Wall clock time and date at job start Mon Mar 30 2020 01:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48047 * 111.00288 * 2 1 4 4 C 1.53445 * 86.03925 * 222.73421 * 3 2 1 5 5 C 1.48059 * 111.00037 * 260.55471 * 2 1 3 6 6 C 1.52635 * 113.69132 * 268.93874 * 4 3 2 7 7 C 1.53183 * 109.36779 * 171.39000 * 6 4 3 8 8 C 1.52703 * 109.42622 * 58.94523 * 7 6 4 9 9 N 1.46891 * 109.30806 * 303.72827 * 8 7 6 10 10 C 1.34776 * 120.68855 * 235.35735 * 9 8 7 11 11 O 1.21282 * 119.99940 * 179.72281 * 10 9 8 12 12 C 1.50698 * 120.00035 * 359.71396 * 10 9 8 13 13 C 1.53006 * 109.47184 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46926 * 60.00512 * 18 16 14 20 20 H 1.48506 * 109.46961 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47227 * 300.00303 * 18 16 14 22 22 C 1.47118 * 118.62422 * 55.08042 * 9 8 7 23 23 H 1.09005 * 109.46714 * 59.99812 * 1 2 3 24 24 H 1.08996 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46849 * 300.00306 * 1 2 3 26 26 H 1.09009 * 113.78048 * 108.45187 * 3 2 1 27 27 H 1.08996 * 113.78329 * 337.01776 * 3 2 1 28 28 H 1.09002 * 113.78044 * 22.98453 * 5 2 1 29 29 H 1.08998 * 113.77956 * 251.54733 * 5 2 1 30 30 H 1.09004 * 109.48878 * 291.35514 * 6 4 3 31 31 H 1.08993 * 109.48915 * 51.41830 * 6 4 3 32 32 H 1.09000 * 109.48640 * 179.03006 * 7 6 4 33 33 H 1.08997 * 109.49008 * 299.07511 * 7 6 4 34 34 H 1.09006 * 109.45094 * 183.76226 * 8 7 6 35 35 H 1.08999 * 109.38941 * 63.66048 * 8 7 6 36 36 H 1.09001 * 109.46665 * 60.00498 * 12 10 9 37 37 H 1.08993 * 109.47304 * 300.00054 * 12 10 9 38 38 H 1.09001 * 109.46801 * 300.00442 * 13 12 10 39 39 H 1.09001 * 109.46998 * 60.00038 * 13 12 10 40 40 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.63139 * 68.57078 * 22 9 8 42 42 H 1.09001 * 109.62981 * 189.17239 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3821 0.0000 4 6 3.0113 0.8802 -1.0388 5 6 1.9996 -0.2268 -1.3635 6 6 4.3115 0.3633 -0.4287 7 6 5.1538 -0.3053 -1.5195 8 6 5.4495 0.7063 -2.6246 9 7 4.1843 1.2461 -3.1399 10 6 3.8920 1.1783 -4.4538 11 8 2.8415 1.6235 -4.8651 12 6 4.8704 0.5493 -5.4120 13 6 4.2997 0.6007 -6.8307 14 6 5.2779 -0.0289 -7.7887 15 1 6.2129 -0.4263 -7.4223 16 6 4.9788 -0.0984 -9.1328 17 7 3.8400 0.3851 -9.5790 18 14 6.1910 -0.8794 -10.3203 19 1 6.4240 -2.2934 -9.9310 20 1 5.6366 -0.8305 -11.6971 21 1 7.4756 -0.1358 -10.2766 22 6 3.2402 1.8570 -2.1913 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4519 1.6793 0.9463 27 1 1.2999 2.1216 -0.3894 28 1 1.2998 0.0360 -2.1568 29 1 2.4518 -1.2089 -1.5014 30 1 4.8679 1.1963 0.0010 31 1 4.0836 -0.3631 0.3513 32 1 6.0905 -0.6600 -1.0894 33 1 4.6039 -1.1481 -1.9384 34 1 5.9914 0.2138 -3.4320 35 1 6.0542 1.5178 -2.2199 36 1 5.0423 -0.4885 -5.1265 37 1 5.8128 1.0959 -5.3799 38 1 3.3571 0.0544 -6.8631 39 1 4.1281 1.6386 -7.1159 40 1 3.6297 0.3365 -10.5246 41 1 3.6585 2.7867 -1.8058 42 1 2.2944 2.0582 -2.6943 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271253161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:05 Heat of formation + Delta-G solvation = -12.673650 kcal Electronic energy + Delta-G solvation = -20895.967830 eV Core-core repulsion = 17876.433242 eV Total energy + Delta-G solvation = -3019.534588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05992 -39.02981 -36.33867 -33.50153 -32.53563 -31.56875 -30.70900 -27.50452 -26.40407 -26.05501 -24.88288 -22.76367 -22.06135 -21.08870 -18.64557 -18.28360 -17.00593 -16.06130 -15.93019 -15.71843 -15.41620 -14.94214 -14.71106 -14.41306 -13.95447 -13.60144 -13.35376 -13.26226 -12.95694 -12.63009 -12.27085 -12.15424 -11.91557 -11.73261 -11.39997 -11.19202 -11.07594 -10.91915 -10.86863 -10.59896 -10.45894 -10.41664 -9.94511 -9.59357 -9.17970 -9.09091 -8.94060 -8.35107 -8.27799 -5.95150 -3.99636 3.20964 3.28683 3.34912 3.39711 3.41541 3.75221 4.19870 4.46127 4.48363 4.79449 4.88826 4.90836 4.99665 5.10588 5.19462 5.29561 5.32723 5.38494 5.39691 5.47053 5.54472 5.62311 5.66603 5.73107 5.74476 5.77697 5.82699 6.00555 6.09994 6.18550 6.19815 6.22763 6.24211 6.73308 6.83665 6.92526 7.74822 7.78385 7.87281 8.08150 8.39484 8.76243 9.08675 9.63820 11.15801 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031638 B = 0.004037 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.806235 B = 6933.650976 C = 7302.477107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.484 5.484 3 C 0.011 3.989 4 C -0.099 4.099 5 C 0.015 3.985 6 C -0.088 4.088 7 C -0.136 4.136 8 C 0.108 3.892 9 N -0.622 5.622 10 C 0.514 3.486 11 O -0.536 6.536 12 C -0.128 4.128 13 C 0.038 3.962 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.125 3.875 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.063 0.937 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 0.480 21.617 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.206 5.206 3 C -0.118 4.118 4 C -0.100 4.100 5 C -0.114 4.114 6 C -0.125 4.125 7 C -0.174 4.174 8 C -0.015 4.015 9 N -0.358 5.358 10 C 0.304 3.696 11 O -0.412 6.412 12 C -0.168 4.168 13 C 0.000 4.000 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.001 3.999 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.501 0.292 21.728 21.735 hybrid contribution 0.220 0.095 -1.251 1.274 sum -0.281 0.388 20.477 20.482 Atomic orbital electron populations 1.22861 0.89807 1.02417 1.01004 1.68484 1.08937 1.18190 1.24971 1.23935 0.96682 0.91698 0.99527 1.22338 0.95597 0.96512 0.95576 1.24008 0.96614 1.00120 0.90626 1.21190 0.93451 1.00328 0.97548 1.21858 1.00430 0.98796 0.96305 1.21578 0.85722 0.96651 0.97570 1.48277 1.19475 1.60950 1.07069 1.21575 0.88225 0.78132 0.81665 1.90650 1.26223 1.47445 1.76880 1.21874 0.97496 0.99900 0.97505 1.18898 0.96197 0.98190 0.86709 1.21184 1.03823 1.39157 0.92408 0.92673 1.25019 0.95307 0.95579 0.98419 1.69989 1.22581 1.45667 1.14630 0.86656 0.81333 0.79825 0.80143 1.20246 1.21290 1.20240 1.21454 0.95114 0.94373 0.88918 0.94562 0.91212 0.91519 0.89228 0.91058 0.90862 0.89354 0.91645 0.90703 0.90592 0.91291 0.89013 0.91814 0.90304 0.90312 0.95912 0.95885 0.92908 0.91889 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.64 60.06 0.58 0.47 16 2 N -0.48 -5.19 6.39 -248.69 -1.59 -6.78 16 3 C 0.01 0.10 7.12 -2.97 -0.02 0.08 16 4 C -0.10 -1.05 0.87 -154.41 -0.13 -1.18 16 5 C 0.01 0.18 6.95 -2.96 -0.02 0.15 16 6 C -0.09 -0.80 5.02 -26.82 -0.13 -0.94 16 7 C -0.14 -1.29 5.99 -26.79 -0.16 -1.45 16 8 C 0.11 1.22 6.26 -3.98 -0.02 1.19 16 9 N -0.62 -9.16 2.99 -173.18 -0.52 -9.68 16 10 C 0.51 10.09 7.70 -10.99 -0.08 10.01 16 11 O -0.54 -12.76 15.42 5.56 0.09 -12.67 16 12 C -0.13 -2.63 3.98 -27.88 -0.11 -2.74 16 13 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 14 C -0.53 -15.00 9.11 -34.44 -0.31 -15.32 16 15 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.12 1.61 5.61 -3.81 -0.02 1.58 16 23 H 0.04 0.35 7.62 -51.93 -0.40 -0.04 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.74 8.09 -51.92 -0.42 0.32 16 27 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 28 H 0.07 0.98 7.45 -51.93 -0.39 0.59 16 29 H 0.09 1.07 7.37 -51.93 -0.38 0.69 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.74 7.37 -51.93 -0.38 0.36 16 34 H 0.09 1.05 5.92 -51.93 -0.31 0.75 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.48 7.72 -51.93 -0.40 1.08 16 37 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16 38 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.35 6.87 -51.93 -0.36 0.99 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -33.29 330.26 -9.18 -42.48 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.19 Total: -2.55 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.66 Total: -5.63 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -1.37 Total: -43.27 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.29 -9.18 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271253161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.802 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds