Wall clock time and date at job start Mon Mar 30 2020 01:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 120.00209 * 2 1 4 4 C 1.52998 * 109.47010 * 270.00126 * 3 2 1 5 5 N 1.46499 * 109.47043 * 179.97438 * 4 3 2 6 6 C 1.36943 * 120.00108 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00078 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99804 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00220 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99608 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47216 * 90.00296 * 10 8 6 12 12 H 1.48507 * 109.46847 * 210.00259 * 10 8 6 13 13 H 1.48497 * 109.47424 * 330.00362 * 10 8 6 14 14 C 1.34776 * 120.00011 * 180.02562 * 2 1 3 15 15 O 1.21281 * 120.00259 * 180.02562 * 14 2 1 16 16 C 1.50706 * 119.99911 * 359.97438 * 14 2 1 17 17 C 1.52999 * 109.46925 * 180.02562 * 16 14 2 18 18 H 1.08997 * 109.64240 * 54.58726 * 17 16 14 19 19 C 1.53018 * 109.64420 * 293.94580 * 17 16 14 20 20 C 1.50066 * 110.14957 * 190.88018 * 19 17 16 21 21 C 1.29448 * 124.07460 * 17.13340 * 20 19 17 22 22 C 1.50064 * 124.07381 * 359.53155 * 21 20 19 23 23 C 1.53022 * 110.14741 * 17.13069 * 22 21 20 24 24 H 1.08994 * 109.46987 * 270.00103 * 1 2 3 25 25 H 1.09003 * 109.46510 * 30.00142 * 1 2 3 26 26 H 1.09005 * 109.46936 * 149.99670 * 1 2 3 27 27 H 1.09004 * 109.46883 * 29.99918 * 3 2 1 28 28 H 1.08996 * 109.46979 * 150.00187 * 3 2 1 29 29 H 1.08997 * 109.47310 * 299.99945 * 4 3 2 30 30 H 1.09000 * 109.47626 * 59.99973 * 4 3 2 31 31 H 0.97002 * 120.00410 * 0.02562 * 5 4 3 32 32 H 0.96997 * 120.00004 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.46550 * 60.00645 * 16 14 2 34 34 H 1.08995 * 109.47319 * 300.00936 * 16 14 2 35 35 H 1.08999 * 109.36080 * 311.08909 * 19 17 16 36 36 H 1.09002 * 109.35703 * 70.81039 * 19 17 16 37 37 H 1.08003 * 117.96587 * 197.15720 * 20 19 17 38 38 H 1.08001 * 117.96297 * 179.55424 * 21 20 19 39 39 H 1.09003 * 109.35913 * 256.92714 * 22 21 20 40 40 H 1.09002 * 109.36084 * 137.34080 * 22 21 20 41 41 H 1.09002 * 109.64212 * 190.88246 * 23 22 21 42 42 H 1.08997 * 109.64550 * 70.24845 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1846 2.9793 -1.4425 6 6 3.5273 3.5721 -2.6285 7 1 3.2576 3.1044 -3.5637 8 6 4.2205 4.7749 -2.6284 9 7 4.5487 5.3452 -1.4886 10 14 4.6873 5.5838 -4.2461 11 1 3.5980 6.4973 -4.6753 12 1 5.9418 6.3584 -4.0683 13 1 4.8933 4.5388 -5.2809 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0001 16 6 1.3854 -2.4723 -0.0005 17 6 2.3797 -3.6352 -0.0005 18 1 3.0699 -3.5272 0.8361 19 6 3.1585 -3.6461 -1.3176 20 6 3.9402 -4.9207 -1.4454 21 6 3.7124 -5.9846 -0.7440 22 6 2.6415 -6.0887 0.3021 23 6 1.6208 -4.9624 0.1253 24 1 -0.3633 0.0000 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 3.0416 0.9507 -1.9563 30 1 1.5002 1.8407 -1.9564 31 1 3.4272 3.3994 -0.6025 32 1 5.0334 6.1854 -1.4885 33 1 0.7585 -2.5298 -0.8903 34 1 0.7590 -2.5302 0.8896 35 1 2.4605 -3.5653 -2.1509 36 1 3.8453 -2.7999 -1.3382 37 1 4.7429 -4.9524 -2.1673 38 1 4.3319 -6.8511 -0.9224 39 1 3.0939 -6.0142 1.2910 40 1 2.1377 -7.0508 0.2090 41 1 0.9610 -4.9264 0.9922 42 1 1.0354 -5.1367 -0.7775 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267413126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:21 Heat of formation + Delta-G solvation = -44.412729 kcal Electronic energy + Delta-G solvation = -20198.908466 eV Core-core repulsion = 17177.997568 eV Total energy + Delta-G solvation = -3020.910898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18346 -39.22455 -37.33175 -36.05191 -33.93499 -33.21993 -31.58838 -30.21836 -28.23697 -27.27563 -25.50647 -24.09457 -23.31663 -22.03532 -20.08947 -19.21072 -18.85535 -17.92901 -17.24978 -16.87565 -16.56886 -16.39150 -15.46882 -15.38373 -15.22803 -14.92314 -14.58918 -14.36259 -13.94680 -13.74312 -13.55067 -13.26074 -13.09838 -13.06931 -12.93992 -12.84371 -12.74513 -12.39995 -12.31968 -12.14977 -11.89615 -11.60583 -11.43501 -11.00879 -10.99228 -10.62426 -9.84235 -9.63655 -9.09475 -8.00246 -5.31397 1.42696 1.44326 1.47424 1.55951 1.70047 2.04106 2.54202 3.32823 3.58063 3.74696 3.85034 4.04004 4.05560 4.18359 4.23841 4.27919 4.37754 4.44329 4.50328 4.54932 4.58973 4.72163 4.78080 4.78931 4.85205 4.93758 4.99070 5.02471 5.06905 5.09469 5.13829 5.26089 5.40214 5.40678 5.53204 5.57294 5.80301 6.10232 6.21313 6.48729 7.26498 7.27545 7.98863 8.24382 9.23222 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.003578 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.724088 B = 7822.785623 C = 8488.239410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.615 5.615 3 C 0.121 3.879 4 C 0.150 3.850 5 N -0.744 5.744 6 C -0.253 4.253 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.272 1.272 14 C 0.497 3.503 15 O -0.584 6.584 16 C -0.122 4.122 17 C -0.070 4.070 18 H 0.055 0.945 19 C -0.093 4.093 20 C -0.170 4.170 21 C -0.160 4.160 22 C -0.093 4.093 23 C -0.108 4.108 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.056 0.944 29 H -0.003 1.003 30 H 0.030 0.970 31 H 0.375 0.625 32 H 0.254 0.746 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 -23.197 5.074 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.348 5.348 3 C -0.003 4.003 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.197 1.197 14 C 0.288 3.712 15 O -0.464 6.464 16 C -0.162 4.162 17 C -0.089 4.089 18 H 0.074 0.926 19 C -0.130 4.130 20 C -0.189 4.189 21 C -0.178 4.178 22 C -0.130 4.130 23 C -0.145 4.145 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.015 0.985 30 H 0.047 0.953 31 H 0.207 0.793 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.430 -23.200 4.894 26.771 hybrid contribution 1.101 1.150 -0.663 1.724 sum -11.329 -22.050 4.231 25.148 Atomic orbital electron populations 1.22141 0.76522 1.04818 1.03638 1.47994 1.08777 1.04899 1.73120 1.21285 0.97278 0.85716 0.95994 1.20939 0.94150 0.86670 0.95970 1.42415 1.67674 1.23041 1.05597 1.19597 1.29288 1.02655 0.86922 0.90949 1.25648 1.01548 0.98784 1.00581 1.69818 1.45968 1.19862 1.26170 0.85066 0.77191 0.78212 0.78823 1.20643 1.21868 1.19696 1.21665 0.87932 0.86795 0.74843 1.90693 1.16575 1.87936 1.51233 1.21847 0.98820 0.88784 1.06715 1.20935 0.96269 0.94440 0.97247 0.92608 1.20555 0.98732 0.95724 0.97942 1.22141 1.00402 0.95320 1.00991 1.22276 0.99753 0.97760 0.97961 1.20520 0.95108 0.99882 0.97447 1.21663 0.97379 0.92117 1.03374 0.90282 0.90874 0.88198 0.88942 0.92587 0.98481 0.95258 0.79285 0.93723 0.86490 0.85603 0.90902 0.93098 0.88785 0.87209 0.90814 0.89124 0.89285 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 10.24 127.77 1.31 2.42 16 2 N -0.61 -16.72 2.87 -846.74 -2.43 -19.15 16 3 C 0.12 4.33 5.52 86.38 0.48 4.81 16 4 C 0.15 6.65 6.58 86.38 0.57 7.22 16 5 N -0.74 -40.67 5.60 -343.45 -1.92 -42.59 16 6 C -0.25 -14.97 9.99 84.03 0.84 -14.13 16 7 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 8 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 9 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 10 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 14 C 0.50 14.40 7.44 87.66 0.65 15.05 16 15 O -0.58 -23.30 13.68 -3.03 -0.04 -23.34 16 16 C -0.12 -2.12 3.73 29.85 0.11 -2.01 16 17 C -0.07 -1.41 1.87 -10.65 -0.02 -1.43 16 18 H 0.06 1.40 7.93 -2.39 -0.02 1.38 16 19 C -0.09 -2.31 5.05 29.66 0.15 -2.16 16 20 C -0.17 -3.88 9.80 27.03 0.27 -3.61 16 21 C -0.16 -2.93 9.80 27.03 0.27 -2.66 16 22 C -0.09 -1.29 6.12 29.66 0.18 -1.11 16 23 C -0.11 -1.41 5.31 30.73 0.16 -1.25 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 1.23 8.07 -2.39 -0.02 1.21 16 26 H 0.10 0.99 6.44 -2.38 -0.02 0.98 16 27 H 0.09 2.97 8.07 -2.38 -0.02 2.95 16 28 H 0.06 2.32 7.42 -2.39 -0.02 2.30 16 29 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.38 21.44 7.67 -92.71 -0.71 20.73 16 32 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.12 1.49 7.35 -2.39 -0.02 1.48 16 34 H 0.13 1.36 8.11 -2.39 -0.02 1.34 16 35 H 0.07 1.65 8.06 -2.39 -0.02 1.63 16 36 H 0.05 1.70 6.31 -2.39 -0.02 1.68 16 37 H 0.09 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 Total: -1.00 -76.71 337.70 3.61 -73.10 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.27 Total: 25.95 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 5.43 Total: -2.75 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -4.07 Total: -122.46 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.04 Total: -23.34 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -76.71 3.61 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267413126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.685 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds