Wall clock time and date at job start Mon Mar 30 2020 00:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46847 * 2 1 4 4 C 1.36932 * 120.00457 * 95.48375 * 3 2 1 5 5 H 1.07996 * 120.00506 * 213.84341 * 4 3 2 6 6 C 1.38815 * 119.99777 * 33.83194 * 4 3 2 7 7 N 1.31616 * 119.99901 * 27.38428 * 6 4 3 8 8 Si 1.86796 * 120.00096 * 207.38385 * 6 4 3 9 9 H 1.48500 * 109.47391 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47335 * 300.00113 * 8 6 4 11 11 H 1.48498 * 109.47443 * 60.00050 * 8 6 4 12 12 C 1.46505 * 120.00173 * 275.48022 * 3 2 1 13 13 C 1.53003 * 109.46866 * 270.00229 * 12 3 2 14 14 N 1.46500 * 109.46927 * 179.97438 * 13 12 3 15 15 C 1.34779 * 120.00311 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99728 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00439 * 180.02562 * 15 14 13 18 18 C 1.52995 * 119.29362 * 250.23162 * 17 15 14 19 19 C 1.52999 * 60.37703 * 248.69212 * 18 17 15 20 20 H 1.09001 * 119.30209 * 111.30944 * 19 18 17 21 21 C 1.54268 * 118.19988 * 266.38808 * 19 18 17 22 22 C 1.54880 * 104.19703 * 87.78789 * 21 19 18 23 23 C 1.54261 * 117.41044 * 44.57037 * 17 15 14 24 24 H 1.08997 * 109.47327 * 299.99999 * 1 2 3 25 25 H 1.09001 * 109.47339 * 60.00114 * 1 2 3 26 26 H 1.08999 * 109.47048 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46704 * 240.00356 * 2 1 3 28 28 H 1.08993 * 109.47493 * 120.00178 * 2 1 3 29 29 H 0.97000 * 120.00206 * 5.79732 * 7 6 4 30 30 H 1.09002 * 109.47292 * 29.99708 * 12 3 2 31 31 H 1.08992 * 109.47369 * 150.00299 * 12 3 2 32 32 H 1.08995 * 109.47078 * 299.99593 * 13 12 3 33 33 H 1.09004 * 109.47062 * 60.00364 * 13 12 3 34 34 H 0.97003 * 120.00258 * 0.02562 * 14 13 12 35 35 H 1.09002 * 117.46851 * 356.28792 * 18 17 15 36 36 H 1.09001 * 117.45860 * 141.09341 * 18 17 15 37 37 H 1.09004 * 110.48534 * 206.47210 * 21 19 18 38 38 H 1.09003 * 110.48404 * 329.10706 * 21 19 18 39 39 H 1.08999 * 110.75966 * 80.37243 * 22 21 19 40 40 H 1.09002 * 110.75821 * 203.56004 * 22 21 19 41 41 H 1.08999 * 110.48682 * 235.04909 * 23 17 15 42 42 H 1.09000 * 110.49403 * 357.69200 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3533 1.9890 1.1804 5 1 2.1858 3.0481 1.3090 6 6 2.9081 1.2438 2.2118 7 7 3.5985 0.1565 1.9405 8 14 2.6748 1.7840 3.9847 9 1 3.3606 0.8258 4.8885 10 1 3.2537 3.1390 4.1695 11 1 1.2253 1.8171 4.3055 12 6 2.1482 2.1123 -1.2629 13 6 3.5472 1.8881 -1.8403 14 7 3.6770 2.6186 -3.1036 15 6 4.8323 2.5680 -3.7958 16 8 5.7647 1.9180 -3.3727 17 6 4.9659 3.3199 -5.0950 18 6 5.0373 2.5384 -6.4083 19 6 6.2727 3.2887 -5.9066 20 1 7.1389 2.7220 -5.5649 21 6 6.5096 4.7256 -6.4157 22 6 5.7242 5.6155 -5.4208 23 6 4.4336 4.7672 -5.1358 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7913 -0.0784 1.0194 30 1 1.4012 1.7515 -1.9701 31 1 1.9952 3.1765 -1.0842 32 1 4.2942 2.2488 -1.1333 33 1 3.7002 0.8238 -2.0192 34 1 2.9316 3.1394 -3.4414 35 1 5.0503 1.4503 -6.3458 36 1 4.5126 2.9530 -7.2691 37 1 7.5717 4.9694 -6.3893 38 1 6.1155 4.8424 -7.4253 39 1 6.2961 5.7697 -4.5058 40 1 5.4650 6.5704 -5.8781 41 1 3.7151 4.8866 -5.9467 42 1 3.9806 5.0343 -4.1811 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267246810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:16 Heat of formation + Delta-G solvation = -4.382872 kcal Electronic energy + Delta-G solvation = -20481.023930 eV Core-core repulsion = 17461.848857 eV Total energy + Delta-G solvation = -3019.175073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42822 -38.05844 -36.46644 -34.33767 -31.71817 -31.48731 -30.28908 -28.71687 -27.06302 -24.08570 -23.37083 -22.50048 -21.69331 -20.45613 -20.11736 -18.96524 -17.36467 -16.99146 -15.77543 -15.32250 -14.87961 -14.58370 -14.17386 -14.03927 -13.60599 -13.49062 -13.31270 -13.13172 -12.84477 -12.58744 -12.27174 -11.90042 -11.36793 -11.29046 -11.25366 -11.14970 -10.95881 -10.80863 -10.71090 -10.51075 -10.44621 -10.04512 -9.98404 -9.84064 -9.48092 -9.33406 -8.62401 -8.38499 -6.89393 -6.08243 -3.36277 2.72922 3.38689 3.49507 3.52544 3.58320 3.70773 4.25401 4.45668 4.57441 4.60869 4.88911 5.03289 5.15487 5.22932 5.26652 5.32514 5.46117 5.47133 5.53488 5.63161 5.70963 5.81831 5.83895 5.86735 5.96115 6.02668 6.09711 6.18393 6.21685 6.38534 6.46958 6.63948 6.68743 6.73160 6.94692 7.07443 7.32615 7.84392 8.04843 8.54076 8.56450 9.08522 9.79276 10.22196 11.13835 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027302 B = 0.004036 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.308313 B = 6935.183497 C = 7280.504975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 N -0.588 5.588 4 C -0.357 4.357 5 H 0.053 0.947 6 C -0.018 4.018 7 N -0.900 5.900 8 Si 1.062 2.938 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.292 1.292 12 C 0.141 3.859 13 C 0.097 3.903 14 N -0.720 5.720 15 C 0.548 3.452 16 O -0.543 6.543 17 C -0.178 4.178 18 C -0.125 4.125 19 C -0.130 4.130 20 H 0.119 0.881 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.087 4.087 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.083 0.917 29 H 0.270 0.730 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.395 0.605 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 8.206 -16.877 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.003 3.997 3 N -0.309 5.309 4 C -0.486 4.486 5 H 0.071 0.929 6 C -0.221 4.221 7 N -0.538 5.538 8 Si 0.892 3.108 9 H -0.211 1.211 10 H -0.219 1.219 11 H -0.219 1.219 12 C 0.013 3.987 13 C -0.028 4.028 14 N -0.370 5.370 15 C 0.333 3.667 16 O -0.421 6.421 17 C -0.181 4.181 18 C -0.162 4.162 19 C -0.148 4.148 20 H 0.137 0.863 21 C -0.133 4.133 22 C -0.160 4.160 23 C -0.124 4.124 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.228 0.772 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.582 7.304 -14.906 16.609 hybrid contribution -0.618 0.645 -1.711 1.930 sum -0.036 7.948 -16.616 18.419 Atomic orbital electron populations 1.22224 0.99852 0.99067 1.00772 1.20987 0.91388 0.86516 1.00805 1.43925 1.73836 1.11890 1.01273 1.19865 1.40986 0.95638 0.92134 0.92881 1.25909 0.94116 0.97665 1.04447 1.70772 1.32275 1.28019 1.22780 0.83574 0.76060 0.75359 0.75847 1.21059 1.21894 1.21933 1.21074 0.91817 0.96957 0.88842 1.22425 1.01894 0.95697 0.82821 1.46094 1.14771 1.51710 1.24435 1.19341 0.82653 0.80641 0.84053 1.90703 1.39063 1.42723 1.69566 1.22429 1.05788 0.97730 0.92181 1.23089 0.99852 0.99053 0.94233 1.23347 0.91920 0.97892 1.01652 0.86326 1.21973 1.00692 0.91979 0.98654 1.23035 0.95627 0.97890 0.99445 1.22314 0.97401 0.90318 1.02384 0.92836 0.94626 0.94387 0.95757 0.89864 0.91901 0.94222 0.93268 0.91336 0.92637 0.77172 0.88046 0.88166 0.90908 0.91164 0.91063 0.91116 0.90723 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.23 37.16 0.38 -2.79 16 2 C 0.13 2.99 5.45 -4.04 -0.02 2.97 16 3 N -0.59 -14.38 2.26 -173.24 -0.39 -14.77 16 4 C -0.36 -9.80 9.40 -15.06 -0.14 -9.94 16 5 H 0.05 1.47 7.96 -52.49 -0.42 1.06 16 6 C -0.02 -0.49 4.77 -17.43 -0.08 -0.58 16 7 N -0.90 -26.85 12.18 55.49 0.68 -26.17 16 8 Si 1.06 25.14 30.00 -169.99 -5.10 20.04 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.14 2.85 5.80 -4.04 -0.02 2.83 16 13 C 0.10 1.98 6.00 -4.04 -0.02 1.95 16 14 N -0.72 -11.67 5.38 -60.29 -0.32 -12.00 16 15 C 0.55 9.37 7.42 -10.98 -0.08 9.29 16 16 O -0.54 -11.83 16.79 5.56 0.09 -11.74 16 17 C -0.18 -2.21 2.63 -154.55 -0.41 -2.62 16 18 C -0.12 -1.30 9.85 -26.73 -0.26 -1.57 16 19 C -0.13 -1.47 6.54 -89.50 -0.59 -2.05 16 20 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 21 C -0.10 -0.83 6.63 -25.08 -0.17 -1.00 16 22 C -0.12 -1.10 6.96 -23.55 -0.16 -1.26 16 23 C -0.09 -0.85 6.34 -23.88 -0.15 -1.00 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.53 8.11 -51.93 -0.42 0.11 16 28 H 0.08 2.19 5.42 -51.93 -0.28 1.91 16 29 H 0.27 8.20 7.24 -40.82 -0.30 7.90 16 30 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 32 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.40 5.10 7.94 -40.82 -0.32 4.77 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.77 7.56 -51.93 -0.39 0.38 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -32.15 342.15 -8.88 -41.04 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.26 Total: 4.22 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.73 Total: -5.77 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.04 Total: -52.94 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.15 -8.88 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267246810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.653 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds