Wall clock time and date at job start Mon Mar 30 2020 01:33:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.46492 * 120.00246 * 2 1
4 4 C 1.53003 * 109.47561 * 270.00163 * 3 2 1
5 5 N 1.46495 * 109.47357 * 180.02562 * 4 3 2
6 6 C 1.36935 * 119.99803 * 180.02562 * 5 4 3
7 7 H 1.07991 * 120.00454 * 359.97438 * 6 5 4
8 8 C 1.38813 * 119.99918 * 179.97438 * 6 5 4
9 9 N 1.31625 * 119.99967 * 0.02562 * 8 6 5
10 10 Si 1.86795 * 120.00333 * 179.97438 * 8 6 5
11 11 H 1.48506 * 109.46776 * 359.97438 * 10 8 6
12 12 H 1.48491 * 109.47415 * 119.99781 * 10 8 6
13 13 H 1.48509 * 109.47216 * 240.00234 * 10 8 6
14 14 C 1.34775 * 119.99566 * 180.02562 * 2 1 3
15 15 O 1.21283 * 120.00000 * 180.02562 * 14 2 1
16 16 C 1.50702 * 120.00245 * 0.02562 * 14 2 1
17 17 C 1.52999 * 109.47295 * 180.02562 * 16 14 2
18 18 H 1.08994 * 109.35756 * 55.26943 * 17 16 14
19 19 C 1.50065 * 109.48230 * 295.83059 * 17 16 14
20 20 C 1.29443 * 124.07980 * 223.00478 * 19 17 16
21 21 C 1.50070 * 124.07366 * 359.94620 * 20 19 17
22 22 C 1.53027 * 110.14693 * 343.13269 * 21 20 19
23 23 C 1.53022 * 109.35935 * 175.00086 * 17 16 14
24 24 H 1.08993 * 109.47530 * 270.00280 * 1 2 3
25 25 H 1.09006 * 109.46973 * 30.00130 * 1 2 3
26 26 H 1.09004 * 109.47442 * 149.99653 * 1 2 3
27 27 H 1.09004 * 109.47278 * 30.00115 * 3 2 1
28 28 H 1.09001 * 109.47439 * 149.99758 * 3 2 1
29 29 H 1.09004 * 109.46785 * 300.00253 * 4 3 2
30 30 H 1.09001 * 109.47075 * 59.99372 * 4 3 2
31 31 H 0.96998 * 120.00076 * 359.97438 * 5 4 3
32 32 H 0.97000 * 120.00247 * 180.02562 * 9 8 6
33 33 H 1.08997 * 109.47465 * 59.99576 * 16 14 2
34 34 H 1.09007 * 109.46629 * 299.99702 * 16 14 2
35 35 H 1.08004 * 117.96441 * 42.76070 * 19 17 16
36 36 H 1.08002 * 117.96781 * 180.23731 * 20 19 17
37 37 H 1.09000 * 109.35664 * 103.33988 * 21 20 19
38 38 H 1.08997 * 109.35897 * 223.06676 * 21 20 19
39 39 H 1.08997 * 109.64512 * 169.11725 * 22 21 20
40 40 H 1.09001 * 109.64525 * 289.54124 * 22 21 20
41 41 H 1.08993 * 109.64759 * 49.95222 * 23 17 16
42 42 H 1.09007 * 109.63952 * 289.31965 * 23 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2686 0.0000
4 6 2.4526 1.7104 -1.4425
5 7 3.1856 2.9788 -1.4424
6 6 3.5276 3.5719 -2.6283
7 1 3.2573 3.1046 -3.5636
8 6 4.2218 4.7740 -2.6283
9 7 4.5517 5.3435 -1.4884
10 14 4.6890 5.5829 -4.2459
11 1 4.2070 4.7469 -5.3747
12 1 4.0659 6.9285 -4.3247
13 1 6.1660 5.7159 -4.3245
14 6 2.1388 -1.1672 -0.0005
15 8 3.3516 -1.1673 -0.0001
16 6 1.3853 -2.4723 -0.0017
17 6 2.3794 -3.6353 -0.0014
18 1 3.0588 -3.5296 0.8443
19 6 3.1742 -3.6146 -1.2742
20 6 3.4517 -4.6682 -1.9732
21 6 3.0185 -6.0577 -1.6078
22 6 2.5934 -6.1081 -0.1387
23 6 1.6157 -4.9555 0.1232
24 1 -0.3634 0.0001 1.0276
25 1 -0.3633 0.8900 -0.5139
26 1 -0.3634 -0.8900 -0.5139
27 1 1.6085 2.0283 0.5139
28 1 3.1499 1.1383 0.5139
29 1 3.0416 0.9507 -1.9564
30 1 1.5002 1.8407 -1.9563
31 1 3.4281 3.3988 -0.6024
32 1 5.0365 6.1836 -1.4883
33 1 0.7589 -2.5295 -0.8919
34 1 0.7583 -2.5306 0.8881
35 1 3.5338 -2.6609 -1.6313
36 1 4.0352 -4.5398 -2.8729
37 1 2.1786 -6.3516 -2.2373
38 1 3.8473 -6.7479 -1.7658
39 1 2.1025 -7.0590 0.0683
40 1 3.4700 -6.0016 0.5004
41 1 0.8107 -4.9838 -0.6110
42 1 1.2028 -5.0464 1.1279
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001266738773.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:33:15
Heat of formation + Delta-G solvation = -44.164308 kcal
Electronic energy + Delta-G solvation = -20180.789683 eV
Core-core repulsion = 17159.889557 eV
Total energy + Delta-G solvation = -3020.900126 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.19649 -39.24019 -37.35353 -36.06937 -33.87613 -33.17690 -31.85816 -30.20100
-28.19596 -27.29606 -25.54072 -23.66841 -23.09884 -22.60304 -20.13509 -19.21144
-18.83360 -18.02489 -17.26491 -16.90449 -16.63247 -16.41345 -15.40170 -15.37008
-15.24455 -14.96372 -14.55874 -14.45091 -13.86369 -13.70010 -13.49426 -13.23616
-13.22786 -13.06026 -12.97207 -12.87406 -12.75516 -12.38064 -12.30440 -12.12087
-11.90162 -11.67091 -11.38619 -11.04161 -11.02108 -10.62460 -9.87682 -9.66098
-9.10794 -8.01418 -5.32707 1.41063 1.43555 1.45921 1.55941 1.67940
2.03121 2.53164 3.31664 3.56203 3.81216 3.85324 4.00239 4.04094
4.13159 4.22087 4.28833 4.35649 4.41779 4.52140 4.52965 4.54640
4.70408 4.76698 4.81100 4.85307 4.91249 4.97670 5.00497 5.07075
5.09677 5.12343 5.25276 5.39503 5.44770 5.52337 5.54829 5.81136
6.10569 6.20237 6.46577 7.24235 7.26174 7.97329 8.23169 9.22194
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.026590 B = 0.003603 C = 0.003317
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1052.791147 B = 7768.876788 C = 8439.925218
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.615 5.615
3 C 0.121 3.879
4 C 0.151 3.849
5 N -0.744 5.744
6 C -0.253 4.253
7 H 0.072 0.928
8 C -0.073 4.073
9 N -0.968 5.968
10 Si 0.979 3.021
11 H -0.267 1.267
12 H -0.285 1.285
13 H -0.292 1.292
14 C 0.497 3.503
15 O -0.585 6.585
16 C -0.119 4.119
17 C -0.042 4.042
18 H 0.064 0.936
19 C -0.156 4.156
20 C -0.166 4.166
21 C -0.088 4.088
22 C -0.121 4.121
23 C -0.108 4.108
24 H 0.080 0.920
25 H 0.073 0.927
26 H 0.098 0.902
27 H 0.094 0.906
28 H 0.056 0.944
29 H -0.005 1.005
30 H 0.029 0.971
31 H 0.375 0.625
32 H 0.254 0.746
33 H 0.114 0.886
34 H 0.129 0.871
35 H 0.071 0.929
36 H 0.092 0.908
37 H 0.086 0.914
38 H 0.075 0.925
39 H 0.087 0.913
40 H 0.052 0.948
41 H 0.079 0.921
42 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.353 -23.766 4.650 27.654
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.348 5.348
3 C -0.003 4.003
4 C 0.023 3.977
5 N -0.387 5.387
6 C -0.384 4.384
7 H 0.090 0.910
8 C -0.266 4.266
9 N -0.618 5.618
10 Si 0.807 3.193
11 H -0.192 1.192
12 H -0.212 1.212
13 H -0.219 1.219
14 C 0.288 3.712
15 O -0.465 6.465
16 C -0.158 4.158
17 C -0.061 4.061
18 H 0.082 0.918
19 C -0.174 4.174
20 C -0.185 4.185
21 C -0.125 4.125
22 C -0.159 4.159
23 C -0.145 4.145
24 H 0.099 0.901
25 H 0.092 0.908
26 H 0.117 0.883
27 H 0.112 0.888
28 H 0.074 0.926
29 H 0.013 0.987
30 H 0.047 0.953
31 H 0.207 0.793
32 H 0.063 0.937
33 H 0.132 0.868
34 H 0.147 0.853
35 H 0.089 0.911
36 H 0.111 0.889
37 H 0.104 0.896
38 H 0.094 0.906
39 H 0.106 0.894
40 H 0.071 0.929
41 H 0.098 0.902
42 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -12.753 -23.764 4.464 27.337
hybrid contribution 1.113 1.384 -0.671 1.898
sum -11.640 -22.380 3.793 25.510
Atomic orbital electron populations
1.22144 0.76494 1.04789 1.03712 1.47993 1.08803 1.04891 1.73086
1.21289 0.97309 0.85707 0.95959 1.20936 0.94115 0.86675 0.96001
1.42412 1.67604 1.23054 1.05625 1.19625 1.29223 1.02670 0.86895
0.90996 1.25653 1.01516 0.98784 1.00616 1.69828 1.45937 1.19907
1.26117 0.84998 0.77213 0.78115 0.78940 1.19157 1.21202 1.21881
1.21649 0.87936 0.86811 0.74834 1.90707 1.16574 1.87990 1.51249
1.21787 0.98727 0.88642 1.06626 1.19844 0.95643 0.95089 0.95500
0.91753 1.22151 1.00090 0.97743 0.97446 1.22247 1.00885 0.95663
0.99661 1.20494 1.01610 0.93069 0.97297 1.21631 0.99303 0.99318
0.95631 1.21656 0.97785 0.91772 1.03274 0.90128 0.90845 0.88311
0.88824 0.92561 0.98656 0.95271 0.79253 0.93704 0.86806 0.85275
0.91083 0.88938 0.89581 0.90633 0.89440 0.92887 0.90238 0.89603
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.14 10.24 127.77 1.31 2.45 16
2 N -0.61 -17.04 2.87 -846.75 -2.43 -19.47 16
3 C 0.12 4.38 5.52 86.38 0.48 4.86 16
4 C 0.15 6.72 6.58 86.38 0.57 7.29 16
5 N -0.74 -40.89 5.60 -343.46 -1.92 -42.82 16
6 C -0.25 -15.02 9.99 84.03 0.84 -14.18 16
7 H 0.07 4.15 7.83 -2.92 -0.02 4.13 16
8 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16
9 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16
10 Si 0.98 47.65 29.55 68.60 2.03 49.68 16
11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16
12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16
13 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16
14 C 0.50 14.77 7.31 87.66 0.64 15.41 16
15 O -0.59 -23.77 13.81 -3.04 -0.04 -23.82 16
16 C -0.12 -2.15 3.70 29.85 0.11 -2.04 16
17 C -0.04 -0.88 2.11 -11.73 -0.02 -0.90 16
18 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16
19 C -0.16 -4.15 8.41 27.04 0.23 -3.92 16
20 C -0.17 -3.75 9.80 27.04 0.27 -3.49 16
21 C -0.09 -1.36 6.12 29.66 0.18 -1.17 16
22 C -0.12 -1.64 6.01 30.74 0.18 -1.45 16
23 C -0.11 -1.41 5.31 30.73 0.16 -1.24 16
24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
25 H 0.07 1.26 8.07 -2.38 -0.02 1.24 16
26 H 0.10 1.05 6.44 -2.38 -0.02 1.03 16
27 H 0.09 3.02 8.07 -2.38 -0.02 3.00 16
28 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16
29 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16
30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.38 21.54 7.67 -92.71 -0.71 20.83 16
32 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16
33 H 0.11 1.64 7.40 -2.39 -0.02 1.62 16
34 H 0.13 1.44 8.11 -2.38 -0.02 1.42 16
35 H 0.07 2.48 6.47 -2.91 -0.02 2.46 16
36 H 0.09 2.14 8.06 -2.91 -0.02 2.11 16
37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
39 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16
40 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16
41 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16
42 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16
Total: -1.00 -77.43 337.85 3.59 -73.83
By element:
Atomic # 1 Polarization: 25.46 SS G_CDS: 0.27 Total: 25.73 kcal
Atomic # 6 Polarization: -7.72 SS G_CDS: 5.41 Total: -2.31 kcal
Atomic # 7 Polarization: -119.04 SS G_CDS: -4.07 Total: -123.12 kcal
Atomic # 8 Polarization: -23.77 SS G_CDS: -0.04 Total: -23.82 kcal
Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal
Total: -77.43 3.59 -73.83 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266738773.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.670 kcal
(2) G-P(sol) polarization free energy of solvation -77.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.834 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds