Wall clock time and date at job start Mon Mar 30 2020 00:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46507 * 109.47188 * 2 1 4 4 C 1.36937 * 120.00010 * 275.31205 * 3 2 1 5 5 H 1.07995 * 119.99739 * 37.58054 * 4 3 2 6 6 C 1.38813 * 119.99693 * 217.57707 * 4 3 2 7 7 N 1.31621 * 120.00190 * 21.42603 * 6 4 3 8 8 Si 1.86796 * 119.99929 * 201.42424 * 6 4 3 9 9 H 1.48503 * 109.47130 * 59.99839 * 8 6 4 10 10 H 1.48496 * 109.47659 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47210 * 300.00083 * 8 6 4 12 12 C 1.46501 * 119.99817 * 95.31027 * 3 2 1 13 13 C 1.52995 * 109.47196 * 270.00360 * 12 3 2 14 14 C 1.53004 * 109.47447 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.47198 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99575 * 179.72516 * 15 14 13 17 17 O 1.21617 * 120.00219 * 0.02562 * 16 15 14 18 18 C 1.47096 * 119.99859 * 180.02562 * 16 15 14 19 19 C 1.32991 * 120.00393 * 179.97438 * 18 16 15 20 20 C 1.51408 * 136.31422 * 359.62993 * 19 18 16 21 21 C 1.53372 * 87.52014 * 206.05688 * 20 19 18 22 22 C 1.51402 * 136.32085 * 180.02562 * 19 18 16 23 23 H 1.09003 * 109.47150 * 299.99909 * 1 2 3 24 24 H 1.08997 * 109.47542 * 59.99642 * 1 2 3 25 25 H 1.09001 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47218 * 240.00634 * 2 1 3 27 27 H 1.09004 * 109.47665 * 120.00005 * 2 1 3 28 28 H 0.97004 * 119.99826 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47214 * 149.99828 * 12 3 2 30 30 H 1.09004 * 109.47208 * 29.99843 * 12 3 2 31 31 H 1.09001 * 109.47473 * 59.99627 * 13 12 3 32 32 H 1.09006 * 109.47129 * 299.99959 * 13 12 3 33 33 H 1.09005 * 109.46602 * 59.99926 * 14 13 12 34 34 H 1.08998 * 109.47161 * 300.00231 * 14 13 12 35 35 H 0.96994 * 120.00270 * 0.02562 * 15 14 13 36 36 H 1.08005 * 120.00254 * 359.97438 * 18 16 15 37 37 H 1.09007 * 113.55918 * 320.63887 * 20 19 18 38 38 H 1.09001 * 113.56447 * 91.36929 * 20 19 18 39 39 H 1.08997 * 113.96982 * 220.28864 * 21 20 19 40 40 H 1.09000 * 113.60003 * 88.79311 * 21 20 19 41 41 H 1.09000 * 113.56141 * 268.62759 * 22 19 18 42 42 H 1.09005 * 113.56377 * 39.35719 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9626 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6584 9 1 1.9626 5.1786 -2.3343 10 1 4.3621 5.0608 -2.6669 11 1 2.8844 3.6726 -3.9966 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 6 1.5133 3.4191 3.1557 15 7 0.3350 4.0951 3.7044 16 6 0.4236 4.7619 4.8723 17 8 1.4818 4.8028 5.4704 18 6 -0.7595 5.4402 5.4235 19 6 -0.6723 6.0978 6.5762 20 6 0.4087 6.3752 7.5994 21 6 -0.7078 6.5245 8.6402 22 6 -1.6114 6.8970 7.4546 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.0488 3.4033 -0.7829 29 1 3.1617 2.7641 1.0860 30 1 2.7254 1.2833 1.9722 31 1 0.3541 2.0068 2.0139 32 1 0.7902 3.4876 1.1278 33 1 2.3016 4.1506 2.9779 34 1 1.8659 2.6701 3.8647 35 1 -0.5099 4.0592 3.2293 36 1 -1.6991 5.4043 4.8921 37 1 1.0630 5.5231 7.7838 38 1 0.9577 7.2983 7.4138 39 1 -0.5490 7.3396 9.3462 40 1 -0.9813 5.5870 9.1243 41 1 -1.6169 7.9635 7.2293 42 1 -2.6134 6.4729 7.5203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266032760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:22 Heat of formation + Delta-G solvation = 10.216374 kcal Electronic energy + Delta-G solvation = -19825.634881 eV Core-core repulsion = 16807.092879 eV Total energy + Delta-G solvation = -3018.542002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.72445 -38.37097 -36.38358 -34.64738 -31.84933 -31.64123 -30.47448 -28.45211 -25.97709 -25.41811 -23.89964 -22.88432 -21.01161 -20.66401 -20.01249 -18.23162 -16.84270 -16.65548 -15.85720 -15.66662 -15.26152 -14.81444 -14.44839 -13.99732 -13.93364 -13.43162 -13.29837 -12.67238 -12.55708 -12.34948 -12.16205 -11.90585 -11.56688 -11.38452 -11.21846 -11.11265 -10.99562 -10.72966 -10.69928 -10.51882 -10.46370 -10.02416 -9.70248 -9.52568 -9.48897 -9.32945 -8.69823 -8.44977 -6.54350 -5.76558 -3.35876 1.32759 3.36152 3.40323 3.43976 3.45112 3.45820 4.24420 4.32299 4.49176 4.55221 4.87816 5.10549 5.27903 5.30199 5.40476 5.42406 5.48090 5.57855 5.70842 5.78021 5.89803 6.00449 6.01570 6.10703 6.12890 6.32486 6.38152 6.46378 6.49806 6.53453 6.61972 6.78559 6.85396 6.93053 7.12358 7.20162 7.70555 7.78912 7.83920 8.46751 8.54594 9.21827 9.84235 10.43264 11.22890 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.003596 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.815098 B = 7783.786004 C = 8386.318068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.121 3.879 15 N -0.722 5.722 16 C 0.543 3.457 17 O -0.547 6.547 18 C -0.195 4.195 19 C -0.069 4.069 20 C -0.105 4.105 21 C -0.143 4.143 22 C -0.108 4.108 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.033 0.967 28 H 0.255 0.745 29 H 0.095 0.905 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.399 0.601 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.861 5.355 13.991 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.002 4.002 15 N -0.372 5.372 16 C 0.332 3.668 17 O -0.427 6.427 18 C -0.216 4.216 19 C -0.071 4.071 20 C -0.142 4.142 21 C -0.180 4.180 22 C -0.145 4.145 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.882 5.428 14.372 18.827 hybrid contribution -0.631 0.711 -1.022 1.396 sum -11.513 6.139 13.350 18.667 Atomic orbital electron populations 1.22369 1.00197 0.98865 1.01101 1.20846 0.91661 0.87418 0.98703 1.43744 1.76079 1.08181 1.02507 1.18935 1.04646 1.21332 0.94186 0.92398 1.25188 0.94205 1.01291 0.98073 1.69993 1.03171 1.37285 1.42381 0.86487 0.76921 0.82404 0.81654 1.20937 1.21596 1.20740 1.20793 0.94463 0.96627 0.85718 1.22534 1.02321 0.99864 0.93971 1.21461 0.87156 0.96064 0.95544 1.46074 1.14464 1.53671 1.23009 1.18434 0.88486 0.78912 0.81018 1.90762 1.30256 1.61775 1.59900 1.21677 0.98841 1.04542 0.96496 1.23423 0.99032 0.92879 0.91740 1.22203 0.96229 1.03213 0.92566 1.22726 0.97110 1.02148 0.96032 1.22336 0.97975 1.00042 0.94134 0.93811 0.93279 0.94648 0.93904 0.94849 0.93457 0.88761 0.95706 0.93091 0.91741 0.91577 0.92078 0.76767 0.85138 0.89496 0.88522 0.90500 0.89801 0.88242 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 10.21 37.15 0.38 -2.60 16 2 C 0.14 2.96 6.44 -4.04 -0.03 2.94 16 3 N -0.58 -14.36 2.43 -173.24 -0.42 -14.78 16 4 C -0.26 -7.05 9.45 -15.06 -0.14 -7.19 16 5 H 0.06 1.57 7.92 -52.49 -0.42 1.15 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.45 11.47 55.49 0.64 -24.81 16 8 Si 0.90 21.47 29.60 -169.99 -5.03 16.44 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.15 3.46 5.33 -4.04 -0.02 3.44 16 13 C -0.15 -2.76 5.65 -26.73 -0.15 -2.91 16 14 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 15 N -0.72 -10.69 5.55 -61.49 -0.34 -11.03 16 16 C 0.54 8.46 7.76 -12.67 -0.10 8.36 16 17 O -0.55 -10.43 15.15 5.26 0.08 -10.35 16 18 C -0.19 -2.32 10.03 -37.81 -0.38 -2.70 16 19 C -0.07 -0.76 6.93 -100.48 -0.70 -1.45 16 20 C -0.11 -1.13 6.99 -27.56 -0.19 -1.32 16 21 C -0.14 -1.11 8.17 -26.21 -0.21 -1.32 16 22 C -0.11 -0.83 7.95 -27.42 -0.22 -1.04 16 23 H 0.04 0.76 6.64 -51.93 -0.34 0.42 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 27 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.09 2.47 5.52 -51.93 -0.29 2.19 16 30 H 0.02 0.55 7.86 -51.93 -0.41 0.14 16 31 H 0.05 0.90 6.64 -51.93 -0.34 0.56 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.40 4.83 8.46 -40.82 -0.35 4.48 16 36 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.09 1.10 7.49 -51.93 -0.39 0.72 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -31.00 345.30 -8.89 -39.89 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.15 Total: 2.89 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.87 Total: -3.44 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.13 Total: -50.62 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.00 -8.89 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266032760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.109 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds