Wall clock time and date at job start Mon Mar 30 2020 01:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53234 * 108.53917 * 128.92764 * 3 2 1 5 5 C 1.52956 * 109.40419 * 54.62280 * 4 3 2 6 6 C 1.50705 * 109.35348 * 176.33636 * 5 4 3 7 7 O 1.21277 * 120.00163 * 120.31678 * 6 5 4 8 8 N 1.34780 * 119.99539 * 300.31431 * 6 5 4 9 9 C 1.46494 * 120.00436 * 0.02562 * 8 6 5 10 10 C 1.46501 * 119.99548 * 179.97438 * 8 6 5 11 11 C 1.53003 * 109.46890 * 90.00279 * 10 8 6 12 12 N 1.46500 * 109.47240 * 179.97438 * 11 10 8 13 13 C 1.36933 * 120.00134 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99961 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00341 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99500 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00046 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47155 * 60.00768 * 17 15 13 19 19 H 1.48505 * 109.46992 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47519 * 299.99959 * 17 15 13 21 21 C 1.52960 * 109.81835 * 296.40343 * 5 4 3 22 22 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 23 23 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 24 24 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 25 25 H 1.09007 * 109.62335 * 248.63908 * 3 2 1 26 26 H 1.08996 * 109.62750 * 9.20445 * 3 2 1 27 27 H 1.09002 * 109.47375 * 294.64440 * 4 3 2 28 28 H 1.08999 * 109.48358 * 174.60290 * 4 3 2 29 29 H 1.09002 * 109.41534 * 56.51334 * 5 4 3 30 30 H 1.09000 * 109.47308 * 89.99364 * 9 8 6 31 31 H 1.08998 * 109.47399 * 209.99765 * 9 8 6 32 32 H 1.09003 * 109.46929 * 329.99813 * 9 8 6 33 33 H 1.08996 * 109.46951 * 209.99929 * 10 8 6 34 34 H 1.08993 * 109.47515 * 330.00632 * 10 8 6 35 35 H 1.08998 * 109.47191 * 300.00114 * 11 10 8 36 36 H 1.09006 * 109.46961 * 60.00012 * 11 10 8 37 37 H 0.96997 * 119.99916 * 0.02562 * 12 11 10 38 38 H 0.96999 * 120.00027 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.48090 * 303.61775 * 21 5 4 40 40 H 1.08998 * 109.49622 * 183.58621 * 21 5 4 41 41 H 1.09001 * 109.62477 * 350.79006 * 22 2 1 42 42 H 1.08996 * 109.62421 * 111.17059 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2488 1.1302 5 6 3.9848 -0.0024 0.9725 6 6 5.0577 -0.0041 2.0308 7 8 5.1228 -0.9166 2.8270 8 7 5.9450 1.0086 2.0923 9 6 5.8662 2.1111 1.1310 10 6 6.9877 1.0072 3.1215 11 6 8.2299 0.2906 2.5880 12 7 9.2728 0.2898 3.6168 13 6 10.4827 -0.2999 3.3648 14 1 10.6682 -0.7640 2.4074 15 6 11.4708 -0.3012 4.3398 16 7 11.2444 0.2639 5.5067 17 14 13.1214 -1.1051 3.9957 18 1 13.7641 -0.4385 2.8348 19 1 13.9950 -0.9723 5.1893 20 1 12.9173 -2.5438 3.6900 21 6 3.1191 -1.2543 1.1242 22 6 2.0857 -1.2987 -0.0062 23 1 -0.5400 -0.9354 -0.0046 24 1 -0.5399 0.9352 0.0045 25 1 2.5945 1.4211 -0.9562 26 1 1.4034 2.1326 0.1642 27 1 2.6057 1.2169 2.0911 28 1 3.7509 2.1359 1.0846 29 1 4.4488 -0.0001 -0.0138 30 1 5.2207 2.8943 1.5284 31 1 6.8638 2.5151 0.9587 32 1 5.4554 1.7442 0.1903 33 1 7.2440 2.0345 3.3803 34 1 6.6224 0.4893 4.0082 35 1 7.9736 -0.7367 2.3290 36 1 8.5953 0.8085 1.7011 37 1 9.1060 0.7063 4.4768 38 1 11.9347 0.2627 6.1882 39 1 2.6057 -1.2270 2.0854 40 1 3.7506 -2.1414 1.0745 41 1 1.4034 -2.1335 0.1541 42 1 2.5918 -1.4183 -0.9642 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266828460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:58 Heat of formation + Delta-G solvation = -15.923558 kcal Electronic energy + Delta-G solvation = -20352.468412 eV Core-core repulsion = 17332.792897 eV Total energy + Delta-G solvation = -3019.675515 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39320 -38.01123 -35.91481 -34.42338 -33.05842 -31.46905 -31.08681 -28.41017 -27.13931 -26.07876 -23.76783 -23.15736 -22.00835 -21.04388 -19.16552 -18.58237 -17.16642 -16.92340 -15.99274 -15.44951 -15.11103 -14.79561 -14.54952 -14.11663 -13.81152 -13.74155 -13.37933 -13.18125 -13.10307 -12.82324 -12.63550 -12.46859 -12.08524 -11.85581 -11.50966 -11.28206 -11.22787 -10.95339 -10.87405 -10.74223 -10.63475 -10.34700 -10.12142 -9.74380 -9.53176 -9.23193 -8.84328 -8.45757 -6.90674 -5.73560 -3.02715 1.99566 2.78778 3.12899 3.46740 3.50678 3.52239 4.31974 4.40453 4.55714 4.63987 4.78378 4.86127 4.96610 5.02433 5.16348 5.17801 5.29686 5.35296 5.45079 5.51695 5.54210 5.58713 5.63372 5.66548 5.71357 5.84309 5.86715 5.90118 6.01479 6.06961 6.14846 6.17128 6.40469 6.59424 6.62158 6.77783 6.94867 7.55214 7.72117 8.35341 8.45254 9.55755 10.12299 10.47485 11.49409 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045117 B = 0.003311 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.457529 B = 8454.993409 C = 8687.652341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.084 4.084 4 C -0.121 4.121 5 C -0.104 4.104 6 C 0.513 3.487 7 O -0.532 6.532 8 N -0.612 5.612 9 C 0.076 3.924 10 C 0.107 3.893 11 C 0.143 3.857 12 N -0.730 5.730 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.286 1.286 21 C -0.096 4.096 22 C -0.087 4.087 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.022 0.978 36 H 0.017 0.983 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.212 4.482 -13.420 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.118 4.118 3 C -0.121 4.121 4 C -0.158 4.158 5 C -0.125 4.125 6 C 0.300 3.700 7 O -0.408 6.408 8 N -0.345 5.345 9 C -0.067 4.067 10 C -0.016 4.016 11 C 0.015 3.985 12 N -0.375 5.375 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.740 3.260 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.134 4.134 22 C -0.124 4.124 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.027 3.914 -13.054 25.057 hybrid contribution 0.936 -0.211 0.067 0.961 sum -20.091 3.704 -12.987 24.208 Atomic orbital electron populations 1.23613 0.94999 1.01739 1.03454 1.22022 0.95089 0.95971 0.98716 1.20809 0.97432 0.94881 0.98950 1.21844 0.97272 0.97259 0.99473 1.21292 0.94934 0.97529 0.98751 1.20643 0.82045 0.81616 0.85656 1.90725 1.73312 1.35002 1.41775 1.47808 1.30977 1.22697 1.33055 1.21958 1.02909 0.89553 0.92309 1.21700 0.87537 1.01519 0.90801 1.20900 0.87787 0.97243 0.92585 1.42207 1.11698 1.69161 1.14456 1.19166 0.90088 1.28862 0.98854 0.91273 1.24750 0.98634 1.01494 0.96128 1.69651 1.34103 1.49435 1.05088 0.86231 0.83726 0.79195 0.76824 1.21266 1.21633 1.21232 1.21349 0.96450 0.96792 0.98796 1.20855 0.97605 0.94747 0.99192 0.88550 0.88587 0.90684 0.91028 0.91289 0.89871 0.88605 0.92371 0.90684 0.91040 0.90559 0.89767 0.96008 0.96510 0.78270 0.93433 0.91119 0.90678 0.91039 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 13.99 29.01 0.41 -1.11 16 2 C -0.12 -0.96 5.35 -100.51 -0.54 -1.50 16 3 C -0.08 -0.59 6.03 -27.49 -0.17 -0.76 16 4 C -0.12 -1.03 4.86 -26.63 -0.13 -1.16 16 5 C -0.10 -1.11 1.63 -91.81 -0.15 -1.25 16 6 C 0.51 7.77 7.07 -10.98 -0.08 7.70 16 7 O -0.53 -10.51 15.52 5.56 0.09 -10.43 16 8 N -0.61 -8.73 2.87 -181.58 -0.52 -9.25 16 9 C 0.08 0.73 8.80 59.84 0.53 1.26 16 10 C 0.11 1.89 5.52 -4.04 -0.02 1.87 16 11 C 0.14 3.12 6.58 -4.04 -0.03 3.09 16 12 N -0.73 -19.51 5.60 -59.91 -0.34 -19.85 16 13 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 14 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 17 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 C -0.10 -1.04 4.54 -26.63 -0.12 -1.16 16 22 C -0.09 -0.73 6.03 -27.48 -0.17 -0.90 16 23 H 0.10 0.67 7.92 -52.48 -0.42 0.26 16 24 H 0.10 0.63 7.92 -52.49 -0.42 0.22 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.61 4.41 -51.93 -0.23 0.38 16 29 H 0.10 0.88 7.41 -51.93 -0.38 0.50 16 30 H 0.06 0.45 6.88 -51.93 -0.36 0.10 16 31 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.07 0.54 6.03 -51.93 -0.31 0.23 16 33 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.08 1.67 7.42 -51.93 -0.39 1.28 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.91 8.00 -51.93 -0.42 0.49 16 41 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -34.13 334.39 -7.71 -41.84 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.97 Total: 4.51 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.71 Total: -1.58 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.13 Total: -57.34 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.13 -7.71 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266828460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.914 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds