Wall clock time and date at job start Mon Mar 30 2020 01:02:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.48047 * 111.00288 * 2 1
4 4 C 1.53445 * 86.03925 * 222.73421 * 3 2 1
5 5 C 1.48059 * 111.00037 * 260.55471 * 2 1 3
6 6 C 1.52635 * 113.69132 * 268.93874 * 4 3 2
7 7 C 1.53183 * 109.36779 * 171.39000 * 6 4 3
8 8 C 1.52703 * 109.42622 * 58.94523 * 7 6 4
9 9 N 1.46891 * 109.30806 * 303.72827 * 8 7 6
10 10 C 1.34776 * 120.68855 * 235.35735 * 9 8 7
11 11 O 1.21282 * 119.99940 * 179.72281 * 10 9 8
12 12 C 1.50698 * 120.00035 * 359.71396 * 10 9 8
13 13 C 1.53006 * 109.47184 * 180.02562 * 12 10 9
14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 10
15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12
16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12
17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 13
18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13
19 19 H 1.48503 * 109.46926 * 60.00512 * 18 16 14
20 20 H 1.48506 * 109.46961 * 179.97438 * 18 16 14
21 21 H 1.48492 * 109.47227 * 300.00303 * 18 16 14
22 22 C 1.47118 * 118.62422 * 55.08042 * 9 8 7
23 23 H 1.09005 * 109.46714 * 59.99812 * 1 2 3
24 24 H 1.08996 * 109.47198 * 179.97438 * 1 2 3
25 25 H 1.08995 * 109.46849 * 300.00306 * 1 2 3
26 26 H 1.09009 * 113.78048 * 108.45187 * 3 2 1
27 27 H 1.08996 * 113.78329 * 337.01776 * 3 2 1
28 28 H 1.09002 * 113.78044 * 22.98453 * 5 2 1
29 29 H 1.08998 * 113.77956 * 251.54733 * 5 2 1
30 30 H 1.09004 * 109.48878 * 291.35514 * 6 4 3
31 31 H 1.08993 * 109.48915 * 51.41830 * 6 4 3
32 32 H 1.09000 * 109.48640 * 179.03006 * 7 6 4
33 33 H 1.08997 * 109.49008 * 299.07511 * 7 6 4
34 34 H 1.09006 * 109.45094 * 183.76226 * 8 7 6
35 35 H 1.08999 * 109.38941 * 63.66048 * 8 7 6
36 36 H 1.09001 * 109.46665 * 60.00498 * 12 10 9
37 37 H 1.08993 * 109.47304 * 300.00054 * 12 10 9
38 38 H 1.09001 * 109.46801 * 300.00442 * 13 12 10
39 39 H 1.09001 * 109.46998 * 60.00038 * 13 12 10
40 40 H 0.96997 * 119.99752 * 179.97438 * 17 16 14
41 41 H 1.08994 * 109.63139 * 68.57078 * 22 9 8
42 42 H 1.09001 * 109.62981 * 189.17239 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9996 1.3821 0.0000
4 6 3.0113 0.8802 -1.0388
5 6 1.9996 -0.2268 -1.3635
6 6 4.3115 0.3633 -0.4287
7 6 5.1538 -0.3053 -1.5195
8 6 5.4495 0.7063 -2.6246
9 7 4.1843 1.2461 -3.1399
10 6 3.8920 1.1783 -4.4538
11 8 2.8415 1.6235 -4.8651
12 6 4.8704 0.5493 -5.4120
13 6 4.2997 0.6007 -6.8307
14 6 5.2779 -0.0289 -7.7887
15 1 6.2129 -0.4263 -7.4223
16 6 4.9788 -0.0984 -9.1328
17 7 3.8400 0.3851 -9.5790
18 14 6.1910 -0.8794 -10.3203
19 1 6.4240 -2.2934 -9.9310
20 1 5.6366 -0.8305 -11.6971
21 1 7.4756 -0.1358 -10.2766
22 6 3.2402 1.8570 -2.1913
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5139 0.8899
26 1 2.4519 1.6793 0.9463
27 1 1.2999 2.1216 -0.3894
28 1 1.2998 0.0360 -2.1568
29 1 2.4518 -1.2089 -1.5014
30 1 4.8679 1.1963 0.0010
31 1 4.0836 -0.3631 0.3513
32 1 6.0905 -0.6600 -1.0894
33 1 4.6039 -1.1481 -1.9384
34 1 5.9914 0.2138 -3.4320
35 1 6.0542 1.5178 -2.2199
36 1 5.0423 -0.4885 -5.1265
37 1 5.8128 1.0959 -5.3799
38 1 3.3571 0.0544 -6.8631
39 1 4.1281 1.6386 -7.1159
40 1 3.6297 0.3365 -10.5246
41 1 3.6585 2.7867 -1.8058
42 1 2.2944 2.0582 -2.6943
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001271253161.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:02:05
Heat of formation + Delta-G solvation = -12.673650 kcal
Electronic energy + Delta-G solvation = -20895.967830 eV
Core-core repulsion = 17876.433242 eV
Total energy + Delta-G solvation = -3019.534588 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.05992 -39.02981 -36.33867 -33.50153 -32.53563 -31.56875 -30.70900 -27.50452
-26.40407 -26.05501 -24.88288 -22.76367 -22.06135 -21.08870 -18.64557 -18.28360
-17.00593 -16.06130 -15.93019 -15.71843 -15.41620 -14.94214 -14.71106 -14.41306
-13.95447 -13.60144 -13.35376 -13.26226 -12.95694 -12.63009 -12.27085 -12.15424
-11.91557 -11.73261 -11.39997 -11.19202 -11.07594 -10.91915 -10.86863 -10.59896
-10.45894 -10.41664 -9.94511 -9.59357 -9.17970 -9.09091 -8.94060 -8.35107
-8.27799 -5.95150 -3.99636 3.20964 3.28683 3.34912 3.39711 3.41541
3.75221 4.19870 4.46127 4.48363 4.79449 4.88826 4.90836 4.99665
5.10588 5.19462 5.29561 5.32723 5.38494 5.39691 5.47053 5.54472
5.62311 5.66603 5.73107 5.74476 5.77697 5.82699 6.00555 6.09994
6.18550 6.19815 6.22763 6.24211 6.73308 6.83665 6.92526 7.74822
7.78385 7.87281 8.08150 8.39484 8.76243 9.08675 9.63820 11.15801
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.031638 B = 0.004037 C = 0.003833
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 884.806235 B = 6933.650976 C = 7302.477107
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.012 4.012
2 N -0.484 5.484
3 C 0.011 3.989
4 C -0.099 4.099
5 C 0.015 3.985
6 C -0.088 4.088
7 C -0.136 4.136
8 C 0.108 3.892
9 N -0.622 5.622
10 C 0.514 3.486
11 O -0.536 6.536
12 C -0.128 4.128
13 C 0.038 3.962
14 C -0.527 4.527
15 H 0.055 0.945
16 C 0.058 3.942
17 N -0.890 5.890
18 Si 0.893 3.107
19 H -0.277 1.277
20 H -0.287 1.287
21 H -0.277 1.277
22 C 0.125 3.875
23 H 0.036 0.964
24 H 0.069 0.931
25 H 0.066 0.934
26 H 0.089 0.911
27 H 0.071 0.929
28 H 0.073 0.927
29 H 0.088 0.912
30 H 0.065 0.935
31 H 0.074 0.926
32 H 0.076 0.924
33 H 0.068 0.932
34 H 0.092 0.908
35 H 0.064 0.936
36 H 0.079 0.921
37 H 0.079 0.921
38 H 0.022 0.978
39 H 0.023 0.977
40 H 0.261 0.739
41 H 0.063 0.937
42 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.042 0.480 21.617 21.622
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 N -0.206 5.206
3 C -0.118 4.118
4 C -0.100 4.100
5 C -0.114 4.114
6 C -0.125 4.125
7 C -0.174 4.174
8 C -0.015 4.015
9 N -0.358 5.358
10 C 0.304 3.696
11 O -0.412 6.412
12 C -0.168 4.168
13 C 0.000 4.000
14 C -0.566 4.566
15 H 0.073 0.927
16 C -0.143 4.143
17 N -0.529 5.529
18 Si 0.720 3.280
19 H -0.202 1.202
20 H -0.213 1.213
21 H -0.202 1.202
22 C 0.001 3.999
23 H 0.054 0.946
24 H 0.088 0.912
25 H 0.085 0.915
26 H 0.108 0.892
27 H 0.089 0.911
28 H 0.091 0.909
29 H 0.106 0.894
30 H 0.084 0.916
31 H 0.093 0.907
32 H 0.094 0.906
33 H 0.087 0.913
34 H 0.110 0.890
35 H 0.082 0.918
36 H 0.097 0.903
37 H 0.097 0.903
38 H 0.041 0.959
39 H 0.041 0.959
40 H 0.071 0.929
41 H 0.081 0.919
42 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -0.501 0.292 21.728 21.735
hybrid contribution 0.220 0.095 -1.251 1.274
sum -0.281 0.388 20.477 20.482
Atomic orbital electron populations
1.22861 0.89807 1.02417 1.01004 1.68484 1.08937 1.18190 1.24971
1.23935 0.96682 0.91698 0.99527 1.22338 0.95597 0.96512 0.95576
1.24008 0.96614 1.00120 0.90626 1.21190 0.93451 1.00328 0.97548
1.21858 1.00430 0.98796 0.96305 1.21578 0.85722 0.96651 0.97570
1.48277 1.19475 1.60950 1.07069 1.21575 0.88225 0.78132 0.81665
1.90650 1.26223 1.47445 1.76880 1.21874 0.97496 0.99900 0.97505
1.18898 0.96197 0.98190 0.86709 1.21184 1.03823 1.39157 0.92408
0.92673 1.25019 0.95307 0.95579 0.98419 1.69989 1.22581 1.45667
1.14630 0.86656 0.81333 0.79825 0.80143 1.20246 1.21290 1.20240
1.21454 0.95114 0.94373 0.88918 0.94562 0.91212 0.91519 0.89228
0.91058 0.90862 0.89354 0.91645 0.90703 0.90592 0.91291 0.89013
0.91814 0.90304 0.90312 0.95912 0.95885 0.92908 0.91889 0.89247
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.01 -0.11 9.64 60.06 0.58 0.47 16
2 N -0.48 -5.19 6.39 -248.69 -1.59 -6.78 16
3 C 0.01 0.10 7.12 -2.97 -0.02 0.08 16
4 C -0.10 -1.05 0.87 -154.41 -0.13 -1.18 16
5 C 0.01 0.18 6.95 -2.96 -0.02 0.15 16
6 C -0.09 -0.80 5.02 -26.82 -0.13 -0.94 16
7 C -0.14 -1.29 5.99 -26.79 -0.16 -1.45 16
8 C 0.11 1.22 6.26 -3.98 -0.02 1.19 16
9 N -0.62 -9.16 2.99 -173.18 -0.52 -9.68 16
10 C 0.51 10.09 7.70 -10.99 -0.08 10.01 16
11 O -0.54 -12.76 15.42 5.56 0.09 -12.67 16
12 C -0.13 -2.63 3.98 -27.88 -0.11 -2.74 16
13 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16
14 C -0.53 -15.00 9.11 -34.44 -0.31 -15.32 16
15 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16
16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16
17 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16
18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16
19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16
22 C 0.12 1.61 5.61 -3.81 -0.02 1.58 16
23 H 0.04 0.35 7.62 -51.93 -0.40 -0.04 16
24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
26 H 0.09 0.74 8.09 -51.92 -0.42 0.32 16
27 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16
28 H 0.07 0.98 7.45 -51.93 -0.39 0.59 16
29 H 0.09 1.07 7.37 -51.93 -0.38 0.69 16
30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
31 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16
32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.07 0.74 7.37 -51.93 -0.38 0.36 16
34 H 0.09 1.05 5.92 -51.93 -0.31 0.75 16
35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
36 H 0.08 1.48 7.72 -51.93 -0.40 1.08 16
37 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16
38 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16
39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16
40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
42 H 0.09 1.35 6.87 -51.93 -0.36 0.99 16
LS Contribution 330.26 15.07 4.98 4.98
Total: -1.00 -33.29 330.26 -9.18 -42.48
By element:
Atomic # 1 Polarization: 4.64 SS G_CDS: -7.19 Total: -2.55 kcal
Atomic # 6 Polarization: -4.97 SS G_CDS: -0.66 Total: -5.63 kcal
Atomic # 7 Polarization: -41.90 SS G_CDS: -1.37 Total: -43.27 kcal
Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal
Total LS contribution 4.98 Total: 4.98 kcal
Total: -33.29 -9.18 -42.48 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001271253161.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.802 kcal
(2) G-P(sol) polarization free energy of solvation -33.294 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.492 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.674 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds