Wall clock time and date at job start Mon Mar 30 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36940 * 119.99824 * 2 1 4 4 H 1.07998 * 119.99933 * 203.04485 * 3 2 1 5 5 C 1.38807 * 119.99837 * 23.04475 * 3 2 1 6 6 N 1.31623 * 120.00529 * 12.92818 * 5 3 2 7 7 Si 1.86804 * 119.99691 * 192.92927 * 5 3 2 8 8 H 1.48498 * 109.47286 * 90.00105 * 7 5 3 9 9 H 1.48504 * 109.46714 * 210.00102 * 7 5 3 10 10 H 1.48499 * 109.47139 * 329.99600 * 7 5 3 11 11 C 1.46497 * 119.99765 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46998 * 90.00462 * 11 2 1 13 13 C 1.53002 * 109.46910 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.47351 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00210 * 179.97438 * 14 13 12 16 16 O 1.21277 * 119.99885 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99909 * 179.97438 * 15 14 13 18 18 C 1.53001 * 115.55161 * 179.97438 * 17 15 14 19 19 C 1.53002 * 117.49424 * 34.33092 * 18 17 15 20 20 C 1.52992 * 117.49937 * 325.67407 * 18 17 15 21 21 C 1.53002 * 117.50064 * 34.33196 * 17 15 14 22 22 C 1.53000 * 117.49911 * 325.67042 * 17 15 14 23 23 H 1.08998 * 109.47246 * 275.12008 * 1 2 3 24 24 H 1.08998 * 109.47132 * 35.12452 * 1 2 3 25 25 H 1.09005 * 109.47119 * 155.11966 * 1 2 3 26 26 H 0.96992 * 120.00238 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47350 * 329.99653 * 11 2 1 28 28 H 1.09002 * 109.46845 * 209.99984 * 11 2 1 29 29 H 1.08996 * 109.47194 * 59.99926 * 12 11 2 30 30 H 1.09000 * 109.47309 * 299.99101 * 12 11 2 31 31 H 1.09002 * 109.47064 * 299.99602 * 13 12 11 32 32 H 1.08999 * 109.47219 * 59.99324 * 13 12 11 33 33 H 0.97003 * 119.99595 * 359.97438 * 14 13 12 34 34 H 1.08996 * 115.54967 * 179.97438 * 18 17 15 35 35 H 1.09000 * 117.50279 * 359.97438 * 19 18 17 36 36 H 1.09000 * 117.49746 * 145.01871 * 19 18 17 37 37 H 1.09002 * 117.49934 * 214.97829 * 20 18 17 38 38 H 1.09011 * 117.49913 * 359.97223 * 20 18 17 39 39 H 1.09006 * 117.49586 * 359.97438 * 21 17 15 40 40 H 1.08996 * 117.50193 * 145.02022 * 21 17 15 41 41 H 1.09008 * 117.50133 * 214.97800 * 22 17 15 42 42 H 1.09003 * 117.50165 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1651 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4117 2.2597 1.1458 7 14 2.3159 4.0074 0.1455 8 1 1.7988 4.5534 -1.1350 9 1 1.9758 4.9363 1.2531 10 1 3.7908 3.8578 0.0602 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4418 13 6 3.2181 -3.0357 -1.4411 14 7 3.4618 -3.4596 -2.8221 15 6 4.1251 -4.6068 -3.0678 16 8 4.5198 -5.2885 -2.1457 17 6 4.3753 -5.0430 -4.4885 18 6 5.1376 -6.3598 -4.6499 19 6 4.8878 -7.4528 -3.6088 20 6 6.2124 -6.6858 -3.6112 21 6 4.6257 -3.9500 -5.5295 22 6 3.3006 -4.7165 -5.5274 23 1 -0.3633 0.0917 1.0235 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3634 -0.9323 -0.4324 26 1 -0.0154 3.0662 1.4743 27 1 1.6084 -2.0281 0.5148 28 1 3.1499 -1.1382 0.5144 29 1 3.0417 -0.9516 -1.9558 30 1 1.5002 -1.8416 -1.9556 31 1 4.1705 -2.9047 -0.9275 32 1 2.6294 -3.7953 -0.9268 33 1 3.1458 -2.9145 -3.5596 34 1 5.3181 -6.6755 -5.6774 35 1 4.1808 -7.2336 -2.8087 36 1 4.9048 -8.4874 -3.9514 37 1 7.1004 -7.2161 -3.9552 38 1 6.3769 -5.9619 -2.8129 39 1 4.6090 -2.9154 -5.1868 40 1 5.3327 -4.1694 -6.3295 41 1 3.1365 -5.4399 -6.3262 42 1 2.4124 -4.1866 -5.1833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264997899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:21 Heat of formation + Delta-G solvation = 14.619586 kcal Electronic energy + Delta-G solvation = -20087.188462 eV Core-core repulsion = 17068.837397 eV Total energy + Delta-G solvation = -3018.351065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49792 -38.46624 -37.79471 -36.85770 -35.61472 -33.64811 -31.56649 -27.97897 -27.28223 -25.55353 -23.91858 -23.62266 -22.89612 -22.52750 -22.14540 -20.38024 -18.73237 -17.73859 -17.38631 -16.79067 -16.64474 -16.28738 -15.70440 -15.58663 -15.17220 -14.75210 -14.60232 -14.48391 -14.09077 -13.41722 -13.30783 -13.07601 -12.80465 -12.66866 -12.57596 -12.50321 -12.34690 -12.30337 -12.12947 -12.07079 -11.84780 -11.72869 -11.49650 -11.08361 -10.67150 -10.53200 -10.37238 -10.07065 -8.78486 -7.82656 -5.32772 1.46510 1.47249 1.47753 1.56971 2.14126 2.51620 2.67998 3.28201 3.30527 3.46081 3.55310 3.64514 3.94036 3.98940 4.09642 4.23043 4.30240 4.37332 4.37956 4.45195 4.63505 4.73564 4.77867 4.84232 4.86594 4.87605 4.91119 5.00489 5.05748 5.18173 5.23565 5.26844 5.34136 5.44155 5.47604 5.49798 5.63273 5.70911 6.32906 6.53953 7.15255 7.23749 7.87173 8.30984 9.20436 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032789 B = 0.003316 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.744203 B = 8442.571203 C = 8666.908715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.264 4.264 4 H 0.072 0.928 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.284 1.284 9 H -0.296 1.296 10 H -0.268 1.268 11 C 0.150 3.850 12 C -0.126 4.126 13 C 0.134 3.866 14 N -0.719 5.719 15 C 0.538 3.462 16 O -0.570 6.570 17 C -0.151 4.151 18 C -0.103 4.103 19 C -0.177 4.177 20 C -0.178 4.178 21 C -0.143 4.143 22 C -0.140 4.140 23 H 0.003 0.997 24 H 0.015 0.985 25 H 0.033 0.967 26 H 0.248 0.752 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.410 0.590 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 -15.751 -16.551 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.344 5.344 3 C -0.394 4.394 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.211 1.211 9 H -0.223 1.223 10 H -0.193 1.193 11 C 0.024 3.976 12 C -0.167 4.167 13 C 0.009 3.991 14 N -0.371 5.371 15 C 0.326 3.674 16 O -0.450 6.450 17 C -0.154 4.154 18 C -0.121 4.121 19 C -0.214 4.214 20 C -0.215 4.215 21 C -0.180 4.180 22 C -0.177 4.177 23 H 0.021 0.979 24 H 0.034 0.966 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.246 0.754 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.474 -16.094 -15.786 23.750 hybrid contribution -0.061 1.371 0.256 1.396 sum 7.413 -14.724 -15.530 22.648 Atomic orbital electron populations 1.20547 0.82807 0.95995 0.97606 1.44152 1.02143 1.01705 1.86410 1.19545 0.98543 0.86772 1.34538 0.91039 1.25830 0.98687 1.02024 0.98480 1.70239 1.20925 1.27623 1.39956 0.85225 0.78431 0.79692 0.76851 1.21093 1.22314 1.19266 1.20767 0.95680 0.86932 0.94252 1.22148 0.99850 0.94744 0.99945 1.21147 0.99503 0.95781 0.82633 1.45985 1.57851 1.23961 1.09308 1.20061 0.76661 0.80186 0.90505 1.90633 1.52322 1.54657 1.47390 1.20986 1.07605 0.98622 0.88183 1.21540 1.01359 0.92663 0.96509 1.22987 1.00253 0.96521 1.01616 1.22982 0.93034 1.03823 1.01677 1.23263 1.00198 0.95570 0.98947 1.23265 0.92573 1.03002 0.98891 0.97897 0.96573 0.94892 0.94288 0.93340 0.93941 0.92204 0.91606 0.92611 0.92092 0.75379 0.84595 0.90306 0.87778 0.87827 0.90410 0.87860 0.85671 0.85611 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.67 8.98 127.77 1.15 9.82 16 2 N -0.62 -31.00 2.92 -726.93 -2.12 -33.13 16 3 C -0.26 -14.44 9.65 84.03 0.81 -13.63 16 4 H 0.07 3.78 7.86 -2.91 -0.02 3.75 16 5 C -0.06 -3.11 5.10 84.86 0.43 -2.67 16 6 N -0.94 -56.10 10.71 21.65 0.23 -55.87 16 7 Si 0.97 44.92 29.57 68.60 2.03 46.94 16 8 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 9 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 C 0.15 5.94 5.64 86.38 0.49 6.43 16 12 C -0.13 -3.96 5.65 30.60 0.17 -3.78 16 13 C 0.13 3.74 5.67 86.38 0.49 4.23 16 14 N -0.72 -17.02 5.35 -463.07 -2.48 -19.50 16 15 C 0.54 13.91 7.24 87.66 0.63 14.54 16 16 O -0.57 -18.90 11.83 -3.02 -0.04 -18.93 16 17 C -0.15 -2.76 2.46 -52.93 -0.13 -2.89 16 18 C -0.10 -1.84 5.84 -10.80 -0.06 -1.90 16 19 C -0.18 -3.80 9.66 30.62 0.30 -3.50 16 20 C -0.18 -3.87 9.66 30.61 0.30 -3.57 16 21 C -0.14 -1.77 9.60 30.62 0.29 -1.47 16 22 C -0.14 -1.69 9.60 30.62 0.29 -1.40 16 23 H 0.00 0.15 7.34 -2.39 -0.02 0.13 16 24 H 0.02 0.84 7.34 -2.39 -0.02 0.82 16 25 H 0.03 1.36 8.03 -2.38 -0.02 1.34 16 26 H 0.25 14.36 8.31 -92.71 -0.77 13.58 16 27 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 28 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.41 7.69 6.66 -92.71 -0.62 7.07 16 34 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 2.18 6.28 -2.39 -0.01 2.17 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.18 6.28 -2.38 -0.01 2.17 16 39 H 0.10 1.28 7.55 -2.38 -0.02 1.26 16 40 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.10 1.23 7.55 -2.39 -0.02 1.21 16 Total: -1.00 -68.24 339.07 3.16 -65.08 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.38 Total: 15.20 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.16 Total: 0.20 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -4.37 Total: -108.49 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.04 Total: -18.93 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -68.24 3.16 -65.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264997899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.702 kcal (2) G-P(sol) polarization free energy of solvation -68.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds