Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36943 * 119.99869 * 2 1 4 4 H 1.07996 * 119.99666 * 202.34989 * 3 2 1 5 5 C 1.38810 * 120.00027 * 22.34339 * 3 2 1 6 6 N 1.31618 * 120.00183 * 11.35021 * 5 3 2 7 7 Si 1.86799 * 119.99912 * 191.34334 * 5 3 2 8 8 H 1.48507 * 109.47005 * 90.00600 * 7 5 3 9 9 H 1.48503 * 109.46902 * 210.00350 * 7 5 3 10 10 H 1.48497 * 109.47503 * 330.00517 * 7 5 3 11 11 C 1.46494 * 120.00182 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47335 * 269.99863 * 11 2 1 13 13 N 1.46504 * 109.47347 * 179.97438 * 12 11 2 14 14 C 1.34765 * 120.00008 * 179.97438 * 13 12 11 15 15 O 1.21621 * 120.00442 * 0.02562 * 14 13 12 16 16 C 1.47105 * 119.99882 * 179.97438 * 14 13 12 17 17 C 1.31560 * 119.85255 * 179.97438 * 16 14 13 18 18 C 1.51412 * 120.29186 * 179.97438 * 17 16 14 19 19 C 1.53034 * 108.57650 * 71.58839 * 18 17 16 20 20 C 1.51785 * 110.80694 * 274.28917 * 19 18 17 21 21 C 1.51780 * 113.84304 * 66.93933 * 20 19 18 22 22 C 1.51406 * 119.85324 * 359.97438 * 16 14 13 23 23 H 1.09004 * 109.46508 * 274.20936 * 1 2 3 24 24 H 1.09004 * 109.46910 * 34.20846 * 1 2 3 25 25 H 1.08991 * 109.46989 * 154.21077 * 1 2 3 26 26 H 0.96999 * 120.00375 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.47406 * 149.99558 * 11 2 1 28 28 H 1.08999 * 109.47126 * 30.00219 * 11 2 1 29 29 H 1.08995 * 109.46933 * 60.00180 * 12 11 2 30 30 H 1.08999 * 109.47305 * 300.00247 * 12 11 2 31 31 H 0.97007 * 119.99572 * 359.97438 * 13 12 11 32 32 H 1.08003 * 119.85440 * 0.26167 * 17 16 14 33 33 H 1.09005 * 109.61773 * 191.31683 * 18 17 16 34 34 H 1.09002 * 109.61908 * 311.67084 * 18 17 16 35 35 H 1.09003 * 109.20949 * 34.62763 * 19 18 17 36 36 H 1.08994 * 109.21136 * 153.99369 * 19 18 17 37 37 H 1.08995 * 108.60881 * 188.06984 * 20 19 18 38 38 H 1.08997 * 108.60897 * 305.95355 * 20 19 18 39 39 H 1.08997 * 109.20918 * 53.39690 * 21 20 19 40 40 H 1.08999 * 109.21044 * 172.76109 * 21 20 19 41 41 H 1.09000 * 109.62027 * 348.70264 * 22 16 14 42 42 H 1.08998 * 109.61903 * 228.15032 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5338 2.3430 0.4570 6 7 0.3842 2.2691 1.0936 7 14 2.3367 4.0048 0.1687 8 1 1.8678 4.5633 -1.1250 9 1 1.9681 4.9303 1.2700 10 1 3.8123 3.8420 0.1318 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 7 3.1846 -2.9787 1.4438 14 6 3.5219 -3.5615 2.6111 15 8 3.2183 -3.0343 3.6642 16 6 4.2565 -4.8361 2.6117 17 6 4.5848 -5.4022 3.7530 18 6 5.3403 -6.7143 3.7651 19 6 6.7775 -6.4536 3.3085 20 6 6.8775 -6.4922 1.7945 21 6 6.1427 -5.3589 1.1019 22 6 4.6313 -5.4905 1.2988 23 1 -0.3632 0.0754 1.0250 24 1 -0.3633 0.8499 -0.5778 25 1 -0.3633 -0.9252 -0.4471 26 1 -0.0461 3.0776 1.4133 27 1 3.1499 -1.1386 -0.5134 28 1 1.6085 -2.0285 -0.5130 29 1 1.5002 -1.8399 1.9571 30 1 3.0416 -0.9498 1.9567 31 1 3.4265 -3.3995 0.6038 32 1 4.3101 -4.9314 4.6853 33 1 5.3458 -7.1241 4.7752 34 1 4.8600 -7.4195 3.0868 35 1 7.0944 -5.4732 3.6640 36 1 7.4317 -7.2167 3.7300 37 1 7.9299 -6.4470 1.5142 38 1 6.4652 -7.4378 1.4426 39 1 6.4768 -4.4082 1.5172 40 1 6.3684 -5.3837 0.0359 41 1 4.1111 -4.9931 0.4803 42 1 4.3563 -6.5449 1.3238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266270413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = -37.517232 kcal Electronic energy + Delta-G solvation = -20280.022492 eV Core-core repulsion = 17259.410605 eV Total energy + Delta-G solvation = -3020.611887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12872 -38.92449 -37.85070 -35.82583 -33.67371 -33.25562 -32.70585 -29.83670 -27.95350 -26.68127 -25.65810 -24.51067 -22.43949 -22.30934 -21.18265 -19.39018 -18.76338 -18.18409 -17.27685 -16.74893 -16.49063 -15.85902 -15.75013 -15.47079 -15.22285 -14.86797 -14.50460 -14.32227 -14.23154 -13.99770 -13.74724 -13.14260 -12.92622 -12.82367 -12.68875 -12.54033 -12.47999 -12.12530 -12.08249 -12.01688 -11.78948 -11.58048 -11.49499 -11.29629 -10.89601 -10.68218 -10.23834 -9.88149 -8.89022 -7.86855 -5.36956 0.43665 1.45489 1.46627 1.55617 2.17929 2.27935 2.51185 3.28520 3.61903 3.74872 3.84685 4.01275 4.11339 4.14012 4.19800 4.24882 4.31495 4.49295 4.60311 4.62999 4.79490 4.82639 4.85387 4.89205 4.99708 5.02432 5.11634 5.26238 5.29334 5.30193 5.31678 5.36076 5.42834 5.53352 5.57259 5.60701 5.69114 5.70088 6.28865 6.59246 7.10562 7.25188 7.81046 8.23558 9.16941 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031502 B = 0.003592 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.613029 B = 7792.769538 C = 7908.524958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.615 5.615 3 C -0.269 4.269 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.148 3.852 12 C 0.114 3.886 13 N -0.704 5.704 14 C 0.536 3.464 15 O -0.604 6.604 16 C -0.186 4.186 17 C -0.070 4.070 18 C -0.088 4.088 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.075 4.075 23 H -0.003 1.003 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.248 0.752 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.415 0.585 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.433 -22.298 -1.773 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.337 5.337 3 C -0.399 4.399 4 H 0.094 0.906 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.207 1.207 9 H -0.224 1.224 10 H -0.192 1.192 11 C 0.020 3.980 12 C -0.013 4.013 13 N -0.357 5.357 14 C 0.326 3.674 15 O -0.488 6.488 16 C -0.189 4.189 17 C -0.090 4.090 18 C -0.125 4.125 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.112 4.112 23 H 0.016 0.984 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.254 0.746 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.107 -21.767 -1.056 24.930 hybrid contribution -0.127 1.568 0.281 1.598 sum 11.980 -20.199 -0.775 23.497 Atomic orbital electron populations 1.20611 0.82393 0.96567 0.97470 1.44182 1.02394 1.01567 1.85603 1.19626 0.98445 0.86412 1.35428 0.90562 1.25883 0.98427 1.02229 0.98416 1.70253 1.19329 1.27602 1.41438 0.85189 0.78424 0.79451 0.76912 1.20712 1.22428 1.19248 1.21132 0.97196 0.87678 0.91949 1.21950 0.94104 0.83762 1.01455 1.45888 1.57167 1.23618 1.09040 1.19284 0.78836 0.86064 0.83237 1.90760 1.57689 1.67016 1.33292 1.21267 1.03943 0.94807 0.98848 1.23544 0.92122 0.96533 0.96841 1.21016 0.95060 0.92761 1.03686 1.21279 0.95279 1.02042 0.96560 1.21148 1.00891 0.99027 0.94490 1.21316 0.93588 0.98904 1.01604 1.20830 0.96897 1.01546 0.91913 0.98422 0.95803 0.94513 0.94251 0.91654 0.90586 0.94939 0.95387 0.74625 0.88251 0.89633 0.88540 0.93470 0.89608 0.91461 0.90435 0.93818 0.89765 0.90601 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.80 9.01 127.77 1.15 9.95 16 2 N -0.61 -31.17 2.93 -726.95 -2.13 -33.30 16 3 C -0.27 -14.98 9.67 84.03 0.81 -14.16 16 4 H 0.08 4.06 7.84 -2.91 -0.02 4.04 16 5 C -0.05 -3.13 5.13 84.86 0.44 -2.69 16 6 N -0.94 -57.34 10.59 21.65 0.23 -57.11 16 7 Si 0.97 45.99 29.57 68.60 2.03 48.02 16 8 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 9 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 C 0.15 5.76 5.82 86.38 0.50 6.27 16 12 C 0.11 4.73 6.00 86.38 0.52 5.25 16 13 N -0.70 -22.41 5.51 -466.72 -2.57 -24.99 16 14 C 0.54 18.59 7.75 86.57 0.67 19.26 16 15 O -0.60 -27.51 16.18 -4.10 -0.07 -27.57 16 16 C -0.19 -4.47 5.10 -17.88 -0.09 -4.56 16 17 C -0.07 -1.56 8.92 25.34 0.23 -1.34 16 18 C -0.09 -1.17 5.61 30.09 0.17 -1.00 16 19 C -0.11 -1.38 5.66 30.21 0.17 -1.21 16 20 C -0.12 -1.25 5.27 29.79 0.16 -1.09 16 21 C -0.12 -1.60 5.66 30.19 0.17 -1.43 16 22 C -0.07 -1.15 5.37 30.07 0.16 -0.98 16 23 H 0.00 -0.15 7.42 -2.39 -0.02 -0.16 16 24 H 0.02 1.28 7.19 -2.38 -0.02 1.26 16 25 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.07 2.35 8.03 -2.39 -0.02 2.33 16 28 H 0.08 2.48 7.86 -2.39 -0.02 2.46 16 29 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.41 9.66 6.25 -92.70 -0.58 9.08 16 32 H 0.10 2.70 7.44 -2.91 -0.02 2.68 16 33 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.10 0.98 6.76 -2.39 -0.02 0.97 16 35 H 0.05 0.75 7.85 -2.39 -0.02 0.73 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.59 7.87 -2.39 -0.02 0.57 16 39 H 0.04 0.80 7.85 -2.39 -0.02 0.78 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.05 5.99 -2.39 -0.01 1.04 16 42 H 0.10 1.13 6.74 -2.39 -0.02 1.12 16 Total: -1.00 -74.37 331.19 2.96 -71.40 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.41 Total: 11.27 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.05 Total: 12.28 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -4.47 Total: -115.40 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.07 Total: -27.57 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -74.37 2.96 -71.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266270413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.887 kcal (2) G-P(sol) polarization free energy of solvation -74.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds