Wall clock time and date at job start Mon Mar 30 2020 01:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00101 * 2 1 4 4 C 1.46903 * 111.00100 * 123.95713 * 2 1 3 5 5 H 1.09000 * 109.01742 * 297.06449 * 4 2 1 6 6 C 1.52525 * 108.97741 * 178.16845 * 4 2 1 7 7 C 1.53872 * 111.99517 * 293.27203 * 6 4 2 8 8 C 1.51445 * 107.02285 * 303.44798 * 7 6 4 9 9 H 1.08994 * 109.86929 * 304.99211 * 8 7 6 10 10 C 1.52329 * 117.45821 * 178.45752 * 8 7 6 11 11 N 1.48245 * 105.85908 * 214.19405 * 10 8 7 12 12 C 1.34775 * 125.77892 * 183.22708 * 11 10 8 13 13 O 1.21690 * 119.99955 * 179.97438 * 12 11 10 14 14 C 1.46380 * 120.00196 * 359.96909 * 12 11 10 15 15 H 1.07999 * 119.99945 * 0.02562 * 14 12 11 16 16 C 1.40049 * 119.99935 * 180.02562 * 14 12 11 17 17 N 1.30673 * 120.00204 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99805 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47316 * 60.00036 * 18 16 14 20 20 H 1.48509 * 109.46977 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47353 * 299.99619 * 18 16 14 22 22 C 1.48658 * 108.43598 * 3.18509 * 11 10 8 23 23 C 1.53063 * 103.44458 * 24.37905 * 22 11 10 24 24 H 1.09007 * 110.56031 * 75.66370 * 23 22 11 25 25 C 1.51618 * 116.67032 * 204.12731 * 23 22 11 26 26 H 1.09003 * 109.47276 * 296.04409 * 1 2 3 27 27 H 1.09002 * 109.47240 * 56.04925 * 1 2 3 28 28 H 1.09000 * 109.47418 * 176.05031 * 1 2 3 29 29 H 1.09006 * 109.47001 * 190.82167 * 3 2 1 30 30 H 1.08999 * 109.46906 * 310.81900 * 3 2 1 31 31 H 1.09001 * 109.47081 * 70.82765 * 3 2 1 32 32 H 1.09000 * 109.04474 * 54.06340 * 6 4 2 33 33 H 1.08992 * 109.04839 * 172.95269 * 6 4 2 34 34 H 1.08998 * 110.63740 * 183.68463 * 7 6 4 35 35 H 1.09000 * 109.25773 * 62.44304 * 7 6 4 36 36 H 1.08998 * 110.17274 * 333.29221 * 10 8 7 37 37 H 1.09002 * 110.16920 * 95.09732 * 10 8 7 38 38 H 0.96998 * 120.00453 * 180.02562 * 17 16 14 39 39 H 1.09006 * 110.62188 * 142.86617 * 22 11 10 40 40 H 1.08998 * 110.62521 * 265.88871 * 22 11 10 41 41 H 1.08996 * 109.94442 * 295.61643 * 25 23 22 42 42 H 1.09000 * 109.94267 * 56.76745 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 1 1.6850 -0.2840 2.0646 6 6 3.5190 -0.7744 1.0674 7 6 4.0356 -1.5627 -0.1490 8 6 3.4579 -2.9591 -0.0501 9 1 3.7111 -3.3973 0.9152 10 6 3.7932 -3.9386 -1.1675 11 7 2.5916 -4.7909 -1.3332 12 6 2.4765 -5.8350 -2.1776 13 8 1.4367 -6.4652 -2.2278 14 6 3.6022 -6.2110 -3.0344 15 1 4.5251 -5.6520 -2.9897 16 6 3.4823 -7.2956 -3.9123 17 7 2.3654 -7.9717 -3.9668 18 14 4.9190 -7.7758 -5.0052 19 1 6.0886 -8.1261 -4.1598 20 1 4.5398 -8.9478 -5.8348 21 1 5.2710 -6.6359 -5.8894 22 6 1.5357 -4.2995 -0.4094 23 6 1.9128 -2.8330 -0.1858 24 1 1.6504 -2.2331 -1.0572 25 6 1.4161 -2.1902 1.0944 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0680 1.3488 -0.1930 30 1 1.4985 1.9513 -0.7777 31 1 1.8105 1.8315 0.9707 32 1 3.8778 0.2530 1.0041 33 1 3.9144 -1.2326 1.9738 34 1 5.1246 -1.6095 -0.1421 35 1 3.6890 -1.0809 -1.0632 36 1 4.0011 -3.3984 -2.0911 37 1 4.6515 -4.5492 -0.8871 38 1 2.2824 -8.7232 -4.5745 39 1 0.5527 -4.3766 -0.8742 40 1 1.5613 -4.8503 0.5308 41 1 0.3269 -2.1486 1.0913 42 1 1.7635 -2.7605 1.9559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262496557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:39 Heat of formation + Delta-G solvation = -53.358510 kcal Electronic energy + Delta-G solvation = -21349.213619 eV Core-core repulsion = 18327.914803 eV Total energy + Delta-G solvation = -3021.298816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37030 -39.25659 -37.60026 -34.85892 -34.49331 -32.63594 -30.83675 -29.26351 -28.05435 -27.59743 -25.41519 -24.24531 -22.23715 -21.60594 -21.03624 -20.02468 -18.52801 -17.56116 -16.78986 -16.40425 -16.36183 -16.11506 -15.80812 -15.30264 -14.84702 -14.69931 -14.41348 -13.88875 -13.61806 -13.35967 -13.27209 -13.09495 -13.07122 -12.95054 -12.72027 -12.70414 -12.62269 -12.36110 -12.16780 -12.04142 -11.93239 -11.69289 -11.43069 -11.08407 -10.93304 -10.61245 -9.88621 -9.09899 -9.09465 -8.30566 -6.86691 1.38026 1.42441 1.54173 2.23056 2.43952 2.82403 3.09216 3.47408 3.57525 3.76942 3.92317 4.14925 4.20154 4.34728 4.38367 4.40835 4.55809 4.60903 4.64436 4.71790 4.72708 4.78055 4.79928 4.86292 4.93681 4.95543 5.02844 5.04642 5.16928 5.18934 5.27673 5.30042 5.36207 5.41456 5.49673 5.61740 5.70908 6.01603 6.22424 6.27219 6.40747 6.84735 7.47946 8.44475 8.65910 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032086 B = 0.004689 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.454784 B = 5970.598461 C = 6296.843880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.556 5.556 3 C 0.024 3.976 4 C 0.093 3.907 5 H 0.051 0.949 6 C -0.106 4.106 7 C -0.088 4.088 8 C -0.093 4.093 9 H 0.080 0.920 10 C 0.127 3.873 11 N -0.657 5.657 12 C 0.550 3.450 13 O -0.636 6.636 14 C -0.566 4.566 15 H 0.085 0.915 16 C 0.027 3.973 17 N -0.823 5.823 18 Si 1.000 3.000 19 H -0.253 1.253 20 H -0.272 1.272 21 H -0.253 1.253 22 C 0.116 3.884 23 C -0.078 4.078 24 H 0.078 0.922 25 C -0.096 4.096 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.275 0.725 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 19.047 10.568 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.281 5.281 3 C -0.124 4.124 4 C -0.015 4.015 5 H 0.069 0.931 6 C -0.144 4.144 7 C -0.125 4.125 8 C -0.111 4.111 9 H 0.098 0.902 10 C 0.005 3.995 11 N -0.395 5.395 12 C 0.356 3.644 13 O -0.524 6.524 14 C -0.602 4.602 15 H 0.103 0.897 16 C -0.187 4.187 17 N -0.453 5.453 18 Si 0.818 3.182 19 H -0.176 1.176 20 H -0.196 1.196 21 H -0.177 1.177 22 C -0.007 4.007 23 C -0.097 4.097 24 H 0.096 0.904 25 C -0.134 4.134 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.526 18.286 10.004 21.139 hybrid contribution -0.296 -0.383 0.040 0.486 sum 3.230 17.902 10.044 20.780 Atomic orbital electron populations 1.22427 0.87505 1.02091 1.00659 1.61963 1.07957 1.14400 1.43813 1.22440 1.01487 0.87979 1.00454 1.21686 0.95428 0.92956 0.91474 0.93140 1.21616 0.93272 1.01171 0.98310 1.21143 0.99945 0.92126 0.99325 1.21832 0.95766 0.95878 0.97664 0.90194 1.21472 0.87916 0.91831 0.98321 1.49172 1.15127 1.32944 1.42263 1.18452 0.88533 0.77986 0.79390 1.90535 1.33390 1.56078 1.72443 1.21360 0.99653 1.16354 1.22825 0.89703 1.27044 0.99607 0.94433 0.97658 1.70196 1.27723 1.15638 1.31736 0.85056 0.77068 0.78483 0.77585 1.17647 1.19614 1.17732 1.21755 0.91337 0.95301 0.92292 1.21799 0.95900 0.92302 0.99678 0.90350 1.21454 1.00600 0.95224 0.96093 0.94957 0.91356 0.91981 0.90572 0.91455 0.95065 0.90122 0.90647 0.90596 0.91963 0.93442 0.93012 0.91501 0.94921 0.93614 0.91312 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.10 127.69 1.16 1.56 16 2 N -0.56 -10.87 3.74 -922.59 -3.45 -14.33 16 3 C 0.02 0.36 8.99 127.69 1.15 1.51 16 4 C 0.09 1.70 2.19 45.03 0.10 1.79 16 5 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 6 C -0.11 -1.75 5.03 30.73 0.15 -1.60 16 7 C -0.09 -1.88 5.61 30.38 0.17 -1.71 16 8 C -0.09 -2.62 2.28 -10.62 -0.02 -2.65 16 9 H 0.08 2.13 7.93 -2.39 -0.02 2.11 16 10 C 0.13 4.94 5.80 85.82 0.50 5.44 16 11 N -0.66 -32.97 3.38 -817.94 -2.77 -35.73 16 12 C 0.55 34.59 7.79 86.36 0.67 35.26 16 13 O -0.64 -45.82 15.31 -4.32 -0.07 -45.88 16 14 C -0.57 -33.96 9.07 24.83 0.23 -33.73 16 15 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 16 C 0.03 1.59 5.50 85.30 0.47 2.06 16 17 N -0.82 -52.46 11.83 21.84 0.26 -52.20 16 18 Si 1.00 42.35 29.56 68.60 2.03 44.37 16 19 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 22 C 0.12 4.89 6.56 85.98 0.56 5.46 16 23 C -0.08 -2.37 2.40 -10.32 -0.02 -2.40 16 24 H 0.08 2.67 7.37 -2.38 -0.02 2.66 16 25 C -0.10 -2.15 4.81 30.41 0.15 -2.00 16 26 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 28 H 0.06 1.32 6.12 -2.39 -0.01 1.31 16 29 H 0.08 1.07 6.49 -2.38 -0.02 1.06 16 30 H 0.07 0.97 8.00 -2.39 -0.02 0.95 16 31 H 0.03 0.41 8.11 -2.39 -0.02 0.39 16 32 H 0.08 1.10 6.11 -2.39 -0.01 1.08 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.51 7.92 -2.39 -0.02 1.49 16 36 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.28 15.81 8.29 -92.71 -0.77 15.05 16 39 H 0.03 1.53 8.07 -2.38 -0.02 1.51 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 1.52 6.15 -2.39 -0.01 1.51 16 42 H 0.08 1.63 7.99 -2.39 -0.02 1.61 16 Total: -1.00 -80.03 320.98 2.25 -77.78 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.98 Total: 16.99 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.26 Total: 9.00 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -5.96 Total: -102.26 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.07 Total: -45.88 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -80.03 2.25 -77.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262496557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.423 kcal (2) G-P(sol) polarization free energy of solvation -80.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds