Wall clock time and date at job start Mon Mar 30 2020 01:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 H 1.08995 * 109.73811 * 54.99888 * 4 2 1 6 6 C 1.53329 * 109.73814 * 294.34334 * 4 2 1 7 7 C 1.52592 * 108.40733 * 176.21838 * 6 4 2 8 8 C 1.53001 * 111.05527 * 62.35282 * 7 6 4 9 9 H 1.09000 * 112.08000 * 74.01604 * 8 7 6 10 10 C 1.55345 * 106.41962 * 197.21348 * 8 7 6 11 11 N 1.47170 * 106.96681 * 91.62349 * 10 8 7 12 12 C 1.34776 * 125.65358 * 180.98116 * 11 10 8 13 13 O 1.21686 * 120.00418 * 179.97438 * 12 11 10 14 14 C 1.46376 * 119.99922 * 359.96635 * 12 11 10 15 15 H 1.08005 * 119.99489 * 0.02562 * 14 12 11 16 16 C 1.40043 * 120.00124 * 180.02562 * 14 12 11 17 17 N 1.30674 * 119.99898 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99933 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47260 * 89.99809 * 18 16 14 20 20 H 1.48498 * 109.47249 * 209.99719 * 18 16 14 21 21 H 1.48499 * 109.47160 * 330.00107 * 18 16 14 22 22 C 1.47819 * 108.70202 * 0.95080 * 11 10 8 23 23 C 1.53910 * 104.06028 * 23.35374 * 22 11 10 24 24 H 1.09005 * 109.20174 * 77.29963 * 23 22 11 25 25 C 1.50734 * 112.98047 * 198.50431 * 23 22 11 26 26 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 27 27 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 28 28 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 29 29 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 30 30 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 32 32 H 1.09006 * 109.68170 * 295.94466 * 6 4 2 33 33 H 1.09004 * 109.68077 * 56.45021 * 6 4 2 34 34 H 1.08999 * 109.16439 * 182.75734 * 7 6 4 35 35 H 1.08997 * 109.16348 * 301.94337 * 7 6 4 36 36 H 1.09007 * 109.96297 * 210.99678 * 10 8 7 37 37 H 1.08996 * 109.96327 * 332.20413 * 10 8 7 38 38 H 0.97004 * 119.99203 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.51204 * 141.99389 * 22 11 10 40 40 H 1.08997 * 110.51680 * 264.57768 * 22 11 10 41 41 H 1.09004 * 109.06661 * 304.59925 * 25 23 22 42 42 H 1.09002 * 108.98464 * 185.76377 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.5781 -1.7728 1.1281 6 6 1.6257 -0.0644 2.4498 7 6 2.1034 -0.9315 3.6109 8 6 3.6254 -1.0869 3.5911 9 1 4.1342 -0.1782 3.9127 10 6 3.9546 -2.3022 4.5011 11 7 3.9824 -3.4919 3.6353 12 6 4.2152 -4.7552 4.0433 13 8 4.2137 -5.6655 3.2358 14 6 4.4700 -5.0321 5.4578 15 1 4.4710 -4.2242 6.1746 16 6 4.7125 -6.3447 5.8817 17 7 4.7107 -7.3222 5.0146 18 14 5.0369 -6.6982 7.6871 19 1 3.7512 -6.9773 8.3757 20 1 5.9295 -7.8788 7.8077 21 1 5.6879 -5.5194 8.3131 22 6 3.7119 -3.0721 2.2440 23 6 4.1110 -1.5859 2.2176 24 1 5.1972 -1.5072 2.1709 25 6 3.5195 -0.8383 1.0500 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 -1.0253 -0.0709 29 1 1.6459 1.8948 0.8900 30 1 3.0850 1.3425 -0.0005 31 1 1.6459 1.8949 -0.8899 32 1 2.1123 0.9099 2.4949 33 1 0.5445 0.0624 2.5062 34 1 1.8033 -0.4680 4.5507 35 1 1.6422 -1.9162 3.5355 36 1 4.9277 -2.1618 4.9718 37 1 3.1849 -2.4147 5.2646 38 1 4.8783 -8.2313 5.3084 39 1 4.3237 -3.6443 1.5466 40 1 2.6542 -3.1897 2.0082 41 1 3.7988 -1.3435 0.1254 42 1 3.9231 0.1742 1.0360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262496558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:42 Heat of formation + Delta-G solvation = -35.887076 kcal Electronic energy + Delta-G solvation = -21325.170456 eV Core-core repulsion = 18304.629258 eV Total energy + Delta-G solvation = -3020.541198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26638 -37.80005 -36.04501 -33.13263 -32.40707 -31.52181 -29.36634 -27.92222 -27.09072 -25.95978 -24.20061 -23.01955 -21.81362 -20.30260 -19.27522 -18.30447 -16.65747 -16.22991 -15.52711 -15.15196 -14.89415 -14.43657 -14.36231 -13.99931 -13.90980 -13.36312 -13.10594 -12.85401 -12.50444 -12.18602 -11.98008 -11.92879 -11.74836 -11.58858 -11.29849 -11.24064 -11.09063 -10.99844 -10.81962 -10.74116 -10.40837 -10.18092 -10.14146 -9.90685 -9.76177 -8.83960 -8.30444 -7.60870 -7.12478 -6.18035 -4.62470 3.14453 3.21129 3.24668 3.87709 4.10012 4.56503 4.62578 4.71515 4.73939 4.90286 5.09730 5.11526 5.21198 5.28253 5.37549 5.41688 5.45275 5.52362 5.60867 5.72733 5.75441 5.78342 5.81701 5.85921 5.94417 6.01980 6.11428 6.14778 6.23988 6.30363 6.44915 6.46246 6.64108 6.72717 6.73834 6.98905 7.01419 7.42160 7.45699 8.13150 8.44799 9.03646 9.53884 10.60008 10.79237 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039652 B = 0.004440 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.969025 B = 6305.232579 C = 6516.536431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.541 5.541 3 C 0.018 3.982 4 C 0.082 3.918 5 H 0.088 0.912 6 C -0.148 4.148 7 C -0.108 4.108 8 C -0.096 4.096 9 H 0.084 0.916 10 C 0.124 3.876 11 N -0.645 5.645 12 C 0.571 3.429 13 O -0.577 6.577 14 C -0.539 4.539 15 H 0.068 0.932 16 C 0.087 3.913 17 N -0.768 5.768 18 Si 0.907 3.093 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.265 1.265 22 C 0.123 3.877 23 C -0.094 4.094 24 H 0.074 0.926 25 C -0.095 4.095 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.268 0.732 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 17.122 -4.889 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.263 5.263 3 C -0.131 4.131 4 C -0.026 4.026 5 H 0.106 0.894 6 C -0.187 4.187 7 C -0.146 4.146 8 C -0.115 4.115 9 H 0.102 0.898 10 C 0.000 4.000 11 N -0.386 5.386 12 C 0.377 3.623 13 O -0.460 6.460 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.133 4.133 17 N -0.397 5.397 18 Si 0.732 3.268 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.001 4.001 23 C -0.114 4.114 24 H 0.093 0.907 25 C -0.134 4.134 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.259 16.066 -5.792 17.870 hybrid contribution -0.154 0.323 1.751 1.788 sum -5.413 16.390 -4.041 17.727 Atomic orbital electron populations 1.22390 0.87697 1.02313 1.00242 1.62209 1.07668 1.13705 1.42740 1.22458 1.01129 0.89233 1.00245 1.21831 0.95846 0.97678 0.87247 0.89395 1.22167 1.00439 0.99611 0.96489 1.21473 0.95341 1.00355 0.97408 1.22233 0.95691 0.97869 0.95674 0.89799 1.21899 1.00101 0.84895 0.93146 1.48790 1.77392 1.06886 1.05501 1.18025 0.76480 0.78107 0.89663 1.90608 1.56741 1.42616 1.55992 1.20897 1.51437 0.93570 0.91652 0.91356 1.25728 0.92957 0.95876 0.98718 1.70029 1.35095 1.00101 1.34498 0.86377 0.78766 0.78540 0.83120 1.19736 1.20426 1.18898 1.21708 0.99013 0.92086 0.87295 1.21442 1.00440 0.95766 0.93760 0.90748 1.20941 0.93776 1.00275 0.98367 0.91728 0.95364 0.91350 0.95418 0.90976 0.91918 0.91911 0.92233 0.92211 0.91283 0.93228 0.92781 0.92104 0.91954 0.93689 0.91093 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.34 60.07 0.56 0.77 16 2 N -0.54 -5.98 5.02 -243.08 -1.22 -7.20 16 3 C 0.02 0.16 8.77 60.06 0.53 0.69 16 4 C 0.08 0.99 2.08 -67.64 -0.14 0.85 16 5 H 0.09 1.22 6.80 -51.93 -0.35 0.87 16 6 C -0.15 -1.67 4.46 -26.77 -0.12 -1.79 16 7 C -0.11 -1.41 4.63 -26.94 -0.12 -1.53 16 8 C -0.10 -1.36 3.61 -88.86 -0.32 -1.68 16 9 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 10 C 0.12 2.32 5.35 -2.43 -0.01 2.30 16 11 N -0.65 -15.08 3.34 -171.71 -0.57 -15.66 16 12 C 0.57 16.77 7.78 -12.99 -0.10 16.67 16 13 O -0.58 -19.27 15.30 5.20 0.08 -19.19 16 14 C -0.54 -15.50 9.06 -35.63 -0.32 -15.82 16 15 H 0.07 1.81 7.16 -52.48 -0.38 1.44 16 16 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 17 N -0.77 -23.37 11.83 55.55 0.66 -22.71 16 18 Si 0.91 20.35 29.56 -169.99 -5.02 15.33 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 22 C 0.12 2.42 5.84 -2.84 -0.02 2.40 16 23 C -0.09 -1.40 2.81 -90.76 -0.26 -1.66 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 25 C -0.10 -1.18 4.53 -27.96 -0.13 -1.31 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.03 0.26 6.41 -51.93 -0.33 -0.07 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.25 6.62 -51.93 -0.34 -0.10 16 30 H 0.07 0.65 6.09 -51.93 -0.32 0.34 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.66 6.74 -51.93 -0.35 0.31 16 33 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.07 7.16 -51.93 -0.37 0.70 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 1.01 7.74 -51.93 -0.40 0.61 16 38 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 39 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 40 H 0.05 0.88 6.17 -51.93 -0.32 0.55 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.69 6.22 -51.93 -0.32 0.36 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -34.05 315.13 -8.64 -42.69 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.76 Total: -0.26 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -0.55 Total: 2.26 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -1.14 Total: -45.57 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.08 Total: -19.19 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.05 -8.64 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262496558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.801 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds