Wall clock time and date at job start Mon Mar 30 2020 01:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48047 * 111.00288 * 2 1 4 4 C 1.53445 * 86.03925 * 222.73421 * 3 2 1 5 5 C 1.48059 * 111.00037 * 260.55471 * 2 1 3 6 6 C 1.52635 * 113.69132 * 268.93874 * 4 3 2 7 7 C 1.53183 * 109.36779 * 171.39000 * 6 4 3 8 8 C 1.52703 * 109.42622 * 58.94523 * 7 6 4 9 9 N 1.46891 * 109.30806 * 303.72827 * 8 7 6 10 10 C 1.34776 * 120.68855 * 235.35735 * 9 8 7 11 11 O 1.21282 * 119.99940 * 179.72281 * 10 9 8 12 12 C 1.50698 * 120.00035 * 359.71396 * 10 9 8 13 13 C 1.53006 * 109.47184 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47184 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46926 * 60.00512 * 18 16 14 20 20 H 1.48506 * 109.46961 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47227 * 300.00303 * 18 16 14 22 22 C 1.47118 * 118.62422 * 55.08042 * 9 8 7 23 23 H 1.09005 * 109.46714 * 59.99812 * 1 2 3 24 24 H 1.08996 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46849 * 300.00306 * 1 2 3 26 26 H 1.09009 * 113.78048 * 108.45187 * 3 2 1 27 27 H 1.08996 * 113.78329 * 337.01776 * 3 2 1 28 28 H 1.09002 * 113.78044 * 22.98453 * 5 2 1 29 29 H 1.08998 * 113.77956 * 251.54733 * 5 2 1 30 30 H 1.09004 * 109.48878 * 291.35514 * 6 4 3 31 31 H 1.08993 * 109.48915 * 51.41830 * 6 4 3 32 32 H 1.09000 * 109.48640 * 179.03006 * 7 6 4 33 33 H 1.08997 * 109.49008 * 299.07511 * 7 6 4 34 34 H 1.09006 * 109.45094 * 183.76226 * 8 7 6 35 35 H 1.08999 * 109.38941 * 63.66048 * 8 7 6 36 36 H 1.09001 * 109.46665 * 60.00498 * 12 10 9 37 37 H 1.08993 * 109.47304 * 300.00054 * 12 10 9 38 38 H 1.09001 * 109.46801 * 300.00442 * 13 12 10 39 39 H 1.09001 * 109.46998 * 60.00038 * 13 12 10 40 40 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.63139 * 68.57078 * 22 9 8 42 42 H 1.09001 * 109.62981 * 189.17239 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3821 0.0000 4 6 3.0113 0.8802 -1.0388 5 6 1.9996 -0.2268 -1.3635 6 6 4.3115 0.3633 -0.4287 7 6 5.1538 -0.3053 -1.5195 8 6 5.4495 0.7063 -2.6246 9 7 4.1843 1.2461 -3.1399 10 6 3.8920 1.1783 -4.4538 11 8 2.8415 1.6235 -4.8651 12 6 4.8704 0.5493 -5.4120 13 6 4.2997 0.6007 -6.8307 14 6 5.2779 -0.0289 -7.7887 15 1 6.2129 -0.4263 -7.4223 16 6 4.9788 -0.0984 -9.1328 17 7 3.8400 0.3851 -9.5790 18 14 6.1910 -0.8794 -10.3203 19 1 6.4240 -2.2934 -9.9310 20 1 5.6366 -0.8305 -11.6971 21 1 7.4756 -0.1358 -10.2766 22 6 3.2402 1.8570 -2.1913 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 2.4519 1.6793 0.9463 27 1 1.2999 2.1216 -0.3894 28 1 1.2998 0.0360 -2.1568 29 1 2.4518 -1.2089 -1.5014 30 1 4.8679 1.1963 0.0010 31 1 4.0836 -0.3631 0.3513 32 1 6.0905 -0.6600 -1.0894 33 1 4.6039 -1.1481 -1.9384 34 1 5.9914 0.2138 -3.4320 35 1 6.0542 1.5178 -2.2199 36 1 5.0423 -0.4885 -5.1265 37 1 5.8128 1.0959 -5.3799 38 1 3.3571 0.0544 -6.8631 39 1 4.1281 1.6386 -7.1159 40 1 3.6297 0.3365 -10.5246 41 1 3.6585 2.7867 -1.8058 42 1 2.2944 2.0582 -2.6943 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271253161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:04 Heat of formation + Delta-G solvation = -36.555920 kcal Electronic energy + Delta-G solvation = -20897.003443 eV Core-core repulsion = 17876.433242 eV Total energy + Delta-G solvation = -3020.570201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.02585 -40.40688 -37.50760 -35.60560 -33.69466 -33.01505 -32.08957 -28.73648 -27.51837 -27.23042 -26.28929 -23.89570 -23.35805 -22.45528 -19.97056 -19.24492 -18.80668 -17.65112 -17.11366 -16.71400 -16.64384 -16.41380 -16.07974 -15.86352 -14.98236 -14.66804 -14.44949 -14.35094 -14.19288 -14.11347 -13.75124 -13.42947 -13.23896 -12.95493 -12.77222 -12.66747 -12.43224 -12.17729 -12.01534 -11.92723 -11.82899 -11.57048 -11.33961 -11.30847 -11.23886 -10.63157 -10.56218 -9.97754 -9.48373 -8.17907 -6.32437 1.42153 1.46949 1.54612 1.68541 2.04462 2.43531 2.90193 3.14968 3.32168 3.57305 3.88183 3.96939 4.03230 4.10711 4.18302 4.29897 4.39203 4.44363 4.46072 4.50796 4.56498 4.57525 4.66324 4.69138 4.80744 4.84750 4.89442 4.92613 5.03330 5.09327 5.22634 5.27168 5.38535 5.44627 5.47491 5.61313 5.63631 5.84340 5.98572 6.17032 6.42930 6.85763 7.27185 7.38101 8.94714 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031638 B = 0.004037 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.806235 B = 6933.650976 C = 7302.477107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.486 5.486 3 C 0.017 3.983 4 C -0.091 4.091 5 C 0.008 3.992 6 C -0.082 4.082 7 C -0.130 4.130 8 C 0.098 3.902 9 N -0.609 5.609 10 C 0.510 3.490 11 O -0.594 6.594 12 C -0.115 4.115 13 C 0.044 3.956 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.123 3.877 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.103 0.897 38 H -0.021 1.021 39 H -0.020 1.020 40 H 0.263 0.737 41 H 0.086 0.914 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -0.164 23.877 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.208 5.208 3 C -0.112 4.112 4 C -0.092 4.092 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.168 4.168 8 C -0.023 4.023 9 N -0.342 5.342 10 C 0.300 3.700 11 O -0.474 6.474 12 C -0.154 4.154 13 C 0.006 3.994 14 C -0.582 4.582 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.186 1.186 22 C 0.000 4.000 23 H 0.045 0.955 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.130 0.870 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.121 0.879 38 H -0.003 1.003 39 H -0.001 1.001 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.379 -0.364 24.065 24.185 hybrid contribution -0.708 0.319 -1.879 2.033 sum 1.670 -0.045 22.186 22.249 Atomic orbital electron populations 1.22888 0.89209 1.02673 1.01365 1.68483 1.09614 1.19112 1.23609 1.23984 0.96084 0.91054 1.00038 1.22343 0.96670 0.95284 0.94949 1.23929 0.97008 1.00370 0.90759 1.21202 0.92327 1.01107 0.97308 1.21845 1.01724 0.97594 0.95672 1.21954 0.84021 0.98092 0.98279 1.48248 1.20891 1.59494 1.05566 1.21373 0.87230 0.77979 0.83413 1.90630 1.28307 1.50177 1.78295 1.21619 0.98100 1.01826 0.93866 1.18677 0.94780 0.94739 0.91167 1.21681 1.04583 1.38904 0.92990 0.90504 1.26150 0.97348 0.96018 1.00877 1.70181 1.25191 1.47343 1.15147 0.85364 0.78669 0.79325 0.76830 1.18643 1.21377 1.18552 1.21590 0.93555 0.95991 0.88872 0.95486 0.91111 0.89818 0.86992 0.91091 0.93509 0.89910 0.89461 0.90234 0.87598 0.92933 0.89018 0.89030 0.88149 0.87900 1.00274 1.00114 0.92871 0.89580 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.23 9.64 127.69 1.23 1.01 16 2 N -0.49 -9.83 6.39 -940.73 -6.02 -15.85 16 3 C 0.02 0.29 7.12 86.23 0.61 0.91 16 4 C -0.09 -1.78 0.87 -52.05 -0.05 -1.83 16 5 C 0.01 0.20 6.95 86.22 0.60 0.80 16 6 C -0.08 -1.21 5.02 30.53 0.15 -1.06 16 7 C -0.13 -2.03 5.99 30.56 0.18 -1.85 16 8 C 0.10 1.91 6.26 86.21 0.54 2.45 16 9 N -0.61 -17.44 2.99 -820.20 -2.45 -19.89 16 10 C 0.51 20.61 7.70 87.66 0.68 21.29 16 11 O -0.59 -30.22 15.42 -3.04 -0.05 -30.26 16 12 C -0.11 -4.73 3.98 29.85 0.12 -4.62 16 13 C 0.04 2.51 4.26 29.85 0.13 2.63 16 14 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 15 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 17 N -0.94 -60.24 13.29 21.45 0.28 -59.96 16 18 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 C 0.12 3.07 5.61 86.19 0.48 3.56 16 23 H 0.03 0.54 7.62 -2.38 -0.02 0.52 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.11 1.44 8.09 -2.38 -0.02 1.43 16 27 H 0.07 1.22 7.87 -2.39 -0.02 1.20 16 28 H 0.05 1.35 7.45 -2.39 -0.02 1.34 16 29 H 0.08 2.03 7.37 -2.39 -0.02 2.01 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.18 8.02 -2.39 -0.02 1.16 16 32 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.01 7.37 -2.39 -0.02 1.00 16 34 H 0.09 1.82 5.92 -2.38 -0.01 1.80 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 3.69 7.72 -2.39 -0.02 3.67 16 37 H 0.10 3.73 7.92 -2.39 -0.02 3.71 16 38 H -0.02 -1.37 8.10 -2.39 -0.02 -1.39 16 39 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 40 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.86 6.87 -2.39 -0.02 1.85 16 Total: -1.00 -77.01 330.26 0.15 -76.86 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.98 Total: 10.29 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.38 Total: -7.66 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -8.18 Total: -95.69 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -77.01 0.15 -76.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271253161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.305 kcal (2) G-P(sol) polarization free energy of solvation -77.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds