Wall clock time and date at job start Mon Mar 30 2020 01:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.53000 * 109.46992 * 269.72138 * 3 2 1 5 5 N 1.46496 * 109.47378 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00443 * 180.02562 * 5 4 3 7 7 H 1.08006 * 120.00072 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00368 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99851 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99914 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47554 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47222 * 119.99662 * 10 8 6 13 13 H 1.48497 * 109.47153 * 239.99400 * 10 8 6 14 14 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 15 15 O 1.21284 * 119.99754 * 180.27842 * 14 2 1 16 16 C 1.50696 * 120.00137 * 0.28058 * 14 2 1 17 17 H 1.08999 * 115.54731 * 34.41565 * 16 14 2 18 18 C 1.52998 * 117.50094 * 248.74535 * 16 14 2 19 19 C 1.52997 * 117.50255 * 180.08326 * 16 14 2 20 20 H 1.09000 * 117.49699 * 0.02562 * 19 16 14 21 21 C 1.52991 * 117.50198 * 214.98016 * 19 16 14 22 22 C 1.53781 * 113.61761 * 157.49844 * 21 19 16 23 23 C 1.53776 * 87.08250 * 220.02031 * 22 21 19 24 24 C 1.53775 * 87.08491 * 25.42832 * 23 22 21 25 25 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 26 26 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 27 27 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 28 28 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 29 29 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 30 30 H 1.09000 * 109.47214 * 300.00285 * 4 3 2 31 31 H 1.09008 * 109.47142 * 59.99450 * 4 3 2 32 32 H 0.97001 * 119.99484 * 0.02562 * 5 4 3 33 33 H 0.97000 * 119.99789 * 180.02562 * 9 8 6 34 34 H 1.09001 * 117.49663 * 0.02562 * 18 16 14 35 35 H 1.08999 * 117.49876 * 144.99317 * 18 16 14 36 36 H 1.08996 * 112.85161 * 288.80279 * 21 19 16 37 37 H 1.09003 * 113.61199 * 334.56849 * 22 21 19 38 38 H 1.08997 * 113.61591 * 105.46729 * 22 21 19 39 39 H 1.08999 * 113.61360 * 270.88033 * 23 22 21 40 40 H 1.09004 * 113.69700 * 139.99376 * 23 22 21 41 41 H 1.08997 * 113.62088 * 220.02258 * 24 23 22 42 42 H 1.09007 * 113.69118 * 89.12466 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4586 1.7069 -1.4425 5 7 3.1906 2.9758 -1.4426 6 6 3.5374 3.5662 -2.6284 7 1 3.2709 3.0965 -3.5638 8 6 4.2315 4.7684 -2.6285 9 7 4.5559 5.3411 -1.4887 10 14 4.7039 5.5740 -4.2463 11 1 4.2258 4.7357 -5.3750 12 1 4.0810 6.9194 -4.3298 13 1 6.1811 5.7071 -4.3202 14 6 2.1388 -1.1672 0.0057 15 8 3.3517 -1.1672 0.0108 16 6 1.3854 -2.4723 0.0058 17 1 0.4501 -2.4751 -0.5540 18 6 1.4528 -3.3270 1.2730 19 6 2.2073 -3.7627 0.0144 20 1 3.2932 -3.6676 0.0205 21 6 1.6534 -4.9584 -0.7628 22 6 2.7273 -5.9833 -1.1641 23 6 1.9939 -6.1074 -2.5100 24 6 1.4663 -4.6840 -2.2643 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6063 2.0296 0.5094 29 1 3.1478 1.1396 0.5181 30 1 3.0498 0.9459 -1.9520 31 1 1.5083 1.8359 -1.9607 32 1 3.4297 3.3979 -0.6025 33 1 5.0405 6.1813 -1.4888 34 1 2.0418 -2.9451 2.1068 35 1 0.5619 -3.8921 1.5469 36 1 0.7790 -5.4035 -0.2881 37 1 3.7271 -5.5575 -1.2493 38 1 2.7043 -6.8959 -0.5685 39 1 1.2131 -6.8679 -2.5132 40 1 2.6622 -6.1834 -3.3677 41 1 0.4252 -4.5476 -2.5569 42 1 2.1203 -3.9019 -2.6500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267439780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:00 Heat of formation + Delta-G solvation = 18.190930 kcal Electronic energy + Delta-G solvation = -20031.327440 eV Core-core repulsion = 17013.131241 eV Total energy + Delta-G solvation = -3018.196200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28957 -38.92517 -36.25718 -35.41505 -34.27670 -31.36929 -28.47602 -26.84850 -26.17406 -25.79406 -24.49198 -22.86735 -21.47571 -21.02800 -19.58356 -18.85980 -17.29768 -17.04770 -16.02708 -15.70833 -15.36281 -15.13017 -14.44519 -14.06514 -13.65492 -13.41158 -13.14954 -12.88481 -12.87453 -12.69714 -12.61449 -12.48651 -12.21198 -11.94674 -11.24387 -11.08897 -10.98716 -10.86992 -10.84319 -10.70992 -10.63663 -10.13243 -10.04556 -9.97256 -9.75409 -9.55292 -8.84701 -8.45343 -6.89905 -5.73332 -3.02327 2.59832 3.09255 3.46187 3.51605 3.54162 3.68039 4.26703 4.40518 4.47657 4.62628 4.64836 4.70036 4.83373 4.89567 5.04147 5.14309 5.24151 5.42220 5.45129 5.49916 5.52726 5.57382 5.61362 5.66086 5.70423 5.73232 5.76872 5.81194 5.87990 6.00459 6.07981 6.12261 6.15882 6.33220 6.61627 6.79035 6.95797 7.56049 7.73744 8.36398 8.45480 9.56163 10.12659 10.47941 11.49777 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.003547 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.399341 B = 7892.866850 C = 8523.146625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.609 5.609 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.539 3.461 15 O -0.534 6.534 16 C -0.183 4.183 17 H 0.122 0.878 18 C -0.151 4.151 19 C -0.108 4.108 20 H 0.118 0.882 21 C -0.082 4.082 22 C -0.133 4.133 23 C -0.145 4.145 24 C -0.135 4.135 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.022 0.978 31 H 0.018 0.982 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 -22.169 4.634 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.327 3.673 15 O -0.411 6.411 16 C -0.204 4.204 17 H 0.140 0.860 18 C -0.188 4.188 19 C -0.127 4.127 20 H 0.136 0.864 21 C -0.100 4.100 22 C -0.170 4.170 23 C -0.182 4.182 24 C -0.172 4.172 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.953 -22.119 4.454 25.081 hybrid contribution 0.159 0.842 -0.657 1.079 sum -10.794 -21.278 3.797 24.159 Atomic orbital electron populations 1.21796 0.79698 1.02920 1.01904 1.47713 1.06936 1.06174 1.73413 1.21729 0.97445 0.83123 0.99158 1.20904 0.95051 0.89351 0.93232 1.42223 1.67124 1.21604 1.06596 1.19262 1.29207 1.02314 0.85994 0.91158 1.24752 1.01314 0.98064 0.96952 1.69674 1.45217 1.19467 1.23898 0.86086 0.77938 0.79104 0.82902 1.20553 1.21846 1.21806 1.19662 0.87378 0.84297 0.75996 1.90720 1.13822 1.87114 1.49407 1.22260 1.02481 0.90619 1.05011 0.86027 1.23070 1.02868 1.01564 0.91314 1.22416 0.99194 0.92345 0.98736 0.86378 1.22179 0.98622 0.94334 0.94914 1.22947 0.98434 0.98830 0.96813 1.22815 1.00142 0.97360 0.97913 1.22936 1.01467 0.97346 0.95497 0.92591 0.91157 0.90894 0.90497 0.89810 0.95989 0.96446 0.78282 0.93551 0.88368 0.88006 0.89127 0.89767 0.91571 0.90401 0.91424 0.91647 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.05 59.85 0.60 1.43 16 2 N -0.61 -9.06 2.87 -181.57 -0.52 -9.59 16 3 C 0.11 1.95 5.57 -4.04 -0.02 1.92 16 4 C 0.14 3.16 6.58 -4.04 -0.03 3.14 16 5 N -0.73 -19.67 5.60 -59.91 -0.34 -20.00 16 6 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 7 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 10 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 C 0.54 8.47 7.46 -10.99 -0.08 8.39 16 15 O -0.53 -10.76 15.84 5.55 0.09 -10.67 16 16 C -0.18 -2.03 4.31 -91.78 -0.40 -2.42 16 17 H 0.12 1.12 7.27 -51.93 -0.38 0.74 16 18 C -0.15 -1.38 9.93 -26.70 -0.26 -1.65 16 19 C -0.11 -1.13 5.06 -90.59 -0.46 -1.59 16 20 H 0.12 1.50 7.50 -51.93 -0.39 1.11 16 21 C -0.08 -0.69 3.88 -89.81 -0.35 -1.03 16 22 C -0.13 -1.07 7.63 -25.92 -0.20 -1.27 16 23 C -0.14 -1.11 8.08 -25.92 -0.21 -1.32 16 24 C -0.14 -1.18 7.45 -25.92 -0.19 -1.37 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.55 6.64 -51.93 -0.34 0.21 16 27 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 28 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 29 H 0.08 1.68 7.42 -51.93 -0.39 1.29 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 33 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.09 0.64 8.07 -51.93 -0.42 0.22 16 37 H 0.08 0.74 7.98 -51.93 -0.41 0.33 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -34.17 345.58 -8.94 -43.11 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.23 Total: 5.65 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.84 Total: -3.43 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.13 Total: -57.92 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.17 -8.94 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267439780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.303 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds