Wall clock time and date at job start Mon Mar 30 2020 00:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47529 * 2 1 4 4 C 1.36930 * 120.00147 * 270.33262 * 3 2 1 5 5 H 1.08003 * 120.00337 * 326.14666 * 4 3 2 6 6 C 1.38821 * 119.99959 * 146.14080 * 4 3 2 7 7 N 1.31611 * 119.99926 * 336.90014 * 6 4 3 8 8 Si 1.86800 * 119.99730 * 156.89664 * 6 4 3 9 9 H 1.48498 * 109.47145 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46903 * 120.00285 * 8 6 4 11 11 H 1.48500 * 109.47217 * 240.00181 * 8 6 4 12 12 C 1.46500 * 119.99807 * 90.32984 * 3 2 1 13 13 C 1.53003 * 109.47114 * 90.00267 * 12 3 2 14 14 N 1.46500 * 109.47114 * 180.02562 * 13 12 3 15 15 C 1.34772 * 120.00224 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99540 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00515 * 180.02562 * 15 14 13 18 18 C 1.53006 * 110.93964 * 303.98623 * 17 15 14 19 19 C 1.54625 * 111.04069 * 179.97438 * 17 15 14 20 20 C 1.51102 * 104.82679 * 266.65511 * 19 17 15 21 21 C 1.30533 * 111.09998 * 343.50438 * 20 19 17 22 22 C 1.51092 * 111.10572 * 0.02562 * 21 20 19 23 23 H 1.08992 * 109.47405 * 59.99430 * 1 2 3 24 24 H 1.09004 * 109.47326 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46883 * 299.99828 * 1 2 3 26 26 H 1.09006 * 109.46883 * 240.00172 * 2 1 3 27 27 H 1.09005 * 109.47403 * 120.00278 * 2 1 3 28 28 H 0.96999 * 120.00019 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46901 * 330.00258 * 12 3 2 30 30 H 1.08998 * 109.47137 * 210.00866 * 12 3 2 31 31 H 1.08999 * 109.46714 * 59.99787 * 13 12 3 32 32 H 1.08997 * 109.47177 * 299.99998 * 13 12 3 33 33 H 0.97006 * 119.99901 * 0.02562 * 14 13 12 34 34 H 1.08999 * 109.47479 * 296.00811 * 18 17 15 35 35 H 1.09006 * 109.47444 * 56.01541 * 18 17 15 36 36 H 1.09002 * 109.46722 * 176.00862 * 18 17 15 37 37 H 1.09004 * 110.39105 * 147.79169 * 19 17 15 38 38 H 1.09002 * 110.39208 * 25.52529 * 19 17 15 39 39 H 1.08001 * 124.45358 * 163.48554 * 20 19 17 40 40 H 1.07998 * 124.44230 * 179.97438 * 21 20 19 41 41 H 1.09001 * 110.38966 * 135.24586 * 22 21 20 42 42 H 1.09007 * 110.38400 * 257.51149 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2402 2.0290 -1.1858 5 1 2.5925 1.4774 -2.0449 6 6 2.0121 3.3948 -1.2838 7 7 1.1857 3.9857 -0.4471 8 14 2.8782 4.3940 -2.6033 9 1 3.7475 3.5004 -3.4101 10 1 1.8674 5.0296 -3.4861 11 1 3.7076 5.4462 -1.9629 12 6 2.2695 2.0693 1.2687 13 6 3.7169 1.8280 1.7021 14 7 3.9678 2.5156 2.9711 15 6 5.1838 2.4434 3.5478 16 8 6.0701 1.8088 3.0163 17 6 5.4418 3.1502 4.8534 18 6 5.1202 4.6418 4.7406 19 6 6.8975 2.9299 5.3258 20 6 6.8296 1.7295 6.2410 21 6 5.6015 1.4917 6.6137 22 6 4.6456 2.4933 6.0087 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 1.0266 4.9401 -0.5153 29 1 1.5928 1.6837 2.0313 30 1 2.1017 3.1388 1.1414 31 1 4.3935 2.2136 0.9394 32 1 3.8845 0.7585 1.8294 33 1 3.2587 3.0229 3.3964 34 1 5.7945 5.1055 4.0206 35 1 4.0901 4.7673 4.4069 36 1 5.2469 5.1154 5.7142 37 1 7.2562 3.8031 5.8709 38 1 7.5457 2.7220 4.4744 39 1 7.6848 1.1449 6.5465 40 1 5.3072 0.6843 7.2679 41 1 3.7611 1.9879 5.6210 42 1 4.3609 3.2413 6.7487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267251638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:24 Heat of formation + Delta-G solvation = -9.730590 kcal Electronic energy + Delta-G solvation = -20806.343728 eV Core-core repulsion = 17786.936760 eV Total energy + Delta-G solvation = -3019.406968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32019 -37.50996 -36.19128 -34.11306 -31.87285 -31.83248 -29.58361 -28.24834 -27.34381 -25.60101 -24.15873 -22.82218 -21.53671 -20.06092 -19.02060 -18.88764 -17.00454 -16.44835 -15.78335 -15.31963 -14.99871 -14.61781 -14.13612 -13.86485 -13.66756 -13.16738 -12.88767 -12.72553 -12.57791 -12.29258 -12.18772 -12.14281 -12.03046 -11.31155 -11.20459 -11.17065 -11.08450 -10.88514 -10.70633 -10.62521 -10.33290 -10.04720 -9.91523 -9.78193 -9.39430 -8.91174 -8.57275 -8.43221 -6.68519 -5.83609 -3.36996 2.24620 3.01086 3.34227 3.43668 3.47373 3.60227 4.39853 4.47240 4.58682 4.82160 5.10622 5.19594 5.28774 5.35646 5.53674 5.56456 5.60854 5.67606 5.74399 5.85126 5.95724 6.07288 6.07975 6.11355 6.16462 6.21791 6.41160 6.49294 6.53231 6.56343 6.65106 6.85517 6.93004 6.95625 7.06879 7.23431 7.59861 7.79500 7.99543 8.45141 8.66012 9.13386 9.77177 10.32757 11.16888 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.005069 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.231156 B = 5522.875582 C = 6221.974280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.256 4.256 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.288 1.288 12 C 0.133 3.867 13 C 0.100 3.900 14 N -0.717 5.717 15 C 0.523 3.477 16 O -0.545 6.545 17 C -0.090 4.090 18 C -0.135 4.135 19 C -0.085 4.085 20 C -0.153 4.153 21 C -0.177 4.177 22 C -0.086 4.086 23 H 0.055 0.945 24 H 0.031 0.969 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.033 0.967 28 H 0.254 0.746 29 H 0.027 0.973 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.396 0.604 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -0.631 13.923 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 N -0.302 5.302 4 C -0.385 4.385 5 H 0.082 0.918 6 C -0.191 4.191 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.214 1.214 12 C 0.006 3.994 13 C -0.026 4.026 14 N -0.368 5.368 15 C 0.308 3.692 16 O -0.422 6.422 17 C -0.093 4.093 18 C -0.193 4.193 19 C -0.122 4.122 20 C -0.171 4.171 21 C -0.195 4.195 22 C -0.123 4.123 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.230 0.770 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.093 0.907 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.740 -0.947 13.477 14.679 hybrid contribution 0.009 0.749 -0.423 0.860 sum 5.748 -0.198 13.054 14.265 Atomic orbital electron populations 1.22263 0.99582 0.98409 1.01884 1.20906 0.92045 0.87247 0.98336 1.43721 1.74328 1.10101 1.02015 1.19145 1.37879 0.91213 0.90284 0.91810 1.25060 0.97335 0.98497 0.98193 1.69973 1.33509 1.10170 1.39432 0.86343 0.79493 0.80247 0.81466 1.20032 1.21679 1.21437 1.21097 0.89122 1.02610 0.86579 1.22311 1.01842 0.95399 0.82998 1.46065 1.12543 1.53192 1.24979 1.20148 0.82596 0.80796 0.85661 1.90650 1.44235 1.42560 1.64764 1.21691 0.97733 0.96496 0.93402 1.21778 1.02502 0.92418 1.02574 1.21345 0.95253 0.96609 0.99008 1.23234 0.97699 0.97874 0.98262 1.23186 0.95271 0.99553 1.01484 1.21472 0.97902 0.97264 0.95668 0.92634 0.95031 0.93875 0.93836 0.94828 0.93637 0.95499 0.87728 0.91789 0.93445 0.77026 0.91774 0.91621 0.91505 0.90248 0.89402 0.85922 0.85884 0.90720 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 37.16 0.38 -2.82 16 2 C 0.14 2.96 6.39 -4.04 -0.03 2.94 16 3 N -0.58 -14.15 2.45 -173.23 -0.42 -14.58 16 4 C -0.26 -6.87 9.49 -15.06 -0.14 -7.01 16 5 H 0.06 1.73 7.93 -52.48 -0.42 1.31 16 6 C 0.01 0.24 4.95 -17.43 -0.09 0.15 16 7 N -0.89 -24.58 11.31 55.49 0.63 -23.95 16 8 Si 0.90 21.43 29.61 -169.99 -5.03 16.39 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.13 2.98 5.41 -4.04 -0.02 2.96 16 13 C 0.10 2.07 6.00 -4.04 -0.02 2.04 16 14 N -0.72 -12.28 5.39 -60.30 -0.32 -12.60 16 15 C 0.52 9.00 6.52 -10.99 -0.07 8.93 16 16 O -0.54 -11.52 15.53 5.56 0.09 -11.44 16 17 C -0.09 -1.15 0.85 -153.79 -0.13 -1.28 16 18 C -0.14 -1.45 8.43 37.16 0.31 -1.14 16 19 C -0.08 -1.05 5.71 -26.83 -0.15 -1.20 16 20 C -0.15 -1.78 10.78 -35.70 -0.38 -2.17 16 21 C -0.18 -1.98 10.78 -35.70 -0.38 -2.37 16 22 C -0.09 -0.94 5.93 -26.68 -0.16 -1.10 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 27 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 28 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 30 H 0.11 2.62 5.31 -51.93 -0.28 2.34 16 31 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 5.81 7.70 -40.82 -0.31 5.49 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.68 7.37 -51.93 -0.38 0.30 16 36 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 37 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 38 H 0.09 1.27 7.01 -51.93 -0.36 0.90 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 42 H 0.08 0.76 7.84 -51.93 -0.41 0.35 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -30.52 341.51 -7.98 -38.50 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.17 Total: 4.59 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.89 Total: -2.06 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.12 Total: -51.13 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.52 -7.98 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267251638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.768 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds