Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99569 * 2 1 4 4 C 1.53008 * 109.47032 * 125.00415 * 3 2 1 5 5 C 1.50697 * 109.46871 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00349 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99696 * 179.97438 * 5 4 3 8 8 C 1.47028 * 125.64696 * 359.97335 * 7 5 4 9 9 C 1.54321 * 107.26779 * 178.98876 * 8 7 5 10 10 C 1.55158 * 102.94607 * 337.80881 * 9 8 7 11 11 H 1.09004 * 111.00332 * 277.39056 * 10 9 8 12 12 C 1.52999 * 111.00704 * 153.57679 * 10 9 8 13 13 N 1.46502 * 109.47002 * 66.45531 * 12 10 9 14 14 C 1.46501 * 120.00023 * 90.00198 * 13 12 10 15 15 C 1.36933 * 119.99879 * 270.27660 * 13 12 10 16 16 H 1.07997 * 120.00529 * 22.54623 * 15 13 12 17 17 C 1.38819 * 120.00095 * 202.54547 * 15 13 12 18 18 N 1.31614 * 119.99584 * 13.50203 * 17 15 13 19 19 Si 1.86792 * 120.00276 * 193.49955 * 17 15 13 20 20 H 1.48504 * 109.46958 * 89.99894 * 19 17 15 21 21 H 1.48493 * 109.47266 * 210.00001 * 19 17 15 22 22 H 1.48498 * 109.47343 * 330.00195 * 19 17 15 23 23 C 1.47427 * 125.65086 * 180.02562 * 7 5 4 24 24 H 1.08001 * 120.00305 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.99619 * 180.02562 * 1 2 3 26 26 H 1.07989 * 120.00696 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47237 * 5.00141 * 3 2 1 28 28 H 1.08998 * 109.46992 * 245.00015 * 3 2 1 29 29 H 1.08995 * 109.46610 * 59.99880 * 4 3 2 30 30 H 1.08996 * 109.46570 * 300.00064 * 4 3 2 31 31 H 1.08998 * 109.87919 * 59.57247 * 8 7 5 32 32 H 1.08995 * 109.88409 * 298.40188 * 8 7 5 33 33 H 1.09004 * 110.72031 * 219.44480 * 9 8 7 34 34 H 1.08998 * 110.72593 * 96.17319 * 9 8 7 35 35 H 1.08999 * 109.46923 * 306.45439 * 12 10 9 36 36 H 1.09000 * 109.47320 * 186.45313 * 12 10 9 37 37 H 1.08996 * 109.47090 * 95.13660 * 14 13 12 38 38 H 1.09008 * 109.47147 * 215.13710 * 14 13 12 39 39 H 1.09000 * 109.47090 * 335.12989 * 14 13 12 40 40 H 0.97005 * 120.00113 * 180.02562 * 18 17 15 41 41 H 1.09000 * 110.37037 * 85.23922 * 23 7 5 42 42 H 1.09002 * 110.36078 * 322.92234 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.7889 2.6381 1.1812 6 8 3.5702 3.4645 0.3210 7 7 4.7054 2.8871 2.1376 8 6 5.0666 1.9785 3.2356 9 6 6.1709 2.6728 4.0602 10 6 6.7694 3.6899 3.0529 11 1 7.5007 3.2108 2.4018 12 6 7.3878 4.8846 3.7817 13 7 8.5540 4.4387 4.5481 14 6 9.8819 4.4415 3.9293 15 6 8.4020 4.0139 5.8410 16 1 7.4410 3.6600 6.1837 17 6 9.4833 4.0382 6.7112 18 7 10.5715 4.7052 6.3901 19 14 9.3939 3.1242 8.3378 20 1 9.8907 1.7368 8.1540 21 1 10.2340 3.8215 9.3443 22 1 7.9859 3.0875 8.8082 23 6 5.5110 4.1161 2.2565 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8501 -0.9351 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 3.7400 0.5067 1.0919 30 1 2.4773 1.2356 2.1130 31 1 5.4417 1.0386 2.8308 32 1 4.1960 1.7926 3.8645 33 1 6.9262 1.9532 4.3763 34 1 5.7437 3.1880 4.9205 35 1 6.6517 5.3176 4.4591 36 1 7.6967 5.6344 3.0534 37 1 10.3984 5.3676 4.1817 38 1 10.4569 3.5924 4.2990 39 1 9.7785 4.3665 2.8468 40 1 11.3273 4.7219 6.9980 41 1 4.9580 4.8809 2.8018 42 1 5.7926 4.4819 1.2691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267577468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = -19.676025 kcal Electronic energy + Delta-G solvation = -20243.968925 eV Core-core repulsion = 17224.130691 eV Total energy + Delta-G solvation = -3019.838234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11920 -39.01207 -37.07941 -36.24922 -33.92306 -32.39235 -31.33623 -30.28142 -27.95562 -27.33142 -25.33381 -23.61416 -23.09436 -21.04496 -20.65038 -20.02120 -18.73849 -18.02971 -17.37849 -16.84300 -16.49725 -16.01542 -15.74241 -15.25391 -15.11225 -14.64847 -14.45643 -14.38162 -14.00666 -13.71520 -13.31473 -13.24963 -13.05416 -12.95760 -12.79958 -12.59292 -12.32065 -12.14737 -12.01503 -11.96262 -11.88526 -11.69893 -11.56060 -11.36556 -10.93824 -10.57215 -10.20481 -9.64528 -8.71720 -7.76196 -5.24319 1.40307 1.50786 1.51529 1.59805 1.61835 2.05316 2.55872 3.36530 3.42558 3.68117 3.79406 3.96669 4.00125 4.14015 4.18210 4.36364 4.38280 4.45745 4.47474 4.60971 4.65749 4.72126 4.86508 4.87838 4.90394 4.94566 5.07167 5.09010 5.13469 5.20706 5.29598 5.33832 5.44051 5.51706 5.70573 5.76222 5.77275 5.92459 6.38613 6.56258 7.13720 7.20943 7.92994 8.38418 9.27834 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033510 B = 0.003596 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.373508 B = 7783.602660 C = 8397.887483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C -0.077 4.077 4 C -0.122 4.122 5 C 0.518 3.482 6 O -0.592 6.592 7 N -0.619 5.619 8 C 0.104 3.896 9 C -0.109 4.109 10 C -0.106 4.106 11 H 0.067 0.933 12 C 0.161 3.839 13 N -0.615 5.615 14 C 0.176 3.824 15 C -0.246 4.246 16 H 0.082 0.918 17 C -0.061 4.061 18 N -0.945 5.945 19 Si 0.964 3.036 20 H -0.287 1.287 21 H -0.303 1.303 22 H -0.264 1.264 23 C 0.115 3.885 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.002 0.998 38 H 0.015 0.985 39 H 0.027 0.973 40 H 0.244 0.756 41 H 0.067 0.933 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.160 -10.442 -8.937 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.176 4.176 3 C -0.115 4.115 4 C -0.161 4.161 5 C 0.309 3.691 6 O -0.474 6.474 7 N -0.352 5.352 8 C -0.018 4.018 9 C -0.147 4.147 10 C -0.128 4.128 11 H 0.086 0.914 12 C 0.034 3.966 13 N -0.338 5.338 14 C 0.031 3.969 15 C -0.376 4.376 16 H 0.100 0.900 17 C -0.255 4.255 18 N -0.592 5.592 19 Si 0.793 3.207 20 H -0.215 1.215 21 H -0.230 1.230 22 H -0.188 1.188 23 C -0.009 4.009 24 H 0.111 0.889 25 H 0.130 0.870 26 H 0.143 0.857 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.020 0.980 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.194 -10.001 -9.341 21.202 hybrid contribution 0.707 0.029 0.937 1.174 sum -15.487 -9.972 -8.404 20.247 Atomic orbital electron populations 1.24047 0.96008 1.02506 1.00497 1.22984 0.96221 0.98000 1.00429 1.20453 0.97546 0.95939 0.97586 1.21625 0.98904 0.93728 1.01830 1.21120 0.78807 0.89869 0.79270 1.90669 1.67318 1.50411 1.38988 1.48736 1.38876 1.19360 1.28195 1.22255 0.98679 0.93153 0.87728 1.22486 0.96755 0.98224 0.97231 1.22839 0.94949 0.98351 0.96626 0.91438 1.20744 0.88963 0.93201 0.93667 1.44089 1.03093 1.75836 1.10746 1.20520 0.86103 0.98350 0.91946 1.19598 0.96885 1.33977 0.87133 0.89992 1.25801 0.97632 1.00916 1.01170 1.70251 1.06291 1.44753 1.37935 0.85296 0.77780 0.77891 0.79717 1.21455 1.23032 1.18821 1.22146 0.91281 0.87500 0.99945 0.88907 0.86955 0.85679 0.92300 0.91593 0.86637 0.86942 0.89647 0.89253 0.90662 0.91329 0.93317 0.93755 0.98006 0.96589 0.95451 0.94635 0.91438 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 14.32 67.78 0.97 -1.53 16 2 C -0.16 -2.18 9.52 25.65 0.24 -1.94 16 3 C -0.08 -1.40 4.95 29.85 0.15 -1.26 16 4 C -0.12 -2.07 4.87 29.85 0.15 -1.92 16 5 C 0.52 13.65 7.85 87.66 0.69 14.33 16 6 O -0.59 -20.54 16.24 -3.03 -0.05 -20.59 16 7 N -0.62 -15.87 3.33 -811.81 -2.70 -18.57 16 8 C 0.10 2.17 6.49 86.73 0.56 2.74 16 9 C -0.11 -3.06 5.12 31.78 0.16 -2.90 16 10 C -0.11 -3.30 3.29 -9.41 -0.03 -3.33 16 11 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 12 C 0.16 6.09 5.18 86.38 0.45 6.54 16 13 N -0.61 -29.24 2.87 -726.93 -2.09 -31.33 16 14 C 0.18 8.56 8.98 127.77 1.15 9.71 16 15 C -0.25 -12.59 8.98 84.04 0.75 -11.84 16 16 H 0.08 3.94 6.67 -2.91 -0.02 3.92 16 17 C -0.06 -3.31 5.09 84.86 0.43 -2.88 16 18 N -0.94 -55.45 10.73 21.65 0.23 -55.22 16 19 Si 0.96 43.61 29.57 68.60 2.03 45.64 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 C 0.11 3.29 6.38 86.85 0.55 3.85 16 24 H 0.09 1.25 7.84 -2.91 -0.02 1.22 16 25 H 0.11 1.09 8.06 -2.91 -0.02 1.07 16 26 H 0.13 1.32 8.06 -2.92 -0.02 1.29 16 27 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 28 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 29 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.07 2.04 7.39 -2.39 -0.02 2.02 16 35 H 0.05 1.85 8.01 -2.39 -0.02 1.83 16 36 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 37 H 0.00 0.09 7.36 -2.39 -0.02 0.07 16 38 H 0.02 0.82 7.32 -2.38 -0.02 0.80 16 39 H 0.03 1.13 8.03 -2.39 -0.02 1.11 16 40 H 0.24 14.07 8.31 -92.70 -0.77 13.30 16 41 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 42 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 Total: -1.00 -66.05 340.95 4.61 -61.45 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.96 Total: 9.05 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 6.22 Total: 9.56 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.56 Total: -105.11 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.05 Total: -20.59 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -66.05 4.61 -61.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267577468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.771 kcal (2) G-P(sol) polarization free energy of solvation -66.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds