Wall clock time and date at job start Mon Mar 30 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46847 * 2 1 4 4 C 1.36932 * 120.00457 * 95.48375 * 3 2 1 5 5 H 1.07996 * 120.00506 * 213.84341 * 4 3 2 6 6 C 1.38815 * 119.99777 * 33.83194 * 4 3 2 7 7 N 1.31616 * 119.99901 * 27.38428 * 6 4 3 8 8 Si 1.86796 * 120.00096 * 207.38385 * 6 4 3 9 9 H 1.48500 * 109.47391 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47335 * 300.00113 * 8 6 4 11 11 H 1.48498 * 109.47443 * 60.00050 * 8 6 4 12 12 C 1.46505 * 120.00173 * 275.48022 * 3 2 1 13 13 C 1.53003 * 109.46866 * 270.00229 * 12 3 2 14 14 N 1.46500 * 109.46927 * 179.97438 * 13 12 3 15 15 C 1.34779 * 120.00311 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99728 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00439 * 180.02562 * 15 14 13 18 18 C 1.52995 * 119.29362 * 250.23162 * 17 15 14 19 19 C 1.52999 * 60.37703 * 248.69212 * 18 17 15 20 20 H 1.09001 * 119.30209 * 111.30944 * 19 18 17 21 21 C 1.54268 * 118.19988 * 266.38808 * 19 18 17 22 22 C 1.54880 * 104.19703 * 87.78789 * 21 19 18 23 23 C 1.54261 * 117.41044 * 44.57037 * 17 15 14 24 24 H 1.08997 * 109.47327 * 299.99999 * 1 2 3 25 25 H 1.09001 * 109.47339 * 60.00114 * 1 2 3 26 26 H 1.08999 * 109.47048 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46704 * 240.00356 * 2 1 3 28 28 H 1.08993 * 109.47493 * 120.00178 * 2 1 3 29 29 H 0.97000 * 120.00206 * 5.79732 * 7 6 4 30 30 H 1.09002 * 109.47292 * 29.99708 * 12 3 2 31 31 H 1.08992 * 109.47369 * 150.00299 * 12 3 2 32 32 H 1.08995 * 109.47078 * 299.99593 * 13 12 3 33 33 H 1.09004 * 109.47062 * 60.00364 * 13 12 3 34 34 H 0.97003 * 120.00258 * 0.02562 * 14 13 12 35 35 H 1.09002 * 117.46851 * 356.28792 * 18 17 15 36 36 H 1.09001 * 117.45860 * 141.09341 * 18 17 15 37 37 H 1.09004 * 110.48534 * 206.47210 * 21 19 18 38 38 H 1.09003 * 110.48404 * 329.10706 * 21 19 18 39 39 H 1.08999 * 110.75966 * 80.37243 * 22 21 19 40 40 H 1.09002 * 110.75821 * 203.56004 * 22 21 19 41 41 H 1.08999 * 110.48682 * 235.04909 * 23 17 15 42 42 H 1.09000 * 110.49403 * 357.69200 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3533 1.9890 1.1804 5 1 2.1858 3.0481 1.3090 6 6 2.9081 1.2438 2.2118 7 7 3.5985 0.1565 1.9405 8 14 2.6748 1.7840 3.9847 9 1 3.3606 0.8258 4.8885 10 1 3.2537 3.1390 4.1695 11 1 1.2253 1.8171 4.3055 12 6 2.1482 2.1123 -1.2629 13 6 3.5472 1.8881 -1.8403 14 7 3.6770 2.6186 -3.1036 15 6 4.8323 2.5680 -3.7958 16 8 5.7647 1.9180 -3.3727 17 6 4.9659 3.3199 -5.0950 18 6 5.0373 2.5384 -6.4083 19 6 6.2727 3.2887 -5.9066 20 1 7.1389 2.7220 -5.5649 21 6 6.5096 4.7256 -6.4157 22 6 5.7242 5.6155 -5.4208 23 6 4.4336 4.7672 -5.1358 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7913 -0.0784 1.0194 30 1 1.4012 1.7515 -1.9701 31 1 1.9952 3.1765 -1.0842 32 1 4.2942 2.2488 -1.1333 33 1 3.7002 0.8238 -2.0192 34 1 2.9316 3.1394 -3.4414 35 1 5.0503 1.4503 -6.3458 36 1 4.5126 2.9530 -7.2691 37 1 7.5717 4.9694 -6.3893 38 1 6.1155 4.8424 -7.4253 39 1 6.2961 5.7697 -4.5058 40 1 5.4650 6.5704 -5.8781 41 1 3.7151 4.8866 -5.9467 42 1 3.9806 5.0343 -4.1811 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267246810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:15 Heat of formation + Delta-G solvation = -24.277752 kcal Electronic energy + Delta-G solvation = -20481.886637 eV Core-core repulsion = 17461.848857 eV Total energy + Delta-G solvation = -3020.037780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55280 -39.31979 -38.29332 -35.98218 -33.50454 -32.50247 -31.92628 -29.87467 -28.59317 -25.93557 -24.77708 -23.68984 -22.94792 -21.95971 -21.29589 -20.27482 -19.23192 -18.18150 -17.26132 -16.74676 -16.18123 -16.04639 -15.87863 -15.53118 -15.43816 -14.69053 -14.53434 -14.32264 -14.11380 -14.00159 -13.90051 -13.08267 -12.86627 -12.72741 -12.61343 -12.55770 -12.21881 -12.08643 -12.00603 -11.92513 -11.90997 -11.81118 -11.39379 -11.33108 -10.79899 -10.70946 -10.47566 -10.19658 -8.95551 -8.24238 -5.52507 1.43082 1.57572 1.64148 1.83345 2.05673 2.59286 2.65678 3.17778 3.43449 3.54037 3.59747 3.74755 3.89616 4.08121 4.17898 4.23001 4.35017 4.38728 4.46243 4.51196 4.60421 4.70756 4.73384 4.77084 4.79284 4.90974 4.95220 4.97933 5.01586 5.05577 5.13731 5.16765 5.26204 5.30436 5.37866 5.44601 5.52306 5.88751 6.34711 6.50667 7.04680 7.19673 7.73510 8.15361 8.92548 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027302 B = 0.004036 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.308313 B = 6935.183497 C = 7280.504975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.127 3.873 3 N -0.605 5.605 4 C -0.359 4.359 5 H 0.049 0.951 6 C -0.069 4.069 7 N -0.928 5.928 8 Si 1.110 2.890 9 H -0.294 1.294 10 H -0.277 1.277 11 H -0.275 1.275 12 C 0.146 3.854 13 C 0.119 3.881 14 N -0.704 5.704 15 C 0.540 3.460 16 O -0.601 6.601 17 C -0.192 4.192 18 C -0.104 4.104 19 C -0.138 4.138 20 H 0.091 0.909 21 C -0.087 4.087 22 C -0.123 4.123 23 C -0.081 4.081 24 H 0.037 0.963 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.252 0.748 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.030 0.970 34 H 0.416 0.584 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 10.178 -19.130 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.002 3.998 3 N -0.327 5.327 4 C -0.488 4.488 5 H 0.066 0.934 6 C -0.267 4.267 7 N -0.569 5.569 8 Si 0.934 3.066 9 H -0.220 1.220 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.019 3.981 13 C -0.008 4.008 14 N -0.356 5.356 15 C 0.328 3.672 16 O -0.482 6.482 17 C -0.195 4.195 18 C -0.141 4.141 19 C -0.157 4.157 20 H 0.109 0.891 21 C -0.125 4.125 22 C -0.160 4.160 23 C -0.118 4.118 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.253 0.747 35 H 0.106 0.894 36 H 0.156 0.844 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.413 9.316 -17.207 19.617 hybrid contribution 0.026 0.013 -1.083 1.084 sum -1.387 9.328 -18.290 20.578 Atomic orbital electron populations 1.22045 0.96685 1.00768 1.00972 1.20968 0.93777 0.85700 0.99400 1.44151 1.74155 1.12391 1.01976 1.20072 1.39702 0.95574 0.93483 0.93351 1.27206 0.93792 0.97543 1.08141 1.70902 1.34793 1.29744 1.21423 0.82936 0.76821 0.75338 0.71467 1.21982 1.20316 1.20090 1.21142 0.91999 0.97091 0.87858 1.21865 1.00802 0.94379 0.83764 1.45840 1.15660 1.51252 1.22851 1.20294 0.81613 0.79893 0.85369 1.90674 1.40919 1.45310 1.71315 1.22453 1.07734 0.99139 0.90152 1.23220 0.98757 0.98368 0.93783 1.23490 0.91012 0.99646 1.01581 0.89093 1.21997 1.01204 0.89502 0.99757 1.23060 0.95010 0.99087 0.98866 1.22390 0.98262 0.87898 1.03292 0.94333 0.92560 0.91981 0.95194 0.93374 0.93837 0.90950 0.92388 0.96012 0.95129 0.74718 0.89353 0.84363 0.90606 0.88429 0.93191 0.88396 0.87546 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 10.23 71.98 0.74 -4.78 16 2 C 0.13 5.93 5.45 86.38 0.47 6.41 16 3 N -0.60 -29.80 2.26 -702.01 -1.58 -31.38 16 4 C -0.36 -19.92 9.40 84.04 0.79 -19.13 16 5 H 0.05 2.70 7.96 -2.91 -0.02 2.67 16 6 C -0.07 -3.95 4.77 84.86 0.40 -3.54 16 7 N -0.93 -57.52 12.18 21.65 0.26 -57.25 16 8 Si 1.11 51.27 30.00 68.60 2.06 53.32 16 9 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 C 0.15 5.81 5.80 86.38 0.50 6.31 16 13 C 0.12 5.01 6.00 86.38 0.52 5.53 16 14 N -0.70 -22.83 5.38 -463.05 -2.49 -25.32 16 15 C 0.54 18.86 7.42 87.66 0.65 19.51 16 16 O -0.60 -27.76 16.79 -3.03 -0.05 -27.81 16 17 C -0.19 -4.50 2.63 -52.21 -0.14 -4.64 16 18 C -0.10 -1.92 9.85 30.59 0.30 -1.62 16 19 C -0.14 -2.99 6.54 -10.07 -0.07 -3.06 16 20 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 21 C -0.09 -1.27 6.63 31.67 0.21 -1.06 16 22 C -0.12 -1.86 6.96 32.66 0.23 -1.63 16 23 C -0.08 -1.33 6.34 32.44 0.21 -1.13 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 27 H 0.03 1.33 8.11 -2.39 -0.02 1.31 16 28 H 0.05 2.62 5.42 -2.39 -0.01 2.60 16 29 H 0.25 16.14 7.24 -92.71 -0.67 15.46 16 30 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 31 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.42 10.00 7.94 -92.71 -0.74 9.26 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.23 7.56 -2.39 -0.02 1.21 16 Total: -1.00 -74.43 342.15 3.36 -71.07 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.35 Total: 20.19 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 4.81 Total: -2.82 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -3.81 Total: -113.95 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.06 Total: 53.32 kcal Total: -74.43 3.36 -71.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267246810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.794 kcal (2) G-P(sol) polarization free energy of solvation -74.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds