Wall clock time and date at job start Mon Mar 30 2020 01:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46492 * 120.00246 * 2 1 4 4 C 1.53003 * 109.47561 * 270.00163 * 3 2 1 5 5 N 1.46495 * 109.47357 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99803 * 180.02562 * 5 4 3 7 7 H 1.07991 * 120.00454 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99918 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99967 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00333 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46776 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47415 * 119.99781 * 10 8 6 13 13 H 1.48509 * 109.47216 * 240.00234 * 10 8 6 14 14 C 1.34775 * 119.99566 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00000 * 180.02562 * 14 2 1 16 16 C 1.50702 * 120.00245 * 0.02562 * 14 2 1 17 17 C 1.52999 * 109.47295 * 180.02562 * 16 14 2 18 18 H 1.08994 * 109.35756 * 55.26943 * 17 16 14 19 19 C 1.50065 * 109.48230 * 295.83059 * 17 16 14 20 20 C 1.29443 * 124.07980 * 223.00478 * 19 17 16 21 21 C 1.50070 * 124.07366 * 359.94620 * 20 19 17 22 22 C 1.53027 * 110.14693 * 343.13269 * 21 20 19 23 23 C 1.53022 * 109.35935 * 175.00086 * 17 16 14 24 24 H 1.08993 * 109.47530 * 270.00280 * 1 2 3 25 25 H 1.09006 * 109.46973 * 30.00130 * 1 2 3 26 26 H 1.09004 * 109.47442 * 149.99653 * 1 2 3 27 27 H 1.09004 * 109.47278 * 30.00115 * 3 2 1 28 28 H 1.09001 * 109.47439 * 149.99758 * 3 2 1 29 29 H 1.09004 * 109.46785 * 300.00253 * 4 3 2 30 30 H 1.09001 * 109.47075 * 59.99372 * 4 3 2 31 31 H 0.96998 * 120.00076 * 359.97438 * 5 4 3 32 32 H 0.97000 * 120.00247 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47465 * 59.99576 * 16 14 2 34 34 H 1.09007 * 109.46629 * 299.99702 * 16 14 2 35 35 H 1.08004 * 117.96441 * 42.76070 * 19 17 16 36 36 H 1.08002 * 117.96781 * 180.23731 * 20 19 17 37 37 H 1.09000 * 109.35664 * 103.33988 * 21 20 19 38 38 H 1.08997 * 109.35897 * 223.06676 * 21 20 19 39 39 H 1.08997 * 109.64512 * 169.11725 * 22 21 20 40 40 H 1.09001 * 109.64525 * 289.54124 * 22 21 20 41 41 H 1.08993 * 109.64759 * 49.95222 * 23 17 16 42 42 H 1.09007 * 109.63952 * 289.31965 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1856 2.9788 -1.4424 6 6 3.5276 3.5719 -2.6283 7 1 3.2573 3.1046 -3.5636 8 6 4.2218 4.7740 -2.6283 9 7 4.5517 5.3435 -1.4884 10 14 4.6890 5.5829 -4.2459 11 1 4.2070 4.7469 -5.3747 12 1 4.0659 6.9285 -4.3247 13 1 6.1660 5.7159 -4.3245 14 6 2.1388 -1.1672 -0.0005 15 8 3.3516 -1.1673 -0.0001 16 6 1.3853 -2.4723 -0.0017 17 6 2.3794 -3.6353 -0.0014 18 1 3.0588 -3.5296 0.8443 19 6 3.1742 -3.6146 -1.2742 20 6 3.4517 -4.6682 -1.9732 21 6 3.0185 -6.0577 -1.6078 22 6 2.5934 -6.1081 -0.1387 23 6 1.6157 -4.9555 0.1232 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 3.0416 0.9507 -1.9564 30 1 1.5002 1.8407 -1.9563 31 1 3.4281 3.3988 -0.6024 32 1 5.0365 6.1836 -1.4883 33 1 0.7589 -2.5295 -0.8919 34 1 0.7583 -2.5306 0.8881 35 1 3.5338 -2.6609 -1.6313 36 1 4.0352 -4.5398 -2.8729 37 1 2.1786 -6.3516 -2.2373 38 1 3.8473 -6.7479 -1.7658 39 1 2.1025 -7.0590 0.0683 40 1 3.4700 -6.0016 0.5004 41 1 0.8107 -4.9838 -0.6110 42 1 1.2028 -5.0464 1.1279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266738773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:16 Heat of formation + Delta-G solvation = -22.402095 kcal Electronic energy + Delta-G solvation = -20179.846003 eV Core-core repulsion = 17159.889557 eV Total energy + Delta-G solvation = -3019.956445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.09971 -38.35355 -35.85407 -34.32492 -32.82828 -31.31995 -31.07484 -28.64649 -27.26850 -26.07590 -23.74656 -22.49567 -22.18157 -21.24137 -18.94147 -18.02607 -17.17972 -16.89763 -16.05554 -15.91456 -15.37489 -14.62318 -14.35509 -14.00989 -13.86799 -13.45613 -13.14825 -13.03298 -12.88137 -12.83665 -12.68579 -12.42727 -12.25504 -12.07080 -11.64675 -11.21859 -11.03002 -10.95861 -10.86155 -10.69242 -10.61692 -10.21203 -10.05006 -9.74677 -9.47108 -8.97755 -8.85434 -8.44739 -6.90628 -5.74015 -3.03107 2.35193 2.80890 3.15200 3.45635 3.51151 3.53604 4.45070 4.57215 4.60993 4.64056 4.79167 4.99229 5.07520 5.13681 5.26654 5.30743 5.37090 5.44720 5.49218 5.53275 5.55642 5.60615 5.66323 5.72174 5.75353 5.77735 5.87714 5.93624 6.06889 6.16462 6.18953 6.26506 6.59248 6.74950 6.77966 6.94576 7.00789 7.56521 7.72986 8.37053 8.44811 9.55470 10.12017 10.47125 11.49033 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.003603 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.791147 B = 7768.876788 C = 8439.925218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.107 3.893 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.933 5.933 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.508 3.492 15 O -0.530 6.530 16 C -0.131 4.131 17 C -0.044 4.044 18 H 0.087 0.913 19 C -0.133 4.133 20 C -0.174 4.174 21 C -0.089 4.089 22 C -0.120 4.120 23 C -0.115 4.115 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.828 -21.915 4.875 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.348 5.348 3 C -0.016 4.016 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.296 3.704 15 O -0.406 6.406 16 C -0.171 4.171 17 C -0.063 4.063 18 H 0.105 0.895 19 C -0.151 4.151 20 C -0.192 4.192 21 C -0.125 4.125 22 C -0.158 4.158 23 C -0.152 4.152 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.164 -21.877 4.694 24.576 hybrid contribution 0.302 0.853 -0.713 1.152 sum -9.863 -21.024 3.982 23.561 Atomic orbital electron populations 1.21803 0.79828 1.03384 1.01557 1.47863 1.06864 1.06456 1.73644 1.21690 0.97473 0.83335 0.99052 1.20899 0.94990 0.89348 0.93269 1.42224 1.67054 1.21676 1.06589 1.19256 1.29268 1.02299 0.85992 0.91171 1.24753 1.01292 0.98074 0.96945 1.69675 1.45109 1.19552 1.23893 0.86090 0.77935 0.79121 0.82902 1.20555 1.21845 1.21800 1.20669 0.88229 0.85283 0.76256 1.90727 1.13860 1.87173 1.48889 1.21730 0.99085 0.92182 1.04055 1.19847 0.95706 0.92923 0.97787 0.89481 1.22244 0.98074 0.99167 0.95574 1.22006 1.02343 0.94346 1.00512 1.20425 1.00684 0.95175 0.96266 1.21592 0.99431 0.98092 0.96638 1.21663 0.97993 0.93975 1.01608 0.92713 0.90637 0.91246 0.90620 0.89750 0.96017 0.96539 0.78273 0.93543 0.88907 0.88926 0.86824 0.88172 0.91297 0.91494 0.91853 0.91701 0.91615 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.24 59.85 0.61 1.36 16 2 N -0.61 -8.74 2.87 -181.57 -0.52 -9.26 16 3 C 0.11 1.89 5.52 -4.04 -0.02 1.87 16 4 C 0.14 3.12 6.58 -4.04 -0.03 3.09 16 5 N -0.73 -19.52 5.60 -59.91 -0.34 -19.85 16 6 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 7 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 8 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.97 13.06 55.49 0.72 -28.24 16 10 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 C 0.51 7.51 7.31 -10.99 -0.08 7.43 16 15 O -0.53 -10.11 13.81 5.55 0.08 -10.03 16 16 C -0.13 -1.33 3.70 -27.88 -0.10 -1.43 16 17 C -0.04 -0.48 2.11 -92.07 -0.19 -0.67 16 18 H 0.09 1.07 7.96 -51.93 -0.41 0.66 16 19 C -0.13 -1.70 8.41 -35.90 -0.30 -2.01 16 20 C -0.17 -1.97 9.80 -35.90 -0.35 -2.32 16 21 C -0.09 -0.78 6.12 -28.17 -0.17 -0.95 16 22 C -0.12 -0.97 6.01 -26.51 -0.16 -1.13 16 23 C -0.11 -0.94 5.31 -26.51 -0.14 -1.08 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 26 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 27 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.38 10.62 7.67 -40.82 -0.31 10.30 16 32 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.09 0.82 7.40 -51.93 -0.38 0.44 16 34 H 0.09 0.72 8.11 -51.93 -0.42 0.29 16 35 H 0.11 1.80 6.47 -52.48 -0.34 1.46 16 36 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 41 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 42 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -33.99 337.85 -8.37 -42.37 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.20 Total: 5.39 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -1.19 Total: -3.45 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.13 Total: -57.36 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.99 -8.37 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266738773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.963 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds