Wall clock time and date at job start Mon Mar 30 2020 01:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46492 * 120.00246 * 2 1 4 4 C 1.53003 * 109.47561 * 270.00163 * 3 2 1 5 5 N 1.46495 * 109.47357 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99803 * 180.02562 * 5 4 3 7 7 H 1.07991 * 120.00454 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99918 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99967 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00333 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46776 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47415 * 119.99781 * 10 8 6 13 13 H 1.48509 * 109.47216 * 240.00234 * 10 8 6 14 14 C 1.34775 * 119.99566 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00000 * 180.02562 * 14 2 1 16 16 C 1.50702 * 120.00245 * 0.02562 * 14 2 1 17 17 C 1.52999 * 109.47295 * 180.02562 * 16 14 2 18 18 H 1.08994 * 109.35756 * 55.26943 * 17 16 14 19 19 C 1.50065 * 109.48230 * 295.83059 * 17 16 14 20 20 C 1.29443 * 124.07980 * 223.00478 * 19 17 16 21 21 C 1.50070 * 124.07366 * 359.94620 * 20 19 17 22 22 C 1.53027 * 110.14693 * 343.13269 * 21 20 19 23 23 C 1.53022 * 109.35935 * 175.00086 * 17 16 14 24 24 H 1.08993 * 109.47530 * 270.00280 * 1 2 3 25 25 H 1.09006 * 109.46973 * 30.00130 * 1 2 3 26 26 H 1.09004 * 109.47442 * 149.99653 * 1 2 3 27 27 H 1.09004 * 109.47278 * 30.00115 * 3 2 1 28 28 H 1.09001 * 109.47439 * 149.99758 * 3 2 1 29 29 H 1.09004 * 109.46785 * 300.00253 * 4 3 2 30 30 H 1.09001 * 109.47075 * 59.99372 * 4 3 2 31 31 H 0.96998 * 120.00076 * 359.97438 * 5 4 3 32 32 H 0.97000 * 120.00247 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47465 * 59.99576 * 16 14 2 34 34 H 1.09007 * 109.46629 * 299.99702 * 16 14 2 35 35 H 1.08004 * 117.96441 * 42.76070 * 19 17 16 36 36 H 1.08002 * 117.96781 * 180.23731 * 20 19 17 37 37 H 1.09000 * 109.35664 * 103.33988 * 21 20 19 38 38 H 1.08997 * 109.35897 * 223.06676 * 21 20 19 39 39 H 1.08997 * 109.64512 * 169.11725 * 22 21 20 40 40 H 1.09001 * 109.64525 * 289.54124 * 22 21 20 41 41 H 1.08993 * 109.64759 * 49.95222 * 23 17 16 42 42 H 1.09007 * 109.63952 * 289.31965 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1856 2.9788 -1.4424 6 6 3.5276 3.5719 -2.6283 7 1 3.2573 3.1046 -3.5636 8 6 4.2218 4.7740 -2.6283 9 7 4.5517 5.3435 -1.4884 10 14 4.6890 5.5829 -4.2459 11 1 4.2070 4.7469 -5.3747 12 1 4.0659 6.9285 -4.3247 13 1 6.1660 5.7159 -4.3245 14 6 2.1388 -1.1672 -0.0005 15 8 3.3516 -1.1673 -0.0001 16 6 1.3853 -2.4723 -0.0017 17 6 2.3794 -3.6353 -0.0014 18 1 3.0588 -3.5296 0.8443 19 6 3.1742 -3.6146 -1.2742 20 6 3.4517 -4.6682 -1.9732 21 6 3.0185 -6.0577 -1.6078 22 6 2.5934 -6.1081 -0.1387 23 6 1.6157 -4.9555 0.1232 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 3.0416 0.9507 -1.9564 30 1 1.5002 1.8407 -1.9563 31 1 3.4281 3.3988 -0.6024 32 1 5.0365 6.1836 -1.4883 33 1 0.7589 -2.5295 -0.8919 34 1 0.7583 -2.5306 0.8881 35 1 3.5338 -2.6609 -1.6313 36 1 4.0352 -4.5398 -2.8729 37 1 2.1786 -6.3516 -2.2373 38 1 3.8473 -6.7479 -1.7658 39 1 2.1025 -7.0590 0.0683 40 1 3.4700 -6.0016 0.5004 41 1 0.8107 -4.9838 -0.6110 42 1 1.2028 -5.0464 1.1279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266738773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:15 Heat of formation + Delta-G solvation = -44.164308 kcal Electronic energy + Delta-G solvation = -20180.789683 eV Core-core repulsion = 17159.889557 eV Total energy + Delta-G solvation = -3020.900126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19649 -39.24019 -37.35353 -36.06937 -33.87613 -33.17690 -31.85816 -30.20100 -28.19596 -27.29606 -25.54072 -23.66841 -23.09884 -22.60304 -20.13509 -19.21144 -18.83360 -18.02489 -17.26491 -16.90449 -16.63247 -16.41345 -15.40170 -15.37008 -15.24455 -14.96372 -14.55874 -14.45091 -13.86369 -13.70010 -13.49426 -13.23616 -13.22786 -13.06026 -12.97207 -12.87406 -12.75516 -12.38064 -12.30440 -12.12087 -11.90162 -11.67091 -11.38619 -11.04161 -11.02108 -10.62460 -9.87682 -9.66098 -9.10794 -8.01418 -5.32707 1.41063 1.43555 1.45921 1.55941 1.67940 2.03121 2.53164 3.31664 3.56203 3.81216 3.85324 4.00239 4.04094 4.13159 4.22087 4.28833 4.35649 4.41779 4.52140 4.52965 4.54640 4.70408 4.76698 4.81100 4.85307 4.91249 4.97670 5.00497 5.07075 5.09677 5.12343 5.25276 5.39503 5.44770 5.52337 5.54829 5.81136 6.10569 6.20237 6.46577 7.24235 7.26174 7.97329 8.23169 9.22194 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.003603 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.791147 B = 7768.876788 C = 8439.925218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.615 5.615 3 C 0.121 3.879 4 C 0.151 3.849 5 N -0.744 5.744 6 C -0.253 4.253 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.292 1.292 14 C 0.497 3.503 15 O -0.585 6.585 16 C -0.119 4.119 17 C -0.042 4.042 18 H 0.064 0.936 19 C -0.156 4.156 20 C -0.166 4.166 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.108 4.108 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.056 0.944 29 H -0.005 1.005 30 H 0.029 0.971 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 -23.766 4.650 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.348 5.348 3 C -0.003 4.003 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.384 4.384 7 H 0.090 0.910 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.219 1.219 14 C 0.288 3.712 15 O -0.465 6.465 16 C -0.158 4.158 17 C -0.061 4.061 18 H 0.082 0.918 19 C -0.174 4.174 20 C -0.185 4.185 21 C -0.125 4.125 22 C -0.159 4.159 23 C -0.145 4.145 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.013 0.987 30 H 0.047 0.953 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.753 -23.764 4.464 27.337 hybrid contribution 1.113 1.384 -0.671 1.898 sum -11.640 -22.380 3.793 25.510 Atomic orbital electron populations 1.22144 0.76494 1.04789 1.03712 1.47993 1.08803 1.04891 1.73086 1.21289 0.97309 0.85707 0.95959 1.20936 0.94115 0.86675 0.96001 1.42412 1.67604 1.23054 1.05625 1.19625 1.29223 1.02670 0.86895 0.90996 1.25653 1.01516 0.98784 1.00616 1.69828 1.45937 1.19907 1.26117 0.84998 0.77213 0.78115 0.78940 1.19157 1.21202 1.21881 1.21649 0.87936 0.86811 0.74834 1.90707 1.16574 1.87990 1.51249 1.21787 0.98727 0.88642 1.06626 1.19844 0.95643 0.95089 0.95500 0.91753 1.22151 1.00090 0.97743 0.97446 1.22247 1.00885 0.95663 0.99661 1.20494 1.01610 0.93069 0.97297 1.21631 0.99303 0.99318 0.95631 1.21656 0.97785 0.91772 1.03274 0.90128 0.90845 0.88311 0.88824 0.92561 0.98656 0.95271 0.79253 0.93704 0.86806 0.85275 0.91083 0.88938 0.89581 0.90633 0.89440 0.92887 0.90238 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 10.24 127.77 1.31 2.45 16 2 N -0.61 -17.04 2.87 -846.75 -2.43 -19.47 16 3 C 0.12 4.38 5.52 86.38 0.48 4.86 16 4 C 0.15 6.72 6.58 86.38 0.57 7.29 16 5 N -0.74 -40.89 5.60 -343.46 -1.92 -42.82 16 6 C -0.25 -15.02 9.99 84.03 0.84 -14.18 16 7 H 0.07 4.15 7.83 -2.92 -0.02 4.13 16 8 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 9 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 10 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 14 C 0.50 14.77 7.31 87.66 0.64 15.41 16 15 O -0.59 -23.77 13.81 -3.04 -0.04 -23.82 16 16 C -0.12 -2.15 3.70 29.85 0.11 -2.04 16 17 C -0.04 -0.88 2.11 -11.73 -0.02 -0.90 16 18 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 19 C -0.16 -4.15 8.41 27.04 0.23 -3.92 16 20 C -0.17 -3.75 9.80 27.04 0.27 -3.49 16 21 C -0.09 -1.36 6.12 29.66 0.18 -1.17 16 22 C -0.12 -1.64 6.01 30.74 0.18 -1.45 16 23 C -0.11 -1.41 5.31 30.73 0.16 -1.24 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 1.26 8.07 -2.38 -0.02 1.24 16 26 H 0.10 1.05 6.44 -2.38 -0.02 1.03 16 27 H 0.09 3.02 8.07 -2.38 -0.02 3.00 16 28 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 29 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.38 21.54 7.67 -92.71 -0.71 20.83 16 32 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.11 1.64 7.40 -2.39 -0.02 1.62 16 34 H 0.13 1.44 8.11 -2.38 -0.02 1.42 16 35 H 0.07 2.48 6.47 -2.91 -0.02 2.46 16 36 H 0.09 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 41 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 42 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -77.43 337.85 3.59 -73.83 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.27 Total: 25.73 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.41 Total: -2.31 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -4.07 Total: -123.12 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.04 Total: -23.82 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -77.43 3.59 -73.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266738773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.670 kcal (2) G-P(sol) polarization free energy of solvation -77.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds