Wall clock time and date at job start Mon Mar 30 2020 00:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99982 * 2 1 4 4 N 1.34769 * 119.99967 * 179.97438 * 2 1 3 5 5 C 1.46931 * 120.63204 * 5.46148 * 4 2 1 6 6 C 1.53188 * 108.77802 * 233.63016 * 5 4 2 7 7 C 1.53040 * 109.31614 * 305.36651 * 6 5 4 8 8 N 1.46497 * 109.46453 * 181.38557 * 7 6 5 9 9 C 1.36937 * 119.99854 * 303.90082 * 8 7 6 10 10 H 1.08004 * 120.00030 * 40.32515 * 9 8 7 11 11 C 1.38817 * 119.99969 * 220.33297 * 9 8 7 12 12 N 1.31611 * 119.99821 * 213.10587 * 11 9 8 13 13 Si 1.86801 * 119.99769 * 32.82963 * 11 9 8 14 14 H 1.48500 * 109.47116 * 90.80594 * 13 11 9 15 15 H 1.48495 * 109.46648 * 210.80589 * 13 11 9 16 16 H 1.48497 * 109.47005 * 330.80303 * 13 11 9 17 17 C 1.46497 * 120.00060 * 123.89199 * 8 7 6 18 18 C 1.52999 * 109.47449 * 272.01868 * 17 8 7 19 19 C 1.52994 * 117.49836 * 243.62362 * 18 17 8 20 20 C 1.52997 * 60.00209 * 252.50991 * 19 18 17 21 21 C 1.53038 * 109.52543 * 61.36782 * 7 6 5 22 22 C 1.46928 * 120.63159 * 185.48709 * 4 2 1 23 23 H 1.09003 * 109.47295 * 186.05893 * 1 2 3 24 24 H 1.09008 * 109.47546 * 306.06055 * 1 2 3 25 25 H 1.08998 * 109.47313 * 66.05500 * 1 2 3 26 26 H 1.09005 * 109.58068 * 113.84041 * 5 4 2 27 27 H 1.08999 * 109.70194 * 353.49149 * 5 4 2 28 28 H 1.09000 * 109.49831 * 185.41395 * 6 5 4 29 29 H 1.08997 * 109.52144 * 65.33376 * 6 5 4 30 30 H 1.09001 * 109.46084 * 301.35945 * 7 6 5 31 31 H 0.96997 * 120.00179 * 179.97438 * 12 11 9 32 32 H 1.09003 * 109.47065 * 32.02515 * 17 8 7 33 33 H 1.09006 * 109.46920 * 152.01873 * 17 8 7 34 34 H 1.09001 * 115.55066 * 29.33397 * 18 17 8 35 35 H 1.09004 * 117.50276 * 359.97438 * 19 18 17 36 36 H 1.09001 * 117.49965 * 145.02530 * 19 18 17 37 37 H 1.08997 * 117.50224 * 252.51142 * 20 19 18 38 38 H 1.09007 * 117.49993 * 107.48639 * 20 19 18 39 39 H 1.09007 * 109.49311 * 58.58518 * 21 7 6 40 40 H 1.09004 * 109.50035 * 178.67372 * 21 7 6 41 41 H 1.08997 * 109.58796 * 246.15660 * 22 4 2 42 42 H 1.08999 * 109.58406 * 6.44300 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 1.4652 -2.4448 -0.1192 6 6 1.8766 -3.3514 1.0450 7 6 3.4010 -3.4847 1.0687 8 7 3.7961 -4.3777 2.1608 9 6 3.4029 -4.1055 3.4439 10 1 2.4048 -3.7407 3.6370 11 6 4.2871 -4.2984 4.4965 12 7 3.8367 -4.6798 5.6729 13 14 6.1171 -4.0242 4.2411 14 1 6.4562 -2.6148 4.5634 15 1 6.8828 -4.9335 5.1311 16 1 6.4671 -4.3063 2.8258 17 6 4.6116 -5.5618 1.8801 18 6 3.6986 -6.7389 1.5310 19 6 3.7126 -7.9465 2.4703 20 6 4.3653 -8.0435 1.0899 21 6 4.0316 -2.1069 1.2832 22 6 3.6450 -1.1862 0.1214 23 1 -0.3634 -1.0219 0.1085 24 1 -0.3634 0.6050 0.8308 25 1 -0.3634 0.4171 -0.9392 26 1 1.7257 -2.9222 -1.0639 27 1 0.3902 -2.2686 -0.0831 28 1 1.4273 -4.3361 0.9157 29 1 1.5349 -2.9161 1.9840 30 1 3.7442 -3.8974 0.1200 31 1 4.4545 -4.8149 6.4083 32 1 5.2753 -5.3552 1.0405 33 1 5.2053 -5.8109 2.7597 34 1 2.7499 -6.4754 1.0635 35 1 4.3725 -7.9027 3.3367 36 1 2.7728 -8.4778 2.6210 37 1 3.8550 -8.6384 0.3325 38 1 5.4544 -8.0631 1.0484 39 1 3.6694 -1.6829 2.2198 40 1 5.1165 -2.2055 1.3235 41 1 4.0832 -1.5610 -0.8035 42 1 4.0087 -0.1772 0.3155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269617214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:50 Heat of formation + Delta-G solvation = -2.576514 kcal Electronic energy + Delta-G solvation = -21415.433259 eV Core-core repulsion = 18396.336515 eV Total energy + Delta-G solvation = -3019.096744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11342 -39.26223 -37.98924 -36.20328 -34.00870 -32.74767 -31.89134 -30.05918 -27.99752 -26.43721 -24.08733 -23.69899 -23.07987 -21.53585 -21.41007 -19.98402 -18.51684 -18.01622 -16.92701 -16.74104 -16.49132 -16.36034 -15.92575 -15.32988 -15.01532 -14.85909 -14.51256 -14.47401 -14.21197 -13.66833 -13.51117 -13.44965 -12.99350 -12.92438 -12.81597 -12.63194 -12.34938 -12.20455 -12.11568 -11.95941 -11.82105 -11.40979 -11.28568 -10.97784 -10.74786 -10.57439 -10.48795 -9.61166 -8.60028 -8.21578 -5.46322 1.31726 1.42617 1.47392 1.63870 2.14195 2.46304 2.94418 3.11918 3.43902 3.71281 3.94877 4.04177 4.12623 4.19400 4.26533 4.31934 4.38671 4.43871 4.48701 4.63841 4.69000 4.72131 4.77636 4.84680 4.86100 4.86697 4.94504 5.02616 5.09161 5.13357 5.21394 5.24620 5.36274 5.45730 5.54278 5.60143 5.66257 6.00255 6.30521 6.50545 7.11015 7.19497 7.74666 8.18984 8.98990 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.006507 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.992877 B = 4301.818238 C = 4981.435846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.501 3.499 3 O -0.608 6.608 4 N -0.608 5.608 5 C 0.109 3.891 6 C -0.131 4.131 7 C 0.173 3.827 8 N -0.602 5.602 9 C -0.238 4.238 10 H 0.041 0.959 11 C -0.001 4.001 12 N -0.930 5.930 13 Si 0.896 3.104 14 H -0.304 1.304 15 H -0.306 1.306 16 H -0.238 1.238 17 C 0.174 3.826 18 C -0.160 4.160 19 C -0.191 4.191 20 C -0.162 4.162 21 C -0.134 4.134 22 C 0.120 3.880 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.258 0.742 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.035 0.965 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -1.096 -15.957 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.292 3.708 3 O -0.491 6.491 4 N -0.341 5.341 5 C -0.013 4.013 6 C -0.171 4.171 7 C 0.067 3.933 8 N -0.323 5.323 9 C -0.368 4.368 10 H 0.058 0.942 11 C -0.199 4.199 12 N -0.572 5.572 13 Si 0.724 3.276 14 H -0.232 1.232 15 H -0.233 1.233 16 H -0.162 1.162 17 C 0.048 3.952 18 C -0.180 4.180 19 C -0.229 4.229 20 C -0.200 4.200 21 C -0.175 4.175 22 C -0.004 4.004 23 H 0.125 0.875 24 H 0.112 0.888 25 H 0.131 0.869 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.449 -0.627 -15.808 16.434 hybrid contribution 1.193 0.281 1.306 1.791 sum -3.256 -0.345 -14.502 14.867 Atomic orbital electron populations 1.22048 0.88495 1.06351 1.06076 1.21620 0.92423 0.82472 0.74286 1.90655 1.72106 1.32952 1.53346 1.48355 1.07465 1.07117 1.71136 1.22137 0.98375 0.81909 0.98862 1.22173 0.97194 0.99838 0.97901 1.20595 0.93506 0.88436 0.90779 1.44235 1.61901 1.22916 1.03250 1.18312 0.94866 1.41048 0.82600 0.94178 1.25949 1.00288 0.98803 0.94889 1.70144 1.36349 1.46480 1.04272 0.86562 0.85166 0.76671 0.79226 1.23217 1.23325 1.16153 1.20831 0.91492 0.85445 0.97384 1.23032 1.01695 0.89975 1.03307 1.22824 1.02454 1.03707 0.93872 1.23002 1.00094 0.99983 0.96896 1.22264 1.00239 0.97497 0.97464 1.21508 0.80342 0.99903 0.98619 0.87509 0.88797 0.86943 0.88642 0.86590 0.90392 0.94277 0.90028 0.93295 0.92273 0.95434 0.88067 0.91656 0.89081 0.86992 0.88822 0.94655 0.92406 0.89346 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.08 71.24 0.72 -2.31 16 2 C 0.50 14.28 7.80 87.66 0.68 14.97 16 3 O -0.61 -23.02 16.54 -3.04 -0.05 -23.07 16 4 N -0.61 -16.23 2.97 -818.90 -2.43 -18.66 16 5 C 0.11 2.21 6.35 86.36 0.55 2.76 16 6 C -0.13 -3.83 5.22 30.67 0.16 -3.67 16 7 C 0.17 5.77 2.59 45.02 0.12 5.89 16 8 N -0.60 -25.37 1.93 -677.88 -1.31 -26.68 16 9 C -0.24 -12.57 8.61 84.03 0.72 -11.84 16 10 H 0.04 2.37 6.95 -2.91 -0.02 2.35 16 11 C 0.00 -0.08 5.02 84.86 0.43 0.34 16 12 N -0.93 -56.85 13.97 21.65 0.30 -56.55 16 13 Si 0.90 44.52 26.47 68.60 1.82 46.33 16 14 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 15 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 16 H -0.24 -10.70 5.87 99.48 0.58 -10.11 16 17 C 0.17 6.76 4.26 86.38 0.37 7.13 16 18 C -0.16 -5.36 6.01 -10.80 -0.06 -5.42 16 19 C -0.19 -6.49 10.18 30.59 0.31 -6.18 16 20 C -0.16 -4.32 10.25 30.59 0.31 -4.01 16 21 C -0.13 -4.74 5.36 30.67 0.16 -4.57 16 22 C 0.12 3.51 6.42 86.36 0.55 4.06 16 23 H 0.11 1.37 5.18 -2.39 -0.01 1.36 16 24 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.12 1.69 5.07 -2.39 -0.01 1.68 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.04 1.42 6.98 -2.39 -0.02 1.40 16 30 H 0.08 2.31 7.85 -2.39 -0.02 2.29 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.06 2.03 8.00 -2.39 -0.02 2.01 16 33 H 0.03 1.22 4.48 -2.38 -0.01 1.21 16 34 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.06 2.53 8.03 -2.38 -0.02 2.51 16 36 H 0.09 2.88 8.14 -2.39 -0.02 2.87 16 37 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.03 1.51 7.79 -2.38 -0.02 1.49 16 40 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.07 2.20 7.04 -2.39 -0.02 2.19 16 Total: -1.00 -70.82 327.21 4.22 -66.60 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.87 Total: 14.88 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.02 Total: -2.85 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.44 Total: -101.89 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.82 Total: 46.33 kcal Total: -70.82 4.22 -66.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269617214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.027 kcal (2) G-P(sol) polarization free energy of solvation -70.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds