Wall clock time and date at job start Mon Mar 30 2020 01:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00101 * 2 1 4 4 C 1.46903 * 111.00100 * 123.95713 * 2 1 3 5 5 H 1.09000 * 109.01742 * 297.06449 * 4 2 1 6 6 C 1.52525 * 108.97741 * 178.16845 * 4 2 1 7 7 C 1.53872 * 111.99517 * 293.27203 * 6 4 2 8 8 C 1.51445 * 107.02285 * 303.44798 * 7 6 4 9 9 H 1.08994 * 109.86929 * 304.99211 * 8 7 6 10 10 C 1.52329 * 117.45821 * 178.45752 * 8 7 6 11 11 N 1.48245 * 105.85908 * 214.19405 * 10 8 7 12 12 C 1.34775 * 125.77892 * 183.22708 * 11 10 8 13 13 O 1.21690 * 119.99955 * 179.97438 * 12 11 10 14 14 C 1.46380 * 120.00196 * 359.96909 * 12 11 10 15 15 H 1.07999 * 119.99945 * 0.02562 * 14 12 11 16 16 C 1.40049 * 119.99935 * 180.02562 * 14 12 11 17 17 N 1.30673 * 120.00204 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99805 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47316 * 60.00036 * 18 16 14 20 20 H 1.48509 * 109.46977 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47353 * 299.99619 * 18 16 14 22 22 C 1.48658 * 108.43598 * 3.18509 * 11 10 8 23 23 C 1.53063 * 103.44458 * 24.37905 * 22 11 10 24 24 H 1.09007 * 110.56031 * 75.66370 * 23 22 11 25 25 C 1.51618 * 116.67032 * 204.12731 * 23 22 11 26 26 H 1.09003 * 109.47276 * 296.04409 * 1 2 3 27 27 H 1.09002 * 109.47240 * 56.04925 * 1 2 3 28 28 H 1.09000 * 109.47418 * 176.05031 * 1 2 3 29 29 H 1.09006 * 109.47001 * 190.82167 * 3 2 1 30 30 H 1.08999 * 109.46906 * 310.81900 * 3 2 1 31 31 H 1.09001 * 109.47081 * 70.82765 * 3 2 1 32 32 H 1.09000 * 109.04474 * 54.06340 * 6 4 2 33 33 H 1.08992 * 109.04839 * 172.95269 * 6 4 2 34 34 H 1.08998 * 110.63740 * 183.68463 * 7 6 4 35 35 H 1.09000 * 109.25773 * 62.44304 * 7 6 4 36 36 H 1.08998 * 110.17274 * 333.29221 * 10 8 7 37 37 H 1.09002 * 110.16920 * 95.09732 * 10 8 7 38 38 H 0.96998 * 120.00453 * 180.02562 * 17 16 14 39 39 H 1.09006 * 110.62188 * 142.86617 * 22 11 10 40 40 H 1.08998 * 110.62521 * 265.88871 * 22 11 10 41 41 H 1.08996 * 109.94442 * 295.61643 * 25 23 22 42 42 H 1.09000 * 109.94267 * 56.76745 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 1.6850 -0.2840 2.0646 6 6 3.5190 -0.7744 1.0674 7 6 4.0356 -1.5627 -0.1490 8 6 3.4579 -2.9591 -0.0501 9 1 3.7111 -3.3973 0.9152 10 6 3.7932 -3.9386 -1.1675 11 7 2.5916 -4.7909 -1.3332 12 6 2.4765 -5.8350 -2.1776 13 8 1.4367 -6.4652 -2.2278 14 6 3.6022 -6.2110 -3.0344 15 1 4.5251 -5.6520 -2.9897 16 6 3.4823 -7.2956 -3.9123 17 7 2.3654 -7.9717 -3.9668 18 14 4.9190 -7.7758 -5.0052 19 1 6.0886 -8.1261 -4.1598 20 1 4.5398 -8.9478 -5.8348 21 1 5.2710 -6.6359 -5.8894 22 6 1.5357 -4.2995 -0.4094 23 6 1.9128 -2.8330 -0.1858 24 1 1.6504 -2.2331 -1.0572 25 6 1.4161 -2.1902 1.0944 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0680 1.3488 -0.1930 30 1 1.4985 1.9513 -0.7777 31 1 1.8105 1.8315 0.9707 32 1 3.8778 0.2530 1.0041 33 1 3.9144 -1.2326 1.9738 34 1 5.1246 -1.6095 -0.1421 35 1 3.6890 -1.0809 -1.0632 36 1 4.0011 -3.3984 -2.0911 37 1 4.6515 -4.5492 -0.8871 38 1 2.2824 -8.7232 -4.5745 39 1 0.5527 -4.3766 -0.8742 40 1 1.5613 -4.8503 0.5308 41 1 0.3269 -2.1486 1.0913 42 1 1.7635 -2.7605 1.9559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262496557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:39 Heat of formation + Delta-G solvation = -29.368594 kcal Electronic energy + Delta-G solvation = -21348.173338 eV Core-core repulsion = 18327.914803 eV Total energy + Delta-G solvation = -3020.258535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16068 -37.65656 -35.89611 -33.38903 -32.36905 -31.45381 -29.43786 -27.97216 -26.67054 -25.98011 -24.08540 -23.20620 -20.88560 -20.37837 -19.06610 -19.02605 -16.49150 -15.82970 -15.52666 -15.32784 -15.19969 -14.75204 -14.18543 -13.78238 -13.56264 -13.39096 -12.82759 -12.52090 -12.51732 -12.29167 -12.04028 -11.82966 -11.64045 -11.57727 -11.46782 -11.12231 -11.02653 -10.94201 -10.82967 -10.56613 -10.34208 -10.17051 -10.12379 -9.92862 -9.46081 -8.78831 -8.33273 -7.55147 -7.07127 -6.12978 -4.57053 3.19795 3.24069 3.26286 3.85814 4.13597 4.58423 4.62596 4.64805 4.78692 4.94374 5.07924 5.18628 5.25563 5.32276 5.38115 5.47627 5.54139 5.58183 5.66166 5.75076 5.79643 5.86666 5.90733 5.93242 5.99181 6.06292 6.17143 6.22375 6.23866 6.36953 6.48615 6.52913 6.67193 6.86991 6.95852 7.00970 7.03011 7.44178 7.50182 8.18492 8.50353 9.08478 9.60206 10.65396 10.84931 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032086 B = 0.004689 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.454784 B = 5970.598461 C = 6296.843880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.023 3.977 4 C 0.090 3.910 5 H 0.034 0.966 6 C -0.110 4.110 7 C -0.095 4.095 8 C -0.106 4.106 9 H 0.068 0.932 10 C 0.133 3.867 11 N -0.647 5.647 12 C 0.572 3.428 13 O -0.579 6.579 14 C -0.538 4.538 15 H 0.068 0.932 16 C 0.087 3.913 17 N -0.770 5.770 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.268 1.268 22 C 0.122 3.878 23 C -0.097 4.097 24 H 0.094 0.906 25 C -0.100 4.100 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.268 0.732 39 H 0.061 0.939 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 16.968 9.684 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.125 4.125 4 C -0.019 4.019 5 H 0.052 0.948 6 C -0.148 4.148 7 C -0.133 4.133 8 C -0.125 4.125 9 H 0.086 0.914 10 C 0.008 3.992 11 N -0.388 5.388 12 C 0.378 3.622 13 O -0.462 6.462 14 C -0.575 4.575 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.399 5.399 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.002 4.002 23 C -0.116 4.116 24 H 0.112 0.888 25 C -0.138 4.138 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.167 16.136 9.075 18.550 hybrid contribution 0.494 0.243 0.289 0.621 sum 1.661 16.379 9.363 18.939 Atomic orbital electron populations 1.22469 0.87595 1.02848 0.99918 1.61968 1.07628 1.13078 1.43424 1.22424 1.01321 0.89036 0.99749 1.21711 0.95077 0.94301 0.90762 0.94764 1.21623 0.93854 1.00335 0.99007 1.21175 0.99085 0.94402 0.98597 1.21867 0.96417 0.95023 0.99195 0.91379 1.21240 0.89760 0.91568 0.96588 1.49289 1.12487 1.33855 1.43138 1.18012 0.88825 0.76988 0.78339 1.90600 1.31603 1.53610 1.70388 1.20867 0.99169 1.15311 1.22177 0.91381 1.25724 0.96015 0.95186 0.96305 1.70018 1.24538 1.14839 1.30494 0.86444 0.81862 0.78407 0.80096 1.19292 1.20571 1.19258 1.21563 0.93448 0.91774 0.93384 1.22003 0.95284 0.96066 0.98227 0.88811 1.21450 1.00176 0.94125 0.98063 0.96133 0.91606 0.90523 0.91020 0.91712 0.96100 0.92024 0.92040 0.92193 0.90819 0.93033 0.92932 0.92108 0.92059 0.94062 0.91605 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.10 60.06 0.55 0.75 16 2 N -0.54 -5.87 3.74 -242.96 -0.91 -6.78 16 3 C 0.02 0.21 8.99 60.06 0.54 0.75 16 4 C 0.09 0.96 2.19 -67.53 -0.15 0.82 16 5 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 6 C -0.11 -1.13 5.03 -26.52 -0.13 -1.27 16 7 C -0.09 -1.15 5.61 -27.06 -0.15 -1.31 16 8 C -0.11 -1.59 2.28 -90.35 -0.21 -1.80 16 9 H 0.07 1.00 7.93 -51.93 -0.41 0.58 16 10 C 0.13 2.57 5.80 -3.42 -0.02 2.55 16 11 N -0.65 -15.64 3.38 -172.52 -0.58 -16.22 16 12 C 0.57 17.16 7.79 -12.99 -0.10 17.06 16 13 O -0.58 -19.64 15.31 5.20 0.08 -19.56 16 14 C -0.54 -15.76 9.07 -35.63 -0.32 -16.08 16 15 H 0.07 1.84 7.16 -52.49 -0.38 1.46 16 16 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 17 N -0.77 -23.69 11.83 55.55 0.66 -23.03 16 18 Si 0.91 20.62 29.56 -169.99 -5.02 15.60 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 C 0.12 2.47 6.56 -2.82 -0.02 2.45 16 23 C -0.10 -1.50 2.40 -89.89 -0.22 -1.71 16 24 H 0.09 1.59 7.37 -51.93 -0.38 1.21 16 25 C -0.10 -1.22 4.81 -27.01 -0.13 -1.35 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 28 H 0.08 0.84 6.12 -51.93 -0.32 0.52 16 29 H 0.07 0.63 6.49 -51.93 -0.34 0.29 16 30 H 0.06 0.54 8.00 -51.93 -0.42 0.13 16 31 H 0.02 0.17 8.11 -51.93 -0.42 -0.25 16 32 H 0.06 0.56 6.11 -51.93 -0.32 0.25 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 36 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.27 7.48 8.29 -40.82 -0.34 7.14 16 39 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.77 6.15 -51.93 -0.32 0.45 16 42 H 0.07 0.80 7.99 -51.93 -0.41 0.38 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -34.72 320.98 -8.45 -43.17 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.05 Total: -1.27 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.46 Total: 3.26 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.84 Total: -46.03 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.08 Total: -19.56 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.72 -8.45 -43.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262496557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.799 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds