Wall clock time and date at job start Mon Mar 30 2020 01:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36936 * 119.99778 * 2 1 4 4 H 1.07998 * 119.99828 * 153.64775 * 3 2 1 5 5 C 1.38815 * 119.99986 * 333.65043 * 3 2 1 6 6 N 1.31615 * 119.99993 * 331.73187 * 5 3 2 7 7 Si 1.86803 * 119.99837 * 151.73315 * 5 3 2 8 8 H 1.48500 * 109.47068 * 179.97438 * 7 5 3 9 9 H 1.48492 * 109.47126 * 300.00096 * 7 5 3 10 10 H 1.48509 * 109.46728 * 59.99864 * 7 5 3 11 11 C 1.46502 * 119.99942 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.46941 * 269.99583 * 11 2 1 13 13 C 1.53004 * 109.46985 * 179.97438 * 12 11 2 14 14 N 1.46498 * 109.46890 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99783 * 180.02562 * 14 13 12 16 16 O 1.21285 * 120.00108 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00124 * 180.02562 * 15 14 13 18 18 H 1.09005 * 109.64030 * 300.41514 * 17 15 14 19 19 C 1.53019 * 109.64391 * 61.05176 * 17 15 14 20 20 C 1.50069 * 110.15009 * 169.12158 * 19 17 15 21 21 C 1.29441 * 124.07117 * 342.87400 * 20 19 17 22 22 C 1.50070 * 124.08025 * 0.46028 * 21 20 19 23 23 C 1.53019 * 110.14308 * 342.87723 * 22 21 20 24 24 H 1.08994 * 109.47511 * 87.31272 * 1 2 3 25 25 H 1.09004 * 109.46680 * 207.30667 * 1 2 3 26 26 H 1.08997 * 109.47380 * 327.30652 * 1 2 3 27 27 H 0.96999 * 120.00449 * 354.44969 * 6 5 3 28 28 H 1.08996 * 109.47064 * 29.99564 * 11 2 1 29 29 H 1.08998 * 109.46879 * 150.00090 * 11 2 1 30 30 H 1.08996 * 109.47755 * 300.00435 * 12 11 2 31 31 H 1.09010 * 109.47221 * 60.00398 * 12 11 2 32 32 H 1.08996 * 109.47131 * 300.00048 * 13 12 11 33 33 H 1.08998 * 109.46769 * 60.00547 * 13 12 11 34 34 H 0.97005 * 120.00425 * 0.02562 * 14 13 12 35 35 H 1.08999 * 109.36225 * 289.33052 * 19 17 15 36 36 H 1.09000 * 109.36022 * 48.91800 * 19 17 15 37 37 H 1.07994 * 117.96334 * 162.84264 * 20 19 17 38 38 H 1.08008 * 117.95995 * 180.49043 * 21 20 19 39 39 H 1.08992 * 109.35684 * 222.66400 * 22 21 20 40 40 H 1.09005 * 109.24053 * 103.00847 * 22 21 20 41 41 H 1.08999 * 109.64041 * 289.74473 * 23 22 21 42 42 H 1.09006 * 109.64110 * 169.11957 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1455 1.2345 0.4152 5 6 1.5637 2.3256 -0.5336 6 7 0.6692 2.2181 -1.4930 7 14 2.0448 4.0119 0.1102 8 1 1.2822 5.0564 -0.6196 9 1 1.7357 4.0949 1.5602 10 1 3.4996 4.2249 -0.0988 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 6 3.2170 -3.0363 1.4411 14 7 3.4607 -3.4601 2.8222 15 6 4.1232 -4.6078 3.0679 16 8 4.5171 -5.2900 2.1458 17 6 4.3734 -5.0440 4.4886 18 1 4.9557 -4.2832 5.0083 19 6 3.0377 -5.2542 5.2050 20 6 3.2597 -5.9369 6.5228 21 6 4.3443 -6.5690 6.8384 22 6 5.5351 -6.6991 5.9345 23 6 5.1404 -6.3724 4.4926 24 1 -0.3634 0.0482 -1.0264 25 1 -0.3633 -0.9132 0.4715 26 1 -0.3634 0.8648 0.5551 27 1 0.4781 1.3507 -1.8830 28 1 1.6084 -2.0281 -0.5147 29 1 3.1499 -1.1381 -0.5143 30 1 3.0416 -0.9516 1.9559 31 1 1.5001 -1.8416 1.9556 32 1 2.6276 -3.7955 0.9272 33 1 4.1694 -2.9062 0.9273 34 1 3.1453 -2.9146 3.5597 35 1 2.5624 -4.2880 5.3742 36 1 2.3876 -5.8705 4.5839 37 1 2.4654 -5.8980 7.2534 38 1 4.3953 -7.0320 7.8129 39 1 5.9155 -7.7193 5.9827 40 1 6.3119 -6.0079 6.2619 41 1 4.5035 -7.1644 4.0987 42 1 6.0368 -6.2798 3.8793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233835979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:41 Heat of formation + Delta-G solvation = -25.326861 kcal Electronic energy + Delta-G solvation = -19837.223667 eV Core-core repulsion = 16817.140394 eV Total energy + Delta-G solvation = -3020.083273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.25651 -37.91274 -36.40545 -34.90543 -32.37307 -31.45835 -31.04057 -29.68094 -26.26787 -25.30251 -23.96494 -22.98783 -21.77927 -20.68477 -19.88650 -18.22784 -17.36599 -17.33199 -16.14749 -15.71607 -15.37186 -14.69885 -14.26185 -14.06855 -13.97408 -13.66011 -13.54539 -13.31986 -13.17672 -12.83466 -12.50423 -12.49151 -11.80143 -11.53163 -11.27527 -11.08884 -11.05992 -10.81298 -10.76560 -10.64296 -10.61771 -10.14168 -10.01795 -9.72600 -9.43859 -9.32329 -8.99390 -8.34366 -6.91618 -6.04680 -3.23722 1.96673 2.62208 3.20326 3.49654 3.52648 3.70991 4.32241 4.37363 4.57761 4.60221 4.90592 4.92872 5.00007 5.12042 5.14481 5.23777 5.34302 5.39976 5.40629 5.55011 5.61296 5.63898 5.73037 5.81213 5.92529 6.02223 6.03935 6.12587 6.32021 6.33059 6.45860 6.53725 6.61363 6.69125 6.77615 6.99112 7.08585 7.52367 8.00822 8.22587 8.58325 9.13132 9.86073 10.26020 11.20328 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033665 B = 0.003034 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.519086 B = 9227.961380 C = 9417.577096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.605 5.605 3 C -0.360 4.360 4 H 0.056 0.944 5 C -0.021 4.021 6 N -0.911 5.911 7 Si 1.062 2.938 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.293 1.293 11 C 0.155 3.845 12 C -0.148 4.148 13 C 0.120 3.880 14 N -0.726 5.726 15 C 0.514 3.486 16 O -0.544 6.544 17 C -0.108 4.108 18 H 0.098 0.902 19 C -0.082 4.082 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.093 4.093 23 C -0.099 4.099 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.043 0.957 27 H 0.270 0.730 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.763 -16.028 16.167 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.328 5.328 3 C -0.489 4.489 4 H 0.074 0.926 5 C -0.224 4.224 6 N -0.550 5.550 7 Si 0.891 3.109 8 H -0.211 1.211 9 H -0.221 1.221 10 H -0.220 1.220 11 C 0.027 3.973 12 C -0.189 4.189 13 C -0.004 4.004 14 N -0.377 5.377 15 C 0.299 3.701 16 O -0.421 6.421 17 C -0.130 4.130 18 H 0.116 0.884 19 C -0.119 4.119 20 C -0.172 4.172 21 C -0.174 4.174 22 C -0.130 4.130 23 C -0.137 4.137 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.696 -14.855 15.335 22.097 hybrid contribution 0.135 -1.308 0.637 1.461 sum 5.831 -16.163 15.972 23.460 Atomic orbital electron populations 1.20965 0.84108 0.97737 0.98305 1.43921 1.00934 1.01439 1.86534 1.19878 1.02564 0.87658 1.38815 0.92611 1.25818 0.99034 1.02410 0.95155 1.70785 1.36325 1.27628 1.20278 0.83581 0.75472 0.76072 0.75739 1.21131 1.22116 1.21963 1.20614 0.96374 0.88226 0.92048 1.22461 0.99449 0.94350 1.02594 1.21438 1.00361 0.96803 0.81807 1.46173 1.57946 1.23885 1.09702 1.20608 0.77533 0.80745 0.91169 1.90693 1.50995 1.54032 1.46362 1.21414 0.98578 0.99887 0.93086 0.88363 1.20415 0.95905 1.01125 0.94488 1.21987 0.98317 0.99382 0.97517 1.22100 0.95570 0.99912 0.99803 1.20512 0.96479 1.02084 0.93941 1.21419 1.00698 0.95557 0.96049 0.96732 0.96509 0.93849 0.91876 0.94703 0.93127 0.91469 0.92347 0.91886 0.91672 0.76624 0.90371 0.90272 0.87579 0.87891 0.90686 0.90734 0.91116 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.19 9.06 59.85 0.54 3.74 16 2 N -0.60 -15.15 2.77 -181.12 -0.50 -15.65 16 3 C -0.36 -10.06 9.45 -15.06 -0.14 -10.20 16 4 H 0.06 1.56 7.97 -52.49 -0.42 1.14 16 5 C -0.02 -0.60 4.74 -17.43 -0.08 -0.68 16 6 N -0.91 -27.52 12.88 55.49 0.71 -26.81 16 7 Si 1.06 25.23 30.00 -169.99 -5.10 20.13 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 C 0.16 3.17 5.66 -4.04 -0.02 3.14 16 12 C -0.15 -2.45 5.65 -26.73 -0.15 -2.60 16 13 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 14 N -0.73 -8.98 5.47 -60.29 -0.33 -9.31 16 15 C 0.51 6.71 7.13 -10.98 -0.08 6.63 16 16 O -0.54 -9.23 15.91 5.55 0.09 -9.14 16 17 C -0.11 -1.04 2.58 -91.56 -0.24 -1.28 16 18 H 0.10 0.83 8.13 -51.93 -0.42 0.41 16 19 C -0.08 -0.68 5.29 -28.18 -0.15 -0.83 16 20 C -0.15 -1.18 9.80 -35.90 -0.35 -1.53 16 21 C -0.16 -1.15 9.80 -35.90 -0.35 -1.50 16 22 C -0.09 -0.69 6.12 -28.18 -0.17 -0.86 16 23 C -0.10 -0.95 4.69 -26.52 -0.12 -1.07 16 24 H 0.01 0.37 6.52 -51.93 -0.34 0.03 16 25 H 0.02 0.33 8.05 -51.93 -0.42 -0.08 16 26 H 0.04 1.10 7.70 -51.93 -0.40 0.70 16 27 H 0.27 8.22 6.24 -40.82 -0.25 7.96 16 28 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 29 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.40 4.03 8.22 -40.82 -0.34 3.69 16 35 H 0.08 0.56 7.95 -51.93 -0.41 0.14 16 36 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.10 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 42 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -32.53 339.98 -8.62 -41.14 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.27 Total: -0.17 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.34 Total: -5.31 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.12 Total: -51.77 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.10 Total: 20.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.53 -8.62 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233835979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.818 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds