Wall clock time and date at job start Mon Mar 30 2020 01:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 H 1.08995 * 109.73811 * 54.99888 * 4 2 1 6 6 C 1.53329 * 109.73814 * 294.34334 * 4 2 1 7 7 C 1.52592 * 108.40733 * 176.21838 * 6 4 2 8 8 C 1.53001 * 111.05527 * 62.35282 * 7 6 4 9 9 H 1.09000 * 112.08000 * 74.01604 * 8 7 6 10 10 C 1.55345 * 106.41962 * 197.21348 * 8 7 6 11 11 N 1.47170 * 106.96681 * 91.62349 * 10 8 7 12 12 C 1.34776 * 125.65358 * 180.98116 * 11 10 8 13 13 O 1.21686 * 120.00418 * 179.97438 * 12 11 10 14 14 C 1.46376 * 119.99922 * 359.96635 * 12 11 10 15 15 H 1.08005 * 119.99489 * 0.02562 * 14 12 11 16 16 C 1.40043 * 120.00124 * 180.02562 * 14 12 11 17 17 N 1.30674 * 119.99898 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99933 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47260 * 89.99809 * 18 16 14 20 20 H 1.48498 * 109.47249 * 209.99719 * 18 16 14 21 21 H 1.48499 * 109.47160 * 330.00107 * 18 16 14 22 22 C 1.47819 * 108.70202 * 0.95080 * 11 10 8 23 23 C 1.53910 * 104.06028 * 23.35374 * 22 11 10 24 24 H 1.09005 * 109.20174 * 77.29963 * 23 22 11 25 25 C 1.50734 * 112.98047 * 198.50431 * 23 22 11 26 26 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 27 27 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 28 28 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 29 29 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 30 30 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 32 32 H 1.09006 * 109.68170 * 295.94466 * 6 4 2 33 33 H 1.09004 * 109.68077 * 56.45021 * 6 4 2 34 34 H 1.08999 * 109.16439 * 182.75734 * 7 6 4 35 35 H 1.08997 * 109.16348 * 301.94337 * 7 6 4 36 36 H 1.09007 * 109.96297 * 210.99678 * 10 8 7 37 37 H 1.08996 * 109.96327 * 332.20413 * 10 8 7 38 38 H 0.97004 * 119.99203 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.51204 * 141.99389 * 22 11 10 40 40 H 1.08997 * 110.51680 * 264.57768 * 22 11 10 41 41 H 1.09004 * 109.06661 * 304.59925 * 25 23 22 42 42 H 1.09002 * 108.98464 * 185.76377 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.5781 -1.7728 1.1281 6 6 1.6257 -0.0644 2.4498 7 6 2.1034 -0.9315 3.6109 8 6 3.6254 -1.0869 3.5911 9 1 4.1342 -0.1782 3.9127 10 6 3.9546 -2.3022 4.5011 11 7 3.9824 -3.4919 3.6353 12 6 4.2152 -4.7552 4.0433 13 8 4.2137 -5.6655 3.2358 14 6 4.4700 -5.0321 5.4578 15 1 4.4710 -4.2242 6.1746 16 6 4.7125 -6.3447 5.8817 17 7 4.7107 -7.3222 5.0146 18 14 5.0369 -6.6982 7.6871 19 1 3.7512 -6.9773 8.3757 20 1 5.9295 -7.8788 7.8077 21 1 5.6879 -5.5194 8.3131 22 6 3.7119 -3.0721 2.2440 23 6 4.1110 -1.5859 2.2176 24 1 5.1972 -1.5072 2.1709 25 6 3.5195 -0.8383 1.0500 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 -1.0253 -0.0709 29 1 1.6459 1.8948 0.8900 30 1 3.0850 1.3425 -0.0005 31 1 1.6459 1.8949 -0.8899 32 1 2.1123 0.9099 2.4949 33 1 0.5445 0.0624 2.5062 34 1 1.8033 -0.4680 4.5507 35 1 1.6422 -1.9162 3.5355 36 1 4.9277 -2.1618 4.9718 37 1 3.1849 -2.4147 5.2646 38 1 4.8783 -8.2313 5.3084 39 1 4.3237 -3.6443 1.5466 40 1 2.6542 -3.1897 2.0082 41 1 3.7988 -1.3435 0.1254 42 1 3.9231 0.1742 1.0360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262496558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:42 Heat of formation + Delta-G solvation = -60.445720 kcal Electronic energy + Delta-G solvation = -21326.235399 eV Core-core repulsion = 18304.629258 eV Total energy + Delta-G solvation = -3021.606141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51342 -39.28835 -37.77664 -34.79059 -34.40540 -32.70046 -30.77292 -29.13029 -28.38670 -27.58851 -25.53963 -24.19174 -23.10448 -21.37515 -21.21046 -19.55744 -18.49334 -17.63992 -17.30345 -16.34395 -16.12244 -15.94345 -15.65798 -15.24228 -14.99019 -14.80205 -14.60686 -14.22820 -13.77523 -13.67822 -13.40053 -13.09208 -12.97276 -12.82830 -12.73943 -12.60527 -12.46845 -12.44951 -12.31848 -12.10846 -11.99477 -11.83107 -11.44367 -11.07033 -10.96297 -10.88592 -9.90197 -9.11342 -9.08637 -8.32319 -6.88350 1.37340 1.39460 1.55012 2.21770 2.42218 2.85586 3.04727 3.52371 3.55672 3.68723 3.75614 4.01781 4.12558 4.25703 4.36252 4.38829 4.45206 4.51865 4.55055 4.60897 4.71847 4.75243 4.79144 4.80437 4.88495 4.93802 5.02520 5.04810 5.11228 5.16564 5.21141 5.25493 5.28793 5.32288 5.44259 5.54283 5.64653 6.01202 6.16251 6.21713 6.39596 6.83394 7.46923 8.42949 8.64336 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039652 B = 0.004440 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.969025 B = 6305.232579 C = 6516.536431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.555 5.555 3 C 0.016 3.984 4 C 0.084 3.916 5 H 0.059 0.941 6 C -0.137 4.137 7 C -0.105 4.105 8 C -0.077 4.077 9 H 0.123 0.877 10 C 0.116 3.884 11 N -0.653 5.653 12 C 0.549 3.451 13 O -0.636 6.636 14 C -0.564 4.564 15 H 0.086 0.914 16 C 0.027 3.973 17 N -0.823 5.823 18 Si 1.000 3.000 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.247 1.247 22 C 0.119 3.881 23 C -0.079 4.079 24 H 0.076 0.924 25 C -0.088 4.088 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.275 0.725 39 H 0.031 0.969 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 20.404 -3.384 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.277 5.277 3 C -0.131 4.131 4 C -0.024 4.024 5 H 0.077 0.923 6 C -0.176 4.176 7 C -0.143 4.143 8 C -0.096 4.096 9 H 0.141 0.859 10 C -0.007 4.007 11 N -0.390 5.390 12 C 0.356 3.644 13 O -0.524 6.524 14 C -0.601 4.601 15 H 0.104 0.896 16 C -0.188 4.188 17 N -0.453 5.453 18 Si 0.818 3.182 19 H -0.185 1.185 20 H -0.196 1.196 21 H -0.171 1.171 22 C -0.004 4.004 23 C -0.098 4.098 24 H 0.094 0.906 25 C -0.126 4.126 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.327 19.431 -4.299 20.602 hybrid contribution -0.181 -0.681 1.194 1.386 sum -5.508 18.751 -3.105 19.788 Atomic orbital electron populations 1.22416 0.86977 1.02042 1.01221 1.62179 1.08480 1.14972 1.42110 1.22524 1.01302 0.88043 1.01245 1.21681 0.95386 0.96815 0.88539 0.92299 1.22078 1.01064 0.99763 0.94651 1.21428 0.94204 0.99291 0.99360 1.22268 0.96852 0.97017 0.93428 0.85862 1.22184 1.00165 0.84859 0.93534 1.48611 1.75724 1.06779 1.07907 1.18461 0.76464 0.79445 0.90062 1.90544 1.59330 1.45186 1.57298 1.21387 1.51886 0.94903 0.91894 0.89585 1.27048 0.91705 0.95109 1.04945 1.70208 1.36150 1.00971 1.37936 0.84997 0.79157 0.78957 0.75054 1.18484 1.19589 1.17050 1.21855 0.98286 0.95400 0.84904 1.21355 1.00729 0.92105 0.95656 0.90589 1.20879 0.94102 1.01105 0.96510 0.90289 0.94695 0.92432 0.94512 0.90640 0.90848 0.89781 0.91549 0.90364 0.94587 0.93157 0.93015 0.91512 0.94995 0.94079 0.91945 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.34 127.69 1.19 1.57 16 2 N -0.55 -11.08 5.02 -922.98 -4.63 -15.71 16 3 C 0.02 0.25 8.77 127.69 1.12 1.37 16 4 C 0.08 1.91 2.08 44.97 0.09 2.00 16 5 H 0.06 1.67 6.80 -2.39 -0.02 1.66 16 6 C -0.14 -2.66 4.46 30.57 0.14 -2.52 16 7 C -0.10 -2.51 4.63 30.46 0.14 -2.37 16 8 C -0.08 -1.99 3.61 -9.65 -0.03 -2.03 16 9 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 10 C 0.12 4.26 5.35 87.06 0.47 4.73 16 11 N -0.65 -31.72 3.34 -815.40 -2.72 -34.44 16 12 C 0.55 33.93 7.78 86.36 0.67 34.60 16 13 O -0.64 -45.31 15.30 -4.30 -0.07 -45.38 16 14 C -0.56 -33.29 9.06 24.83 0.23 -33.07 16 15 H 0.09 4.58 7.16 -2.91 -0.02 4.56 16 16 C 0.03 1.54 5.50 85.30 0.47 2.01 16 17 N -0.82 -52.01 11.83 21.83 0.26 -51.75 16 18 Si 1.00 41.83 29.56 68.60 2.03 43.86 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 C 0.12 4.91 5.84 86.43 0.50 5.42 16 23 C -0.08 -2.26 2.81 -10.89 -0.03 -2.29 16 24 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 25 C -0.09 -2.01 4.53 29.80 0.13 -1.87 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.03 0.56 6.41 -2.39 -0.02 0.54 16 28 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 29 H 0.04 0.49 6.62 -2.38 -0.02 0.47 16 30 H 0.07 1.07 6.09 -2.39 -0.01 1.05 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.35 6.74 -2.38 -0.02 1.33 16 33 H 0.07 1.24 6.43 -2.38 -0.02 1.22 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.10 7.16 -2.39 -0.02 1.09 16 36 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.05 1.92 7.74 -2.39 -0.02 1.90 16 38 H 0.27 15.66 8.29 -92.71 -0.77 14.89 16 39 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 40 H 0.04 1.71 6.17 -2.39 -0.01 1.70 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.63 6.22 -2.39 -0.01 1.62 16 Total: -1.00 -79.43 315.13 0.96 -78.47 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.00 Total: 17.42 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.09 Total: 7.54 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -7.09 Total: -101.90 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.07 Total: -45.38 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -79.43 0.96 -78.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262496558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.028 kcal (2) G-P(sol) polarization free energy of solvation -79.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds