 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.228 -16.260 10.923 21.246 hybrid contribution -0.044 1.521 0.118 1.527 sum 8.185 -14.738 11.041 20.152 Atomic orbital electron populations 1.20567 0.82696 0.95990 0.97747 1.44241 1.02246 1.01806 1.86053 1.19545 0.97193 0.86261 1.36283 0.91122 1.25705 0.98629 1.01540 0.98967 1.70238 1.20178 1.27108 1.40873 0.85295 0.78322 0.79901 0.76999 1.21422 1.22146 1.19450 1.20892 0.95958 0.86787 0.93986 1.22191 0.99338 0.94683 1.00719 1.21206 0.99503 0.95650 0.82923 1.46111 1.57538 1.23976 1.09421 1.21201 0.76423 0.80145 0.92200 1.90663 1.52840 1.55187 1.47903 1.21424 1.02140 0.97757 0.90893 0.86589 1.20414 0.99200 0.97545 0.94711 1.22066 1.01732 0.97067 0.97279 1.22276 1.00355 0.94418 1.00433 1.20520 1.02497 0.97410 0.92242 1.21399 0.99895 0.94968 0.97451 0.97601 0.96607 0.95023 0.94334 0.93340 0.92255 0.92624 0.93081 0.91827 0.92410 0.75240 0.91461 0.89274 0.86421 0.86275 0.89587 0.89613 0.91733 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.61 9.02 127.77 1.15 9.76 16 2 N -0.62 -30.82 2.93 -726.94 -2.13 -32.94 16 3 C -0.26 -14.32 9.68 84.04 0.81 -13.51 16 4 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 5 C -0.05 -2.97 5.06 84.86 0.43 -2.54 16 6 N -0.94 -54.93 10.67 21.65 0.23 -54.70 16 7 Si 0.97 44.84 29.58 68.60 2.03 46.87 16 8 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 9 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 C 0.15 5.86 5.71 86.38 0.49 6.36 16 12 C -0.13 -4.39 5.65 30.60 0.17 -4.22 16 13 C 0.13 3.83 5.67 86.38 0.49 4.32 16 14 N -0.72 -18.05 5.47 -463.07 -2.53 -20.58 16 15 C 0.51 13.52 7.13 87.66 0.62 14.14 16 16 O -0.59 -20.19 15.90 -3.03 -0.05 -20.23 16 17 C -0.10 -1.92 2.58 -11.40 -0.03 -1.95 16 18 H 0.12 1.81 8.13 -2.39 -0.02 1.79 16 19 C -0.08 -1.37 5.29 29.66 0.16 -1.21 16 20 C -0.16 -2.38 9.80 27.04 0.27 -2.12 16 21 C -0.16 -2.10 9.80 27.03 0.27 -1.83 16 22 C -0.09 -1.21 6.12 29.66 0.18 -1.02 16 23 C -0.10 -1.88 4.69 30.74 0.14 -1.73 16 24 H 0.01 0.30 7.40 -2.39 -0.02 0.29 16 25 H 0.02 0.82 7.21 -2.39 -0.02 0.81 16 26 H 0.03 1.31 7.83 -2.39 -0.02 1.29 16 27 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 29 H 0.06 2.07 7.86 -2.39 -0.02 2.05 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 8.58 8.22 -92.71 -0.76 7.82 16 35 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 36 H 0.09 1.30 7.95 -2.39 -0.02 1.28 16 37 H 0.12 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.12 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.06 1.35 7.91 -2.39 -0.02 1.33 16 42 H 0.05 1.20 8.12 -2.39 -0.02 1.18 16 Total: -1.00 -66.81 339.98 2.92 -63.89 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.21 Total: 13.25 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.16 Total: 4.46 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -4.43 Total: -108.22 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.81 2.92 -63.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233835978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.838 kcal (2) G-P(sol) polarization free energy of solvation -66.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds