Wall clock time and date at job start Mon Mar 30 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36936 * 119.99778 * 2 1 4 4 H 1.07998 * 119.99828 * 153.64775 * 3 2 1 5 5 C 1.38815 * 119.99986 * 333.65043 * 3 2 1 6 6 N 1.31615 * 119.99993 * 331.73187 * 5 3 2 7 7 Si 1.86803 * 119.99837 * 151.73315 * 5 3 2 8 8 H 1.48500 * 109.47068 * 179.97438 * 7 5 3 9 9 H 1.48492 * 109.47126 * 300.00096 * 7 5 3 10 10 H 1.48509 * 109.46728 * 59.99864 * 7 5 3 11 11 C 1.46502 * 119.99942 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.46941 * 269.99583 * 11 2 1 13 13 C 1.53004 * 109.46985 * 179.97438 * 12 11 2 14 14 N 1.46498 * 109.46890 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99783 * 180.02562 * 14 13 12 16 16 O 1.21285 * 120.00108 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00124 * 180.02562 * 15 14 13 18 18 H 1.09005 * 109.64030 * 300.41514 * 17 15 14 19 19 C 1.53019 * 109.64391 * 61.05176 * 17 15 14 20 20 C 1.50069 * 110.15009 * 169.12158 * 19 17 15 21 21 C 1.29441 * 124.07117 * 342.87400 * 20 19 17 22 22 C 1.50070 * 124.08025 * 0.46028 * 21 20 19 23 23 C 1.53019 * 110.14308 * 342.87723 * 22 21 20 24 24 H 1.08994 * 109.47511 * 87.31272 * 1 2 3 25 25 H 1.09004 * 109.46680 * 207.30667 * 1 2 3 26 26 H 1.08997 * 109.47380 * 327.30652 * 1 2 3 27 27 H 0.96999 * 120.00449 * 354.44969 * 6 5 3 28 28 H 1.08996 * 109.47064 * 29.99564 * 11 2 1 29 29 H 1.08998 * 109.46879 * 150.00090 * 11 2 1 30 30 H 1.08996 * 109.47755 * 300.00435 * 12 11 2 31 31 H 1.09010 * 109.47221 * 60.00398 * 12 11 2 32 32 H 1.08996 * 109.47131 * 300.00048 * 13 12 11 33 33 H 1.08998 * 109.46769 * 60.00547 * 13 12 11 34 34 H 0.97005 * 120.00425 * 0.02562 * 14 13 12 35 35 H 1.08999 * 109.36225 * 289.33052 * 19 17 15 36 36 H 1.09000 * 109.36022 * 48.91800 * 19 17 15 37 37 H 1.07994 * 117.96334 * 162.84264 * 20 19 17 38 38 H 1.08008 * 117.95995 * 180.49043 * 21 20 19 39 39 H 1.08992 * 109.35684 * 222.66400 * 22 21 20 40 40 H 1.09005 * 109.24053 * 103.00847 * 22 21 20 41 41 H 1.08999 * 109.64041 * 289.74473 * 23 22 21 42 42 H 1.09006 * 109.64110 * 169.11957 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1455 1.2345 0.4152 5 6 1.5637 2.3256 -0.5336 6 7 0.6692 2.2181 -1.4930 7 14 2.0448 4.0119 0.1102 8 1 1.2822 5.0564 -0.6196 9 1 1.7357 4.0949 1.5602 10 1 3.4996 4.2249 -0.0988 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 6 3.2170 -3.0363 1.4411 14 7 3.4607 -3.4601 2.8222 15 6 4.1232 -4.6078 3.0679 16 8 4.5171 -5.2900 2.1458 17 6 4.3734 -5.0440 4.4886 18 1 4.9557 -4.2832 5.0083 19 6 3.0377 -5.2542 5.2050 20 6 3.2597 -5.9369 6.5228 21 6 4.3443 -6.5690 6.8384 22 6 5.5351 -6.6991 5.9345 23 6 5.1404 -6.3724 4.4926 24 1 -0.3634 0.0482 -1.0264 25 1 -0.3633 -0.9132 0.4715 26 1 -0.3634 0.8648 0.5551 27 1 0.4781 1.3507 -1.8830 28 1 1.6084 -2.0281 -0.5147 29 1 3.1499 -1.1381 -0.5143 30 1 3.0416 -0.9516 1.9559 31 1 1.5001 -1.8416 1.9556 32 1 2.6276 -3.7955 0.9272 33 1 4.1694 -2.9062 0.9273 34 1 3.1453 -2.9146 3.5597 35 1 2.5624 -4.2880 5.3742 36 1 2.3876 -5.8705 4.5839 37 1 2.4654 -5.8980 7.2534 38 1 4.3953 -7.0320 7.8129 39 1 5.9155 -7.7193 5.9827 40 1 6.3119 -6.0079 6.2619 41 1 4.5035 -7.1644 4.0987 42 1 6.0368 -6.2798 3.8793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233835979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:40 Heat of formation + Delta-G solvation = -45.031402 kcal Electronic energy + Delta-G solvation = -19838.078120 eV Core-core repulsion = 16817.140394 eV Total energy + Delta-G solvation = -3020.937726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23282 -38.75440 -38.11250 -36.31971 -33.93868 -32.50917 -31.78015 -31.15152 -28.12368 -26.93122 -24.87705 -23.96772 -23.12193 -22.22123 -21.08865 -19.38047 -18.87612 -18.26541 -17.21784 -16.81582 -16.52731 -16.12373 -15.82338 -15.40048 -15.29384 -14.90332 -14.74036 -14.57804 -14.21183 -13.97753 -13.46789 -13.31701 -13.15503 -12.99268 -12.84612 -12.71995 -12.48489 -12.39843 -12.00330 -11.89381 -11.75871 -11.72546 -11.42887 -11.33582 -10.78231 -10.43912 -10.13402 -9.87533 -8.99163 -8.23367 -5.41988 1.41913 1.58807 1.59147 1.66226 1.85404 2.16277 2.66939 3.20016 3.51509 3.55656 3.70598 3.84490 4.02762 4.13856 4.24914 4.28350 4.37668 4.40551 4.46243 4.54743 4.61179 4.62065 4.71595 4.72893 4.77826 4.90468 4.94703 5.04091 5.04998 5.12083 5.20199 5.24884 5.31787 5.37492 5.43406 5.77270 5.83827 6.06121 6.38745 6.52213 7.05745 7.20579 7.77918 8.17253 8.98184 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033665 B = 0.003034 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.519086 B = 9227.961380 C = 9417.577096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.143 3.857 2 N -0.623 5.623 3 C -0.363 4.363 4 H 0.052 0.948 5 C -0.075 4.075 6 N -0.940 5.940 7 Si 1.113 2.887 8 H -0.293 1.293 9 H -0.278 1.278 10 H -0.276 1.276 11 C 0.150 3.850 12 C -0.124 4.124 13 C 0.131 3.869 14 N -0.717 5.717 15 C 0.512 3.488 16 O -0.587 6.587 17 C -0.101 4.101 18 H 0.116 0.884 19 C -0.080 4.080 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.090 4.090 23 C -0.100 4.100 24 H -0.004 1.004 25 H 0.054 0.946 26 H 0.021 0.979 27 H 0.255 0.745 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.414 0.586 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.193 -16.374 18.652 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.347 5.347 3 C -0.493 4.493 4 H 0.070 0.930 5 C -0.272 4.272 6 N -0.581 5.581 7 Si 0.937 3.063 8 H -0.219 1.219 9 H -0.204 1.204 10 H -0.202 1.202 11 C 0.023 3.977 12 C -0.165 4.165 13 C 0.007 3.993 14 N -0.369 5.369 15 C 0.300 3.700 16 O -0.467 6.467 17 C -0.122 4.122 18 H 0.134 0.866 19 C -0.117 4.117 20 C -0.180 4.180 21 C -0.176 4.176 22 C -0.127 4.127 23 C -0.138 4.138 24 H 0.014 0.986 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.250 0.750 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.136 -15.229 17.865 24.264 hybrid contribution 0.032 -1.304 -0.165 1.315 sum 6.168 -16.533 17.700 24.993 Atomic orbital electron populations 1.20837 0.83612 0.98561 0.97196 1.44179 1.01570 1.02199 1.86775 1.20126 1.02614 0.88998 1.37566 0.93000 1.27194 0.98985 1.06067 0.94938 1.70914 1.38356 1.26740 1.22136 0.82899 0.75913 0.71749 0.75748 1.21950 1.20390 1.20195 1.20782 0.95484 0.86853 0.94550 1.22089 1.00021 0.94807 0.99536 1.21139 0.99418 0.95670 0.83123 1.46034 1.57670 1.23976 1.09176 1.21242 0.76427 0.80091 0.92241 1.90676 1.52742 1.55297 1.48000 1.21427 0.99774 1.00213 0.90772 0.86588 1.20417 0.94769 1.01927 0.94611 1.22077 0.98989 0.99616 0.97334 1.22268 0.95311 0.99639 1.00408 1.20513 0.96956 1.02974 0.92264 1.21401 0.99813 0.95161 0.97436 0.98640 0.92756 0.95991 0.93437 0.93343 0.94435 0.92348 0.91318 0.92060 0.92824 0.74968 0.88879 0.91331 0.86222 0.86324 0.89716 0.89705 0.92600 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.78 9.06 127.77 1.16 7.94 16 2 N -0.62 -31.00 2.77 -726.94 -2.01 -33.01 16 3 C -0.36 -20.24 9.45 84.03 0.79 -19.45 16 4 H 0.05 2.88 7.97 -2.91 -0.02 2.86 16 5 C -0.07 -4.26 4.74 84.86 0.40 -3.86 16 6 N -0.94 -57.67 12.88 21.65 0.28 -57.39 16 7 Si 1.11 50.64 30.00 68.60 2.06 52.69 16 8 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 11 C 0.15 5.99 5.66 86.38 0.49 6.48 16 12 C -0.12 -3.91 5.65 30.59 0.17 -3.74 16 13 C 0.13 3.67 5.67 86.38 0.49 4.16 16 14 N -0.72 -16.52 5.47 -463.06 -2.53 -19.05 16 15 C 0.51 12.85 7.13 87.66 0.62 13.48 16 16 O -0.59 -19.94 15.91 -3.05 -0.05 -19.99 16 17 C -0.10 -1.76 2.58 -11.40 -0.03 -1.79 16 18 H 0.12 1.65 8.13 -2.38 -0.02 1.64 16 19 C -0.08 -1.15 5.29 29.66 0.16 -0.99 16 20 C -0.16 -2.05 9.80 27.04 0.27 -1.78 16 21 C -0.16 -1.91 9.80 27.04 0.27 -1.65 16 22 C -0.09 -1.14 6.12 29.66 0.18 -0.96 16 23 C -0.10 -1.82 4.69 30.73 0.14 -1.67 16 24 H 0.00 -0.23 6.52 -2.39 -0.02 -0.24 16 25 H 0.05 2.11 8.05 -2.38 -0.02 2.09 16 26 H 0.02 1.10 7.70 -2.39 -0.02 1.08 16 27 H 0.26 15.96 6.24 -92.71 -0.58 15.38 16 28 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 29 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.41 7.28 8.22 -92.70 -0.76 6.52 16 35 H 0.09 1.05 7.95 -2.39 -0.02 1.03 16 36 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.12 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.12 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 42 H 0.06 1.28 7.91 -2.38 -0.02 1.26 16 Total: -1.00 -70.31 339.98 3.26 -67.04 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.41 Total: 13.55 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.11 Total: -3.85 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -4.27 Total: -109.46 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.06 Total: 52.69 kcal Total: -70.31 3.26 -67.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233835979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.013 kcal (2) G-P(sol) polarization free energy of solvation -70.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds