Wall clock time and date at job start Mon Mar 30 2020 01:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53234 * 108.53917 * 128.92764 * 3 2 1 5 5 C 1.52956 * 109.40419 * 54.62280 * 4 3 2 6 6 C 1.50705 * 109.35348 * 176.33636 * 5 4 3 7 7 O 1.21277 * 120.00163 * 120.31678 * 6 5 4 8 8 N 1.34780 * 119.99539 * 300.31431 * 6 5 4 9 9 C 1.46494 * 120.00436 * 0.02562 * 8 6 5 10 10 C 1.46501 * 119.99548 * 179.97438 * 8 6 5 11 11 C 1.53003 * 109.46890 * 90.00279 * 10 8 6 12 12 N 1.46500 * 109.47240 * 179.97438 * 11 10 8 13 13 C 1.36933 * 120.00134 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99961 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00341 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99500 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00046 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47155 * 60.00768 * 17 15 13 19 19 H 1.48505 * 109.46992 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47519 * 299.99959 * 17 15 13 21 21 C 1.52960 * 109.81835 * 296.40343 * 5 4 3 22 22 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 23 23 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 24 24 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 25 25 H 1.09007 * 109.62335 * 248.63908 * 3 2 1 26 26 H 1.08996 * 109.62750 * 9.20445 * 3 2 1 27 27 H 1.09002 * 109.47375 * 294.64440 * 4 3 2 28 28 H 1.08999 * 109.48358 * 174.60290 * 4 3 2 29 29 H 1.09002 * 109.41534 * 56.51334 * 5 4 3 30 30 H 1.09000 * 109.47308 * 89.99364 * 9 8 6 31 31 H 1.08998 * 109.47399 * 209.99765 * 9 8 6 32 32 H 1.09003 * 109.46929 * 329.99813 * 9 8 6 33 33 H 1.08996 * 109.46951 * 209.99929 * 10 8 6 34 34 H 1.08993 * 109.47515 * 330.00632 * 10 8 6 35 35 H 1.08998 * 109.47191 * 300.00114 * 11 10 8 36 36 H 1.09006 * 109.46961 * 60.00012 * 11 10 8 37 37 H 0.96997 * 119.99916 * 0.02562 * 12 11 10 38 38 H 0.96999 * 120.00027 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.48090 * 303.61775 * 21 5 4 40 40 H 1.08998 * 109.49622 * 183.58621 * 21 5 4 41 41 H 1.09001 * 109.62477 * 350.79006 * 22 2 1 42 42 H 1.08996 * 109.62421 * 111.17059 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2488 1.1302 5 6 3.9848 -0.0024 0.9725 6 6 5.0577 -0.0041 2.0308 7 8 5.1228 -0.9166 2.8270 8 7 5.9450 1.0086 2.0923 9 6 5.8662 2.1111 1.1310 10 6 6.9877 1.0072 3.1215 11 6 8.2299 0.2906 2.5880 12 7 9.2728 0.2898 3.6168 13 6 10.4827 -0.2999 3.3648 14 1 10.6682 -0.7640 2.4074 15 6 11.4708 -0.3012 4.3398 16 7 11.2444 0.2639 5.5067 17 14 13.1214 -1.1051 3.9957 18 1 13.7641 -0.4385 2.8348 19 1 13.9950 -0.9723 5.1893 20 1 12.9173 -2.5438 3.6900 21 6 3.1191 -1.2543 1.1242 22 6 2.0857 -1.2987 -0.0062 23 1 -0.5400 -0.9354 -0.0046 24 1 -0.5399 0.9352 0.0045 25 1 2.5945 1.4211 -0.9562 26 1 1.4034 2.1326 0.1642 27 1 2.6057 1.2169 2.0911 28 1 3.7509 2.1359 1.0846 29 1 4.4488 -0.0001 -0.0138 30 1 5.2207 2.8943 1.5284 31 1 6.8638 2.5151 0.9587 32 1 5.4554 1.7442 0.1903 33 1 7.2440 2.0345 3.3803 34 1 6.6224 0.4893 4.0082 35 1 7.9736 -0.7367 2.3290 36 1 8.5953 0.8085 1.7011 37 1 9.1060 0.7063 4.4768 38 1 11.9347 0.2627 6.1882 39 1 2.6057 -1.2270 2.0854 40 1 3.7506 -2.1414 1.0745 41 1 1.4034 -2.1335 0.1541 42 1 2.5918 -1.4183 -0.9642 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266828460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:58 Heat of formation + Delta-G solvation = -38.014596 kcal Electronic energy + Delta-G solvation = -20353.426351 eV Core-core repulsion = 17332.792897 eV Total energy + Delta-G solvation = -3020.633454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47160 -38.87213 -37.39855 -36.15520 -34.05897 -33.15514 -31.98367 -29.97068 -27.99573 -27.23532 -25.55030 -23.89782 -23.50568 -22.21100 -20.28672 -19.27309 -19.21520 -18.03470 -17.31001 -16.73686 -16.29900 -15.79780 -15.71742 -15.39326 -15.17479 -15.13617 -14.66907 -14.38305 -14.26722 -13.97304 -13.49276 -13.39122 -13.09224 -12.94427 -12.79420 -12.74728 -12.53670 -12.33788 -12.29491 -12.18179 -11.92814 -11.89227 -11.51614 -11.04376 -10.99393 -10.70340 -9.85209 -9.68743 -9.09466 -7.99809 -5.31062 1.41458 1.44573 1.49136 1.55145 1.61615 1.98321 2.54490 3.33086 3.47547 3.65544 3.79738 4.03767 4.07178 4.11883 4.16266 4.22549 4.27769 4.36401 4.44728 4.48594 4.54084 4.63689 4.69806 4.81168 4.86245 4.91817 4.99858 5.04163 5.08503 5.09283 5.16480 5.22901 5.24220 5.36248 5.40504 5.53470 5.82037 6.04162 6.21504 6.41963 7.17764 7.27451 7.98991 8.24633 9.23468 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045117 B = 0.003311 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.457529 B = 8454.993409 C = 8687.652341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.078 4.078 4 C -0.115 4.115 5 C -0.093 4.093 6 C 0.504 3.496 7 O -0.591 6.591 8 N -0.609 5.609 9 C 0.066 3.934 10 C 0.121 3.879 11 C 0.150 3.850 12 N -0.744 5.744 13 C -0.254 4.254 14 H 0.073 0.927 15 C -0.073 4.073 16 N -0.968 5.968 17 Si 0.980 3.020 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.280 1.280 21 C -0.095 4.095 22 C -0.081 4.081 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.055 0.945 35 H -0.003 1.003 36 H 0.032 0.968 37 H 0.375 0.625 38 H 0.254 0.746 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.838 5.837 -15.838 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.133 4.133 3 C -0.115 4.115 4 C -0.152 4.152 5 C -0.114 4.114 6 C 0.293 3.707 7 O -0.471 6.471 8 N -0.342 5.342 9 C -0.075 4.075 10 C -0.003 4.003 11 C 0.022 3.978 12 N -0.387 5.387 13 C -0.386 4.386 14 H 0.091 0.909 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.807 3.193 18 H -0.198 1.198 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.133 4.133 22 C -0.118 4.118 23 H 0.116 0.884 24 H 0.126 0.874 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.015 0.985 36 H 0.050 0.950 37 H 0.207 0.793 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.683 5.303 -15.536 27.197 hybrid contribution 1.063 -0.648 0.805 1.483 sum -20.620 4.655 -14.731 25.766 Atomic orbital electron populations 1.23782 0.94991 1.02453 1.02451 1.22129 0.95431 0.96150 0.99601 1.20825 0.97094 0.94647 0.98943 1.21831 0.97429 0.96454 0.99505 1.21324 0.93729 0.98560 0.97820 1.21579 0.82609 0.80666 0.85799 1.90697 1.74868 1.37287 1.44223 1.47909 1.29475 1.23828 1.32947 1.22340 1.04057 0.88691 0.92432 1.21324 0.86773 1.01474 0.90761 1.20942 0.88355 0.96426 0.92043 1.42399 1.12236 1.68918 1.15149 1.19565 0.91162 1.28754 0.99082 0.90908 1.25654 1.02503 1.02443 0.95970 1.69813 1.35197 1.50845 1.05978 0.85132 0.78980 0.78254 0.76901 1.19781 1.21673 1.20663 1.21299 0.96749 0.96298 0.98961 1.20804 0.96992 0.95508 0.98483 0.88418 0.87439 0.88887 0.89653 0.92939 0.88049 0.86207 0.89717 0.90463 0.88252 0.88586 0.92630 0.98546 0.95047 0.79271 0.93713 0.93252 0.92783 0.90855 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.56 13.99 67.78 0.95 -1.62 16 2 C -0.13 -1.85 5.35 -16.13 -0.09 -1.93 16 3 C -0.08 -0.83 6.03 30.10 0.18 -0.65 16 4 C -0.11 -1.65 4.86 30.66 0.15 -1.50 16 5 C -0.09 -1.86 1.63 -11.57 -0.02 -1.88 16 6 C 0.50 15.31 7.07 87.66 0.62 15.93 16 7 O -0.59 -24.61 15.52 -3.02 -0.05 -24.66 16 8 N -0.61 -16.78 2.87 -846.77 -2.43 -19.21 16 9 C 0.07 1.05 8.80 127.77 1.12 2.17 16 10 C 0.12 4.30 5.52 86.38 0.48 4.78 16 11 C 0.15 6.60 6.58 86.38 0.57 7.17 16 12 N -0.74 -40.49 5.60 -343.44 -1.92 -42.42 16 13 C -0.25 -14.98 9.99 84.04 0.84 -14.14 16 14 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 15 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 16 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 17 Si 0.98 47.30 29.55 68.60 2.03 49.32 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 21 C -0.09 -2.08 4.54 30.66 0.14 -1.94 16 22 C -0.08 -1.25 6.03 30.11 0.18 -1.07 16 23 H 0.10 1.19 7.92 -2.91 -0.02 1.17 16 24 H 0.11 1.12 7.92 -2.91 -0.02 1.10 16 25 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.08 0.73 7.89 -2.39 -0.02 0.71 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.08 4.41 -2.39 -0.01 1.07 16 29 H 0.12 1.84 7.41 -2.39 -0.02 1.82 16 30 H 0.08 0.96 6.88 -2.39 -0.02 0.94 16 31 H 0.08 1.25 8.07 -2.39 -0.02 1.23 16 32 H 0.10 1.06 6.03 -2.39 -0.01 1.04 16 33 H 0.10 3.03 8.07 -2.39 -0.02 3.01 16 34 H 0.06 2.30 7.42 -2.39 -0.02 2.29 16 35 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.03 1.30 8.14 -2.38 -0.02 1.29 16 37 H 0.38 21.36 7.67 -92.71 -0.71 20.65 16 38 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.05 1.38 8.00 -2.39 -0.02 1.36 16 41 H 0.07 1.09 7.89 -2.39 -0.02 1.07 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.15 334.39 3.78 -72.37 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.28 Total: 23.76 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.59 Total: 1.44 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -4.07 Total: -122.23 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -76.15 3.78 -72.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266828460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.352 kcal (2) G-P(sol) polarization free energy of solvation -76.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds