Wall clock time and date at job start Mon Mar 30 2020 00:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46507 * 109.47188 * 2 1 4 4 C 1.36937 * 120.00010 * 275.31205 * 3 2 1 5 5 H 1.07995 * 119.99739 * 37.58054 * 4 3 2 6 6 C 1.38813 * 119.99693 * 217.57707 * 4 3 2 7 7 N 1.31621 * 120.00190 * 21.42603 * 6 4 3 8 8 Si 1.86796 * 119.99929 * 201.42424 * 6 4 3 9 9 H 1.48503 * 109.47130 * 59.99839 * 8 6 4 10 10 H 1.48496 * 109.47659 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47210 * 300.00083 * 8 6 4 12 12 C 1.46501 * 119.99817 * 95.31027 * 3 2 1 13 13 C 1.52995 * 109.47196 * 270.00360 * 12 3 2 14 14 C 1.53004 * 109.47447 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.47198 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99575 * 179.72516 * 15 14 13 17 17 O 1.21617 * 120.00219 * 0.02562 * 16 15 14 18 18 C 1.47096 * 119.99859 * 180.02562 * 16 15 14 19 19 C 1.32991 * 120.00393 * 179.97438 * 18 16 15 20 20 C 1.51408 * 136.31422 * 359.62993 * 19 18 16 21 21 C 1.53372 * 87.52014 * 206.05688 * 20 19 18 22 22 C 1.51402 * 136.32085 * 180.02562 * 19 18 16 23 23 H 1.09003 * 109.47150 * 299.99909 * 1 2 3 24 24 H 1.08997 * 109.47542 * 59.99642 * 1 2 3 25 25 H 1.09001 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47218 * 240.00634 * 2 1 3 27 27 H 1.09004 * 109.47665 * 120.00005 * 2 1 3 28 28 H 0.97004 * 119.99826 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47214 * 149.99828 * 12 3 2 30 30 H 1.09004 * 109.47208 * 29.99843 * 12 3 2 31 31 H 1.09001 * 109.47473 * 59.99627 * 13 12 3 32 32 H 1.09006 * 109.47129 * 299.99959 * 13 12 3 33 33 H 1.09005 * 109.46602 * 59.99926 * 14 13 12 34 34 H 1.08998 * 109.47161 * 300.00231 * 14 13 12 35 35 H 0.96994 * 120.00270 * 0.02562 * 15 14 13 36 36 H 1.08005 * 120.00254 * 359.97438 * 18 16 15 37 37 H 1.09007 * 113.55918 * 320.63887 * 20 19 18 38 38 H 1.09001 * 113.56447 * 91.36929 * 20 19 18 39 39 H 1.08997 * 113.96982 * 220.28864 * 21 20 19 40 40 H 1.09000 * 113.60003 * 88.79311 * 21 20 19 41 41 H 1.09000 * 113.56141 * 268.62759 * 22 19 18 42 42 H 1.09005 * 113.56377 * 39.35719 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9626 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6584 9 1 1.9626 5.1786 -2.3343 10 1 4.3621 5.0608 -2.6669 11 1 2.8844 3.6726 -3.9966 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 6 1.5133 3.4191 3.1557 15 7 0.3350 4.0951 3.7044 16 6 0.4236 4.7619 4.8723 17 8 1.4818 4.8028 5.4704 18 6 -0.7595 5.4402 5.4235 19 6 -0.6723 6.0978 6.5762 20 6 0.4087 6.3752 7.5994 21 6 -0.7078 6.5245 8.6402 22 6 -1.6114 6.8970 7.4546 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.0488 3.4033 -0.7829 29 1 3.1617 2.7641 1.0860 30 1 2.7254 1.2833 1.9722 31 1 0.3541 2.0068 2.0139 32 1 0.7902 3.4876 1.1278 33 1 2.3016 4.1506 2.9779 34 1 1.8659 2.6701 3.8647 35 1 -0.5099 4.0592 3.2293 36 1 -1.6991 5.4043 4.8921 37 1 1.0630 5.5231 7.7838 38 1 0.9577 7.2983 7.4138 39 1 -0.5490 7.3396 9.3462 40 1 -0.9813 5.5870 9.1243 41 1 -1.6169 7.9635 7.2293 42 1 -2.6134 6.4729 7.5203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266032760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:22 Heat of formation + Delta-G solvation = -8.094909 kcal Electronic energy + Delta-G solvation = -19826.428918 eV Core-core repulsion = 16807.092879 eV Total energy + Delta-G solvation = -3019.336039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84456 -39.27889 -38.14950 -36.11557 -33.81820 -32.99775 -31.61735 -30.14561 -27.16576 -26.66442 -25.48760 -23.93756 -22.55164 -22.08676 -21.53874 -19.18869 -18.62124 -17.90489 -17.07388 -16.90063 -16.57315 -16.28131 -15.69856 -15.67891 -15.26318 -14.88395 -14.80910 -14.22900 -14.05839 -13.34233 -13.25860 -13.18063 -12.93253 -12.73962 -12.72596 -12.63334 -12.55233 -12.35234 -12.15004 -11.93603 -11.90617 -11.51003 -11.44559 -11.24429 -10.71469 -10.48887 -10.32445 -9.92227 -8.54752 -7.80800 -5.45168 0.37972 1.45826 1.48484 1.54872 2.22422 2.31789 2.51546 3.24198 3.41896 3.59253 3.67193 3.83484 4.14764 4.16694 4.26613 4.34164 4.44949 4.53979 4.61515 4.72867 4.74506 4.76921 4.85345 4.88785 4.94466 5.00794 5.03821 5.04756 5.15846 5.26033 5.33529 5.35960 5.44466 5.47813 5.60590 5.67337 5.69619 5.83754 6.48154 6.63370 7.18846 7.28381 7.88786 8.41539 9.13887 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.003596 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.815098 B = 7783.786004 C = 8386.318068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.265 4.265 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.274 1.274 12 C 0.151 3.849 13 C -0.122 4.122 14 C 0.134 3.866 15 N -0.713 5.713 16 C 0.536 3.464 17 O -0.592 6.592 18 C -0.210 4.210 19 C -0.072 4.072 20 C -0.123 4.123 21 C -0.132 4.132 22 C -0.093 4.093 23 H 0.050 0.950 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.029 0.971 27 H 0.044 0.956 28 H 0.251 0.749 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.414 0.586 36 H 0.163 0.837 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 6.021 14.738 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.396 4.396 5 H 0.073 0.927 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.200 1.200 12 C 0.024 3.976 13 C -0.162 4.162 14 C 0.009 3.991 15 N -0.364 5.364 16 C 0.327 3.673 17 O -0.475 6.475 18 C -0.230 4.230 19 C -0.074 4.074 20 C -0.159 4.159 21 C -0.169 4.169 22 C -0.130 4.130 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.251 0.749 36 H 0.181 0.819 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.867 6.077 15.108 21.389 hybrid contribution 0.326 0.437 -1.186 1.306 sum -13.541 6.515 13.922 20.485 Atomic orbital electron populations 1.22167 0.97196 1.00805 1.00847 1.21004 0.93903 0.85671 0.98602 1.43993 1.76498 1.09590 1.02265 1.19156 1.04136 1.21398 0.94880 0.92652 1.25874 0.93976 1.03356 1.00204 1.70132 1.03781 1.38081 1.44249 0.85540 0.76555 0.79846 0.79727 1.20347 1.22152 1.19969 1.20687 0.95279 0.96061 0.85552 1.22162 1.00682 0.99509 0.93844 1.21101 0.87662 0.95385 0.94904 1.45893 1.14223 1.53248 1.23061 1.19140 0.89186 0.78409 0.80570 1.90742 1.32281 1.63409 1.61078 1.21693 0.98407 1.05427 0.97480 1.23958 1.00423 0.91860 0.91145 1.22355 0.96842 1.02157 0.94588 1.22717 0.95168 1.03075 0.95946 1.22379 0.98072 1.00494 0.92016 0.93061 0.94439 0.91603 0.95235 0.93776 0.94025 0.92298 0.95509 0.91111 0.92960 0.94057 0.92447 0.74916 0.81911 0.92471 0.88345 0.88488 0.89595 0.86393 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 10.21 71.98 0.73 -4.33 16 2 C 0.13 5.53 6.44 86.38 0.56 6.08 16 3 N -0.60 -29.63 2.43 -702.00 -1.71 -31.34 16 4 C -0.27 -14.40 9.45 84.03 0.79 -13.61 16 5 H 0.06 2.99 7.92 -2.91 -0.02 2.97 16 6 C -0.04 -2.04 4.95 84.86 0.42 -1.62 16 7 N -0.92 -54.24 11.47 21.65 0.25 -53.99 16 8 Si 0.96 44.60 29.60 68.60 2.03 46.64 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.15 7.03 5.33 86.38 0.46 7.49 16 13 C -0.12 -4.54 5.65 30.59 0.17 -4.37 16 14 C 0.13 4.73 5.67 86.38 0.49 5.22 16 15 N -0.71 -20.65 5.55 -466.70 -2.59 -23.24 16 16 C 0.54 16.62 7.76 86.57 0.67 17.29 16 17 O -0.59 -23.33 15.15 -4.09 -0.06 -23.39 16 18 C -0.21 -4.64 10.03 23.43 0.23 -4.40 16 19 C -0.07 -1.45 6.93 -17.17 -0.12 -1.57 16 20 C -0.12 -2.56 6.99 30.06 0.21 -2.35 16 21 C -0.13 -1.71 8.17 30.93 0.25 -1.46 16 22 C -0.09 -1.09 7.95 30.15 0.24 -0.85 16 23 H 0.05 1.63 6.64 -2.39 -0.02 1.62 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 27 H 0.04 1.71 7.83 -2.38 -0.02 1.69 16 28 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.06 3.21 5.52 -2.39 -0.01 3.20 16 30 H 0.03 1.20 7.86 -2.38 -0.02 1.18 16 31 H 0.07 2.37 6.64 -2.39 -0.02 2.35 16 32 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.41 9.31 8.46 -92.71 -0.78 8.52 16 36 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.06 1.52 7.49 -2.38 -0.02 1.51 16 38 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.12 1.03 8.14 -2.39 -0.02 1.02 16 42 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -68.88 345.30 3.24 -65.64 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.21 Total: 18.16 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.12 Total: 1.52 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -4.05 Total: -108.57 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.88 3.24 -65.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266032760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.547 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds