Wall clock time and date at job start Mon Mar 30 2020 01:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.53000 * 109.46992 * 269.72138 * 3 2 1 5 5 N 1.46496 * 109.47378 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00443 * 180.02562 * 5 4 3 7 7 H 1.08006 * 120.00072 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00368 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99851 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99914 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47554 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47222 * 119.99662 * 10 8 6 13 13 H 1.48497 * 109.47153 * 239.99400 * 10 8 6 14 14 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 15 15 O 1.21284 * 119.99754 * 180.27842 * 14 2 1 16 16 C 1.50696 * 120.00137 * 0.28058 * 14 2 1 17 17 H 1.08999 * 115.54731 * 34.41565 * 16 14 2 18 18 C 1.52998 * 117.50094 * 248.74535 * 16 14 2 19 19 C 1.52997 * 117.50255 * 180.08326 * 16 14 2 20 20 H 1.09000 * 117.49699 * 0.02562 * 19 16 14 21 21 C 1.52991 * 117.50198 * 214.98016 * 19 16 14 22 22 C 1.53781 * 113.61761 * 157.49844 * 21 19 16 23 23 C 1.53776 * 87.08250 * 220.02031 * 22 21 19 24 24 C 1.53775 * 87.08491 * 25.42832 * 23 22 21 25 25 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 26 26 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 27 27 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 28 28 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 29 29 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 30 30 H 1.09000 * 109.47214 * 300.00285 * 4 3 2 31 31 H 1.09008 * 109.47142 * 59.99450 * 4 3 2 32 32 H 0.97001 * 119.99484 * 0.02562 * 5 4 3 33 33 H 0.97000 * 119.99789 * 180.02562 * 9 8 6 34 34 H 1.09001 * 117.49663 * 0.02562 * 18 16 14 35 35 H 1.08999 * 117.49876 * 144.99317 * 18 16 14 36 36 H 1.08996 * 112.85161 * 288.80279 * 21 19 16 37 37 H 1.09003 * 113.61199 * 334.56849 * 22 21 19 38 38 H 1.08997 * 113.61591 * 105.46729 * 22 21 19 39 39 H 1.08999 * 113.61360 * 270.88033 * 23 22 21 40 40 H 1.09004 * 113.69700 * 139.99376 * 23 22 21 41 41 H 1.08997 * 113.62088 * 220.02258 * 24 23 22 42 42 H 1.09007 * 113.69118 * 89.12466 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4586 1.7069 -1.4425 5 7 3.1906 2.9758 -1.4426 6 6 3.5374 3.5662 -2.6284 7 1 3.2709 3.0965 -3.5638 8 6 4.2315 4.7684 -2.6285 9 7 4.5559 5.3411 -1.4887 10 14 4.7039 5.5740 -4.2463 11 1 4.2258 4.7357 -5.3750 12 1 4.0810 6.9194 -4.3298 13 1 6.1811 5.7071 -4.3202 14 6 2.1388 -1.1672 0.0057 15 8 3.3517 -1.1672 0.0108 16 6 1.3854 -2.4723 0.0058 17 1 0.4501 -2.4751 -0.5540 18 6 1.4528 -3.3270 1.2730 19 6 2.2073 -3.7627 0.0144 20 1 3.2932 -3.6676 0.0205 21 6 1.6534 -4.9584 -0.7628 22 6 2.7273 -5.9833 -1.1641 23 6 1.9939 -6.1074 -2.5100 24 6 1.4663 -4.6840 -2.2643 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6063 2.0296 0.5094 29 1 3.1478 1.1396 0.5181 30 1 3.0498 0.9459 -1.9520 31 1 1.5083 1.8359 -1.9607 32 1 3.4297 3.3979 -0.6025 33 1 5.0405 6.1813 -1.4888 34 1 2.0418 -2.9451 2.1068 35 1 0.5619 -3.8921 1.5469 36 1 0.7790 -5.4035 -0.2881 37 1 3.7271 -5.5575 -1.2493 38 1 2.7043 -6.8959 -0.5685 39 1 1.2131 -6.8679 -2.5132 40 1 2.6622 -6.1834 -3.3677 41 1 0.4252 -4.5476 -2.5569 42 1 2.1203 -3.9019 -2.6500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267439780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:59 Heat of formation + Delta-G solvation = -3.249332 kcal Electronic energy + Delta-G solvation = -20032.257160 eV Core-core repulsion = 17013.131241 eV Total energy + Delta-G solvation = -3019.125919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35451 -39.78745 -37.56928 -36.50469 -36.09300 -33.41161 -30.17173 -27.74406 -27.20161 -26.44639 -26.05777 -24.42379 -22.92434 -21.96575 -20.27103 -20.02823 -19.23954 -18.27549 -17.32398 -16.80135 -16.42631 -16.26781 -16.02443 -15.46213 -15.17111 -15.11393 -14.64333 -14.26651 -13.90454 -13.41519 -13.32388 -13.30047 -13.17968 -13.11043 -12.91944 -12.79695 -12.62813 -12.37346 -12.12120 -11.90257 -11.87828 -11.51822 -11.36087 -11.03063 -10.94252 -10.83953 -10.62176 -9.73297 -9.11140 -8.01305 -5.32705 1.43356 1.45334 1.46434 1.56511 1.93055 2.52950 2.82153 3.31771 3.42042 3.64973 3.76034 3.87665 3.96973 4.02754 4.05653 4.14879 4.18841 4.20616 4.29552 4.37239 4.50626 4.54487 4.71374 4.80858 4.87881 4.90475 4.92199 4.93947 4.96433 5.03470 5.07595 5.12445 5.13273 5.28391 5.39267 5.40004 5.52176 5.69051 6.20207 6.39236 7.15317 7.26154 7.96803 8.23112 9.22332 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.003547 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.399341 B = 7892.866850 C = 8523.146625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.121 3.879 4 C 0.150 3.850 5 N -0.743 5.743 6 C -0.253 4.253 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.292 1.292 14 C 0.528 3.472 15 O -0.593 6.593 16 C -0.185 4.185 17 H 0.151 0.849 18 C -0.126 4.126 19 C -0.118 4.118 20 H 0.083 0.917 21 C -0.072 4.072 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.141 4.141 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.056 0.944 30 H -0.005 1.005 31 H 0.030 0.970 32 H 0.376 0.624 33 H 0.254 0.746 34 H 0.085 0.915 35 H 0.141 0.859 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.320 -23.647 4.417 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.340 5.340 3 C -0.003 4.003 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.808 3.192 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.219 1.219 14 C 0.318 3.682 15 O -0.474 6.474 16 C -0.206 4.206 17 H 0.168 0.832 18 C -0.164 4.164 19 C -0.137 4.137 20 H 0.102 0.898 21 C -0.090 4.090 22 C -0.175 4.175 23 C -0.177 4.177 24 C -0.178 4.178 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.013 0.987 31 H 0.048 0.952 32 H 0.208 0.792 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.159 0.841 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.725 -23.628 4.232 27.651 hybrid contribution 1.016 1.269 -0.575 1.724 sum -12.709 -22.360 3.657 25.978 Atomic orbital electron populations 1.22138 0.76368 1.05225 1.03179 1.47837 1.08876 1.04678 1.72616 1.21366 0.97340 0.85379 0.96177 1.20932 0.94199 0.86729 0.95884 1.42404 1.67660 1.22934 1.05670 1.19630 1.29240 1.02710 0.86878 0.90972 1.25656 1.01500 0.98742 1.00646 1.69828 1.46001 1.19820 1.26132 0.84991 0.77222 0.78099 0.78910 1.19150 1.21200 1.21854 1.20590 0.87052 0.85951 0.74586 1.90692 1.16602 1.88037 1.52036 1.22249 1.02919 0.88032 1.07355 0.83172 1.23204 1.03474 0.99845 0.89831 1.22391 0.97631 0.93042 1.00596 0.89850 1.22220 0.99302 0.93211 0.94244 1.22953 0.97625 0.99376 0.97581 1.22834 1.00375 0.97163 0.97329 1.22917 1.01696 0.97197 0.95997 0.91746 0.87892 0.89692 0.88430 0.92564 0.98680 0.95170 0.79224 0.93693 0.89650 0.84085 0.86358 0.91717 0.90094 0.88401 0.92030 0.90207 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 10.05 127.77 1.28 2.56 16 2 N -0.61 -17.71 2.87 -846.76 -2.43 -20.14 16 3 C 0.12 4.45 5.57 86.38 0.48 4.93 16 4 C 0.15 6.79 6.58 86.38 0.57 7.36 16 5 N -0.74 -41.00 5.60 -343.45 -1.92 -42.92 16 6 C -0.25 -15.07 9.99 84.04 0.84 -14.23 16 7 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 8 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 9 N -0.97 -61.09 13.06 21.65 0.28 -60.80 16 10 Si 0.98 47.64 29.55 68.60 2.03 49.66 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 14 C 0.53 16.76 7.46 87.66 0.65 17.42 16 15 O -0.59 -25.38 15.84 -3.04 -0.05 -25.42 16 16 C -0.18 -3.79 4.31 -11.54 -0.05 -3.84 16 17 H 0.15 2.21 7.27 -2.39 -0.02 2.20 16 18 C -0.13 -1.99 9.93 30.62 0.30 -1.68 16 19 C -0.12 -2.37 5.06 -10.77 -0.05 -2.43 16 20 H 0.08 2.28 7.50 -2.39 -0.02 2.26 16 21 C -0.07 -1.04 3.88 -10.27 -0.04 -1.08 16 22 C -0.14 -2.07 7.63 31.12 0.24 -1.84 16 23 C -0.14 -1.91 8.08 31.12 0.25 -1.66 16 24 C -0.14 -2.25 7.45 31.12 0.23 -2.02 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.10 1.18 6.64 -2.39 -0.02 1.16 16 27 H 0.08 1.33 7.89 -2.39 -0.02 1.31 16 28 H 0.10 3.16 7.89 -2.39 -0.02 3.14 16 29 H 0.06 2.37 7.42 -2.39 -0.02 2.36 16 30 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.38 21.58 7.67 -92.71 -0.71 20.87 16 33 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.14 1.17 8.13 -2.39 -0.02 1.15 16 36 H 0.12 1.13 8.07 -2.39 -0.02 1.11 16 37 H 0.06 1.21 7.98 -2.39 -0.02 1.19 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.23 8.10 -2.38 -0.02 1.21 16 Total: -1.00 -77.05 345.58 3.36 -73.69 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.28 Total: 26.34 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.18 Total: -0.40 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -4.07 Total: -123.87 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -77.05 3.36 -73.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267439780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.439 kcal (2) G-P(sol) polarization free energy of solvation -77.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds