Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36943 * 119.99869 * 2 1 4 4 H 1.07996 * 119.99666 * 202.34989 * 3 2 1 5 5 C 1.38810 * 120.00027 * 22.34339 * 3 2 1 6 6 N 1.31618 * 120.00183 * 11.35021 * 5 3 2 7 7 Si 1.86799 * 119.99912 * 191.34334 * 5 3 2 8 8 H 1.48507 * 109.47005 * 90.00600 * 7 5 3 9 9 H 1.48503 * 109.46902 * 210.00350 * 7 5 3 10 10 H 1.48497 * 109.47503 * 330.00517 * 7 5 3 11 11 C 1.46494 * 120.00182 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47335 * 269.99863 * 11 2 1 13 13 N 1.46504 * 109.47347 * 179.97438 * 12 11 2 14 14 C 1.34765 * 120.00008 * 179.97438 * 13 12 11 15 15 O 1.21621 * 120.00442 * 0.02562 * 14 13 12 16 16 C 1.47105 * 119.99882 * 179.97438 * 14 13 12 17 17 C 1.31560 * 119.85255 * 179.97438 * 16 14 13 18 18 C 1.51412 * 120.29186 * 179.97438 * 17 16 14 19 19 C 1.53034 * 108.57650 * 71.58839 * 18 17 16 20 20 C 1.51785 * 110.80694 * 274.28917 * 19 18 17 21 21 C 1.51780 * 113.84304 * 66.93933 * 20 19 18 22 22 C 1.51406 * 119.85324 * 359.97438 * 16 14 13 23 23 H 1.09004 * 109.46508 * 274.20936 * 1 2 3 24 24 H 1.09004 * 109.46910 * 34.20846 * 1 2 3 25 25 H 1.08991 * 109.46989 * 154.21077 * 1 2 3 26 26 H 0.96999 * 120.00375 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.47406 * 149.99558 * 11 2 1 28 28 H 1.08999 * 109.47126 * 30.00219 * 11 2 1 29 29 H 1.08995 * 109.46933 * 60.00180 * 12 11 2 30 30 H 1.08999 * 109.47305 * 300.00247 * 12 11 2 31 31 H 0.97007 * 119.99572 * 359.97438 * 13 12 11 32 32 H 1.08003 * 119.85440 * 0.26167 * 17 16 14 33 33 H 1.09005 * 109.61773 * 191.31683 * 18 17 16 34 34 H 1.09002 * 109.61908 * 311.67084 * 18 17 16 35 35 H 1.09003 * 109.20949 * 34.62763 * 19 18 17 36 36 H 1.08994 * 109.21136 * 153.99369 * 19 18 17 37 37 H 1.08995 * 108.60881 * 188.06984 * 20 19 18 38 38 H 1.08997 * 108.60897 * 305.95355 * 20 19 18 39 39 H 1.08997 * 109.20918 * 53.39690 * 21 20 19 40 40 H 1.08999 * 109.21044 * 172.76109 * 21 20 19 41 41 H 1.09000 * 109.62027 * 348.70264 * 22 16 14 42 42 H 1.08998 * 109.61903 * 228.15032 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5338 2.3430 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3367 4.0048 0.1687 8 1 1.8678 4.5633 -1.1250 9 1 1.9681 4.9303 1.2700 10 1 3.8123 3.8420 0.1318 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 7 3.1846 -2.9787 1.4438 14 6 3.5219 -3.5615 2.6111 15 8 3.2183 -3.0343 3.6642 16 6 4.2565 -4.8361 2.6117 17 6 4.5848 -5.4022 3.7530 18 6 5.3403 -6.7143 3.7651 19 6 6.7775 -6.4536 3.3085 20 6 6.8775 -6.4922 1.7945 21 6 6.1427 -5.3589 1.1019 22 6 4.6313 -5.4905 1.2988 23 1 -0.3632 0.0754 1.0250 24 1 -0.3633 0.8499 -0.5778 25 1 -0.3633 -0.9252 -0.4471 26 1 -0.0461 3.0776 1.4133 27 1 3.1499 -1.1386 -0.5134 28 1 1.6085 -2.0285 -0.5130 29 1 1.5002 -1.8399 1.9571 30 1 3.0416 -0.9498 1.9567 31 1 3.4265 -3.3995 0.6038 32 1 4.3101 -4.9314 4.6853 33 1 5.3458 -7.1241 4.7752 34 1 4.8600 -7.4195 3.0868 35 1 7.0944 -5.4732 3.6640 36 1 7.4317 -7.2167 3.7300 37 1 7.9299 -6.4470 1.5142 38 1 6.4652 -7.4378 1.4426 39 1 6.4768 -4.4082 1.5172 40 1 6.3684 -5.3837 0.0359 41 1 4.1111 -4.9931 0.4803 42 1 4.3563 -6.5449 1.3238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266270413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = -16.664754 kcal Electronic energy + Delta-G solvation = -20279.118261 eV Core-core repulsion = 17259.410605 eV Total energy + Delta-G solvation = -3019.707656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90072 -37.96292 -36.01188 -34.17011 -32.70237 -32.16924 -31.17525 -28.14441 -25.92384 -25.76963 -24.54781 -23.08859 -21.09488 -20.61033 -20.49563 -18.15247 -17.24235 -16.72390 -15.93408 -15.05398 -14.96756 -14.81337 -14.62332 -14.00077 -13.86847 -13.63239 -13.37185 -13.17249 -13.03604 -12.36958 -12.23608 -12.15219 -11.82944 -11.31778 -11.17785 -10.94371 -10.88994 -10.86413 -10.83201 -10.66050 -10.57323 -10.26061 -9.97682 -9.88908 -9.52044 -9.12702 -8.58104 -8.51095 -6.80957 -5.73055 -3.20467 1.50347 3.38857 3.44856 3.47058 3.54212 3.57452 4.42859 4.51024 4.60764 4.62416 4.81925 4.84478 5.03098 5.15820 5.28173 5.40188 5.42697 5.49877 5.53624 5.64108 5.67206 5.81834 5.87183 5.89433 5.90921 5.95893 6.01764 6.14785 6.29569 6.41670 6.56134 6.72150 6.75233 6.78309 7.03143 7.38005 7.73243 7.81357 7.90246 8.38348 8.59278 9.22362 9.84345 10.32557 11.32028 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031502 B = 0.003592 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.613029 B = 7792.769538 C = 7908.524958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.720 5.720 14 C 0.543 3.457 15 O -0.548 6.548 16 C -0.174 4.174 17 C -0.080 4.080 18 C -0.094 4.094 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.081 4.081 23 H 0.029 0.971 24 H 0.047 0.953 25 H -0.002 1.002 26 H 0.253 0.747 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.394 0.606 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 -19.768 -0.091 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.371 5.371 14 C 0.331 3.669 15 O -0.427 6.427 16 C -0.177 4.177 17 C -0.100 4.100 18 C -0.132 4.132 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.118 4.118 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.016 0.984 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.274 -19.184 0.678 21.772 hybrid contribution 0.402 0.867 -0.301 1.002 sum 10.675 -18.316 0.377 21.203 Atomic orbital electron populations 1.20850 0.82154 0.95737 0.99485 1.43927 1.02068 1.00343 1.85579 1.19240 0.98167 0.85236 1.36364 0.91190 1.25069 0.97667 0.98684 0.98085 1.70069 1.17810 1.27219 1.39952 0.86209 0.78841 0.83884 0.77319 1.21429 1.21667 1.20446 1.20988 0.96311 0.88919 0.92209 1.22514 0.95746 0.82869 1.02045 1.46177 1.57919 1.25108 1.07934 1.18440 0.79474 0.84868 0.84159 1.90790 1.55391 1.65187 1.31363 1.21315 1.03302 0.96605 0.96490 1.23292 0.93245 0.95290 0.98169 1.20935 0.95185 0.94856 1.02190 1.21266 0.95640 1.02395 0.95924 1.21135 1.00433 0.98860 0.95136 1.21301 0.94203 0.99412 1.00537 1.20764 0.96254 1.00672 0.94144 0.95232 0.93407 0.98388 0.93631 0.93362 0.94022 0.92214 0.91336 0.77084 0.85749 0.90913 0.90459 0.91586 0.91601 0.92206 0.92216 0.91554 0.91394 0.91189 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 9.01 59.85 0.54 4.60 16 2 N -0.60 -15.16 2.93 -181.12 -0.53 -15.69 16 3 C -0.26 -7.23 9.67 -15.06 -0.15 -7.38 16 4 H 0.07 1.89 7.84 -52.49 -0.41 1.48 16 5 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 6 N -0.91 -26.83 10.59 55.49 0.59 -26.24 16 7 Si 0.91 22.13 29.57 -169.99 -5.03 17.10 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.14 2.91 5.82 -4.05 -0.02 2.89 16 12 C 0.09 1.91 6.00 -4.04 -0.02 1.88 16 13 N -0.72 -11.60 5.51 -61.49 -0.34 -11.94 16 14 C 0.54 9.28 7.75 -12.67 -0.10 9.18 16 15 O -0.55 -11.85 16.18 5.26 0.09 -11.76 16 16 C -0.17 -2.18 5.10 -102.53 -0.52 -2.70 16 17 C -0.08 -0.92 8.92 -35.81 -0.32 -1.24 16 18 C -0.09 -0.76 5.61 -27.52 -0.15 -0.91 16 19 C -0.11 -0.86 5.66 -27.33 -0.15 -1.01 16 20 C -0.12 -0.84 5.27 -27.97 -0.15 -0.98 16 21 C -0.12 -0.97 5.66 -27.36 -0.15 -1.13 16 22 C -0.08 -0.74 5.37 -27.55 -0.15 -0.89 16 23 H 0.03 0.80 7.42 -51.93 -0.39 0.42 16 24 H 0.05 1.27 7.19 -51.93 -0.37 0.90 16 25 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 26 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 27 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 28 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.39 5.00 6.25 -40.82 -0.26 4.74 16 32 H 0.12 1.62 7.44 -52.48 -0.39 1.23 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.56 6.76 -51.93 -0.35 0.21 16 35 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 39 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.60 5.99 -51.93 -0.31 0.29 16 42 H 0.08 0.61 6.74 -51.93 -0.35 0.26 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -32.70 331.19 -8.63 -41.33 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.96 Total: -0.11 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.44 Total: 2.32 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.28 Total: -53.87 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.70 -8.63 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266270413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.667 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds