Wall clock time and date at job start Mon Mar 30 2020 01:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 120.00209 * 2 1 4 4 C 1.52998 * 109.47010 * 270.00126 * 3 2 1 5 5 N 1.46499 * 109.47043 * 179.97438 * 4 3 2 6 6 C 1.36943 * 120.00108 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00078 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99804 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00220 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99608 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47216 * 90.00296 * 10 8 6 12 12 H 1.48507 * 109.46847 * 210.00259 * 10 8 6 13 13 H 1.48497 * 109.47424 * 330.00362 * 10 8 6 14 14 C 1.34776 * 120.00011 * 180.02562 * 2 1 3 15 15 O 1.21281 * 120.00259 * 180.02562 * 14 2 1 16 16 C 1.50706 * 119.99911 * 359.97438 * 14 2 1 17 17 C 1.52999 * 109.46925 * 180.02562 * 16 14 2 18 18 H 1.08997 * 109.64240 * 54.58726 * 17 16 14 19 19 C 1.53018 * 109.64420 * 293.94580 * 17 16 14 20 20 C 1.50066 * 110.14957 * 190.88018 * 19 17 16 21 21 C 1.29448 * 124.07460 * 17.13340 * 20 19 17 22 22 C 1.50064 * 124.07381 * 359.53155 * 21 20 19 23 23 C 1.53022 * 110.14741 * 17.13069 * 22 21 20 24 24 H 1.08994 * 109.46987 * 270.00103 * 1 2 3 25 25 H 1.09003 * 109.46510 * 30.00142 * 1 2 3 26 26 H 1.09005 * 109.46936 * 149.99670 * 1 2 3 27 27 H 1.09004 * 109.46883 * 29.99918 * 3 2 1 28 28 H 1.08996 * 109.46979 * 150.00187 * 3 2 1 29 29 H 1.08997 * 109.47310 * 299.99945 * 4 3 2 30 30 H 1.09000 * 109.47626 * 59.99973 * 4 3 2 31 31 H 0.97002 * 120.00410 * 0.02562 * 5 4 3 32 32 H 0.96997 * 120.00004 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.46550 * 60.00645 * 16 14 2 34 34 H 1.08995 * 109.47319 * 300.00936 * 16 14 2 35 35 H 1.08999 * 109.36080 * 311.08909 * 19 17 16 36 36 H 1.09002 * 109.35703 * 70.81039 * 19 17 16 37 37 H 1.08003 * 117.96587 * 197.15720 * 20 19 17 38 38 H 1.08001 * 117.96297 * 179.55424 * 21 20 19 39 39 H 1.09003 * 109.35913 * 256.92714 * 22 21 20 40 40 H 1.09002 * 109.36084 * 137.34080 * 22 21 20 41 41 H 1.09002 * 109.64212 * 190.88246 * 23 22 21 42 42 H 1.08997 * 109.64550 * 70.24845 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1846 2.9793 -1.4425 6 6 3.5273 3.5721 -2.6285 7 1 3.2576 3.1044 -3.5637 8 6 4.2205 4.7749 -2.6284 9 7 4.5487 5.3452 -1.4886 10 14 4.6873 5.5838 -4.2461 11 1 3.5980 6.4973 -4.6753 12 1 5.9418 6.3584 -4.0683 13 1 4.8933 4.5388 -5.2809 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0001 16 6 1.3854 -2.4723 -0.0005 17 6 2.3797 -3.6352 -0.0005 18 1 3.0699 -3.5272 0.8361 19 6 3.1585 -3.6461 -1.3176 20 6 3.9402 -4.9207 -1.4454 21 6 3.7124 -5.9846 -0.7440 22 6 2.6415 -6.0887 0.3021 23 6 1.6208 -4.9624 0.1253 24 1 -0.3633 0.0000 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.0416 0.9507 -1.9563 30 1 1.5002 1.8407 -1.9564 31 1 3.4272 3.3994 -0.6025 32 1 5.0334 6.1854 -1.4885 33 1 0.7585 -2.5298 -0.8903 34 1 0.7590 -2.5302 0.8896 35 1 2.4605 -3.5653 -2.1509 36 1 3.8453 -2.7999 -1.3382 37 1 4.7429 -4.9524 -2.1673 38 1 4.3319 -6.8511 -0.9224 39 1 3.0939 -6.0142 1.2910 40 1 2.1377 -7.0508 0.2090 41 1 0.9610 -4.9264 0.9922 42 1 1.0354 -5.1367 -0.7775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267413126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:21 Heat of formation + Delta-G solvation = -22.911958 kcal Electronic energy + Delta-G solvation = -20197.976122 eV Core-core repulsion = 17177.997568 eV Total energy + Delta-G solvation = -3019.978555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10098 -38.33551 -35.84689 -34.32180 -32.92010 -31.33851 -30.83995 -28.66661 -27.28206 -26.04824 -23.74209 -23.19649 -21.77819 -20.97033 -18.93323 -18.06703 -17.15841 -16.82391 -16.13540 -15.81662 -15.35998 -14.66710 -14.35003 -14.06978 -13.77728 -13.42633 -13.18382 -13.06143 -12.99349 -12.74442 -12.63634 -12.48212 -12.16220 -12.09030 -11.72512 -11.21488 -10.96897 -10.86654 -10.79925 -10.67511 -10.60080 -10.23969 -10.08593 -9.74189 -9.47615 -9.01412 -8.84754 -8.44253 -6.90532 -5.73734 -3.02831 2.24529 2.81115 3.14785 3.45949 3.50961 3.53263 4.46915 4.52025 4.62643 4.64322 4.86990 5.00479 5.09285 5.15345 5.25860 5.33696 5.37711 5.45001 5.54249 5.54784 5.60325 5.65263 5.66485 5.71344 5.73324 5.85111 5.88659 6.06328 6.08672 6.16570 6.24217 6.33326 6.59004 6.61016 6.78144 6.91917 6.95670 7.57085 7.72619 8.37828 8.45155 9.55697 10.12302 10.47355 11.49279 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.003578 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.724088 B = 7822.785623 C = 8488.239410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.107 3.893 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.508 3.492 15 O -0.530 6.530 16 C -0.134 4.134 17 C -0.071 4.071 18 H 0.081 0.919 19 C -0.095 4.095 20 C -0.141 4.141 21 C -0.172 4.172 22 C -0.088 4.088 23 C -0.116 4.116 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.461 -21.521 5.155 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.348 5.348 3 C -0.016 4.016 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.296 3.704 15 O -0.407 6.407 16 C -0.174 4.174 17 C -0.090 4.090 18 H 0.099 0.901 19 C -0.132 4.132 20 C -0.159 4.159 21 C -0.190 4.190 22 C -0.125 4.125 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.787 -21.486 4.980 24.130 hybrid contribution 0.292 0.699 -0.705 1.035 sum -9.495 -20.788 4.275 23.250 Atomic orbital electron populations 1.21800 0.79841 1.03363 1.01545 1.47866 1.06852 1.06468 1.73658 1.21690 0.97466 0.83338 0.99057 1.20897 0.94995 0.89342 0.93261 1.42221 1.67123 1.21626 1.06575 1.19212 1.29400 1.02304 0.85977 0.91222 1.24750 1.01286 0.98054 0.96930 1.69660 1.45103 1.19531 1.23951 0.86161 0.77668 0.79239 0.82970 1.21718 1.21712 1.20738 1.20679 0.88220 0.85281 0.76235 1.90703 1.13893 1.87131 1.48924 1.21793 0.99200 0.92434 1.03995 1.20966 0.96304 0.92349 0.99374 0.90108 1.20656 0.99115 0.96855 0.96526 1.22141 0.99478 0.94864 0.99400 1.21972 0.99867 0.98186 0.98973 1.20398 0.95364 0.98599 0.98096 1.21679 0.97506 0.94296 1.01826 0.92742 0.90646 0.91252 0.90645 0.89755 0.95978 0.96559 0.78275 0.93490 0.89009 0.89081 0.91362 0.88804 0.88166 0.88383 0.91105 0.91379 0.91696 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.24 59.85 0.61 1.36 16 2 N -0.61 -8.67 2.87 -181.57 -0.52 -9.19 16 3 C 0.11 1.88 5.52 -4.04 -0.02 1.86 16 4 C 0.14 3.10 6.58 -4.04 -0.03 3.07 16 5 N -0.73 -19.46 5.60 -59.91 -0.34 -19.79 16 6 C -0.24 -6.93 9.99 -15.05 -0.15 -7.08 16 7 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.93 13.06 55.49 0.72 -28.20 16 10 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.51 7.42 7.44 -10.98 -0.08 7.34 16 15 O -0.53 -9.99 13.68 5.56 0.08 -9.92 16 16 C -0.13 -1.34 3.73 -27.88 -0.10 -1.44 16 17 C -0.07 -0.76 1.87 -90.41 -0.17 -0.93 16 18 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 19 C -0.09 -1.15 5.05 -28.18 -0.14 -1.29 16 20 C -0.14 -1.57 9.80 -35.90 -0.35 -1.92 16 21 C -0.17 -1.68 9.80 -35.90 -0.35 -2.04 16 22 C -0.09 -0.73 6.12 -28.18 -0.17 -0.90 16 23 C -0.12 -0.95 5.31 -26.51 -0.14 -1.09 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 26 H 0.07 0.51 6.44 -51.93 -0.33 0.17 16 27 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.08 1.65 7.42 -51.93 -0.39 1.27 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.38 10.59 7.67 -40.82 -0.31 10.28 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.09 0.77 7.35 -51.93 -0.38 0.39 16 34 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 36 H 0.09 1.43 6.31 -51.93 -0.33 1.10 16 37 H 0.10 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.10 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -33.81 337.70 -8.37 -42.18 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.18 Total: 5.47 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.20 Total: -3.57 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.13 Total: -57.19 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.81 -8.37 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267413126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.265 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds