Wall clock time and date at job start Mon Mar 30 2020 00:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47529 * 2 1 4 4 C 1.36930 * 120.00147 * 270.33262 * 3 2 1 5 5 H 1.08003 * 120.00337 * 326.14666 * 4 3 2 6 6 C 1.38821 * 119.99959 * 146.14080 * 4 3 2 7 7 N 1.31611 * 119.99926 * 336.90014 * 6 4 3 8 8 Si 1.86800 * 119.99730 * 156.89664 * 6 4 3 9 9 H 1.48498 * 109.47145 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46903 * 120.00285 * 8 6 4 11 11 H 1.48500 * 109.47217 * 240.00181 * 8 6 4 12 12 C 1.46500 * 119.99807 * 90.32984 * 3 2 1 13 13 C 1.53003 * 109.47114 * 90.00267 * 12 3 2 14 14 N 1.46500 * 109.47114 * 180.02562 * 13 12 3 15 15 C 1.34772 * 120.00224 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99540 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00515 * 180.02562 * 15 14 13 18 18 C 1.53006 * 110.93964 * 303.98623 * 17 15 14 19 19 C 1.54625 * 111.04069 * 179.97438 * 17 15 14 20 20 C 1.51102 * 104.82679 * 266.65511 * 19 17 15 21 21 C 1.30533 * 111.09998 * 343.50438 * 20 19 17 22 22 C 1.51092 * 111.10572 * 0.02562 * 21 20 19 23 23 H 1.08992 * 109.47405 * 59.99430 * 1 2 3 24 24 H 1.09004 * 109.47326 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46883 * 299.99828 * 1 2 3 26 26 H 1.09006 * 109.46883 * 240.00172 * 2 1 3 27 27 H 1.09005 * 109.47403 * 120.00278 * 2 1 3 28 28 H 0.96999 * 120.00019 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46901 * 330.00258 * 12 3 2 30 30 H 1.08998 * 109.47137 * 210.00866 * 12 3 2 31 31 H 1.08999 * 109.46714 * 59.99787 * 13 12 3 32 32 H 1.08997 * 109.47177 * 299.99998 * 13 12 3 33 33 H 0.97006 * 119.99901 * 0.02562 * 14 13 12 34 34 H 1.08999 * 109.47479 * 296.00811 * 18 17 15 35 35 H 1.09006 * 109.47444 * 56.01541 * 18 17 15 36 36 H 1.09002 * 109.46722 * 176.00862 * 18 17 15 37 37 H 1.09004 * 110.39105 * 147.79169 * 19 17 15 38 38 H 1.09002 * 110.39208 * 25.52529 * 19 17 15 39 39 H 1.08001 * 124.45358 * 163.48554 * 20 19 17 40 40 H 1.07998 * 124.44230 * 179.97438 * 21 20 19 41 41 H 1.09001 * 110.38966 * 135.24586 * 22 21 20 42 42 H 1.09007 * 110.38400 * 257.51149 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2402 2.0290 -1.1858 5 1 2.5925 1.4774 -2.0449 6 6 2.0121 3.3948 -1.2838 7 7 1.1857 3.9857 -0.4471 8 14 2.8782 4.3940 -2.6033 9 1 3.7475 3.5004 -3.4101 10 1 1.8674 5.0296 -3.4861 11 1 3.7076 5.4462 -1.9629 12 6 2.2695 2.0693 1.2687 13 6 3.7169 1.8280 1.7021 14 7 3.9678 2.5156 2.9711 15 6 5.1838 2.4434 3.5478 16 8 6.0701 1.8088 3.0163 17 6 5.4418 3.1502 4.8534 18 6 5.1202 4.6418 4.7406 19 6 6.8975 2.9299 5.3258 20 6 6.8296 1.7295 6.2410 21 6 5.6015 1.4917 6.6137 22 6 4.6456 2.4933 6.0087 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 1.0266 4.9401 -0.5153 29 1 1.5928 1.6837 2.0313 30 1 2.1017 3.1388 1.1414 31 1 4.3935 2.2136 0.9394 32 1 3.8845 0.7585 1.8294 33 1 3.2587 3.0229 3.3964 34 1 5.7945 5.1055 4.0206 35 1 4.0901 4.7673 4.4069 36 1 5.2469 5.1154 5.7142 37 1 7.2562 3.8031 5.8709 38 1 7.5457 2.7220 4.4744 39 1 7.6848 1.1449 6.5465 40 1 5.3072 0.6843 7.2679 41 1 3.7611 1.9879 5.6210 42 1 4.3609 3.2413 6.7487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267251638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:23 Heat of formation + Delta-G solvation = -27.651708 kcal Electronic energy + Delta-G solvation = -20807.120845 eV Core-core repulsion = 17786.936760 eV Total energy + Delta-G solvation = -3020.184086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52984 -38.77745 -37.93537 -35.69677 -33.79430 -32.89424 -31.22312 -29.37634 -28.91161 -26.53521 -25.98707 -24.36310 -22.98360 -21.84315 -20.35732 -19.78639 -18.63092 -17.86673 -17.12291 -16.90745 -16.48058 -16.22340 -15.61159 -15.55904 -15.25959 -14.45736 -14.24999 -13.96730 -13.90757 -13.69251 -13.59931 -13.14264 -13.09857 -13.04287 -12.88502 -12.65326 -12.43692 -12.24291 -12.18520 -12.06751 -11.97774 -11.73531 -11.61507 -11.53042 -10.79700 -10.57430 -10.05373 -9.77150 -8.65998 -7.86771 -5.43227 1.38926 1.42030 1.47152 1.55953 1.65332 2.20321 2.51170 3.21715 3.44564 3.61722 3.70401 3.85894 4.09846 4.33882 4.34581 4.43869 4.44956 4.49097 4.69550 4.74486 4.78468 4.81710 4.83191 4.87524 4.93142 5.00000 5.04457 5.05894 5.14197 5.22759 5.27929 5.28745 5.43825 5.56873 5.63758 5.66018 5.79466 6.00150 6.42921 6.62225 7.12980 7.28744 7.82733 8.32790 9.10482 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.005069 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.231156 B = 5522.875582 C = 6221.974280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.268 4.268 5 H 0.054 0.946 6 C -0.030 4.030 7 N -0.909 5.909 8 Si 0.948 3.052 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.290 1.290 12 C 0.142 3.858 13 C 0.121 3.879 14 N -0.710 5.710 15 C 0.518 3.482 16 O -0.589 6.589 17 C -0.086 4.086 18 C -0.133 4.133 19 C -0.086 4.086 20 C -0.170 4.170 21 C -0.179 4.179 22 C -0.083 4.083 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.253 0.747 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.410 0.590 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.072 0.928 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -0.491 15.726 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.009 3.991 3 N -0.319 5.319 4 C -0.398 4.398 5 H 0.072 0.928 6 C -0.228 4.228 7 N -0.553 5.553 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.015 3.985 13 C -0.005 4.005 14 N -0.361 5.361 15 C 0.305 3.695 16 O -0.470 6.470 17 C -0.089 4.089 18 C -0.191 4.191 19 C -0.123 4.123 20 C -0.188 4.188 21 C -0.196 4.196 22 C -0.120 4.120 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.246 0.754 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.090 0.910 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.415 -0.806 15.303 16.253 hybrid contribution 0.115 0.637 -0.976 1.171 sum 5.530 -0.169 14.327 15.358 Atomic orbital electron populations 1.22104 0.98340 1.00228 1.00191 1.21060 0.92983 0.85710 0.99302 1.43953 1.74898 1.11214 1.01868 1.19283 1.37720 0.91756 0.91031 0.92787 1.25603 0.97955 0.99171 1.00085 1.70057 1.34351 1.10189 1.40675 0.85522 0.78466 0.78826 0.79544 1.19918 1.21416 1.21643 1.20953 0.90075 1.01110 0.86381 1.21797 0.99954 0.95043 0.83753 1.45923 1.13401 1.53017 1.23784 1.21047 0.81553 0.80046 0.86819 1.90629 1.45482 1.44565 1.66323 1.21725 0.98671 0.97361 0.91186 1.21818 1.02334 0.90776 1.04145 1.21382 0.94376 0.98182 0.98404 1.23391 0.98601 0.98141 0.98671 1.23447 0.95038 0.99809 1.01337 1.21540 0.97296 0.97884 0.95323 0.95300 0.91415 0.94452 0.93869 0.92826 0.93739 0.93914 0.90030 0.95338 0.94039 0.75357 0.92879 0.91347 0.88354 0.87751 0.92268 0.84887 0.84179 0.90990 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.69 10.24 71.98 0.74 -4.95 16 2 C 0.13 5.55 6.39 86.38 0.55 6.10 16 3 N -0.60 -29.22 2.45 -701.97 -1.72 -30.94 16 4 C -0.27 -14.56 9.49 84.04 0.80 -13.76 16 5 H 0.05 2.98 7.93 -2.91 -0.02 2.96 16 6 C -0.03 -1.65 4.95 84.87 0.42 -1.23 16 7 N -0.91 -50.64 11.31 21.65 0.24 -50.39 16 8 Si 0.95 44.47 29.61 68.60 2.03 46.50 16 9 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 12 C 0.14 6.35 5.41 86.38 0.47 6.81 16 13 C 0.12 5.08 6.00 86.38 0.52 5.60 16 14 N -0.71 -24.09 5.39 -463.07 -2.50 -26.58 16 15 C 0.52 17.72 6.52 87.66 0.57 18.30 16 16 O -0.59 -25.53 15.53 -3.03 -0.05 -25.58 16 17 C -0.09 -2.06 0.85 -51.72 -0.04 -2.10 16 18 C -0.13 -2.54 8.43 71.98 0.61 -1.93 16 19 C -0.09 -2.01 5.71 30.53 0.17 -1.84 16 20 C -0.17 -3.69 10.78 26.26 0.28 -3.40 16 21 C -0.18 -3.55 10.78 26.25 0.28 -3.27 16 22 C -0.08 -1.59 5.93 30.63 0.18 -1.41 16 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.04 1.76 8.04 -2.38 -0.02 1.74 16 27 H 0.05 1.98 8.07 -2.38 -0.02 1.96 16 28 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 29 H 0.04 1.75 8.07 -2.38 -0.02 1.73 16 30 H 0.08 4.12 5.31 -2.39 -0.01 4.11 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.41 11.58 7.70 -92.70 -0.71 10.87 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.26 7.37 -2.38 -0.02 1.25 16 36 H 0.10 1.28 8.06 -2.39 -0.02 1.26 16 37 H 0.10 1.86 7.89 -2.38 -0.02 1.84 16 38 H 0.06 1.73 7.01 -2.39 -0.02 1.71 16 39 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 40 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.07 1.44 7.86 -2.39 -0.02 1.42 16 42 H 0.11 1.54 7.84 -2.38 -0.02 1.52 16 Total: -1.00 -66.55 341.51 3.83 -62.72 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.27 Total: 21.36 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 5.55 Total: 2.91 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -3.97 Total: -107.91 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.05 Total: -25.58 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -66.55 3.83 -62.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267251638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.072 kcal (2) G-P(sol) polarization free energy of solvation -66.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds