Wall clock time and date at job start Mon Mar 30 2020 00:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.47089 * 2 1 4 4 C 1.48735 * 110.99569 * 52.84319 * 3 2 1 5 5 C 1.54998 * 103.34938 * 158.81321 * 4 3 2 6 6 C 1.54801 * 102.94594 * 323.03865 * 5 4 3 7 7 C 1.47076 * 111.00122 * 169.99714 * 3 2 1 8 8 C 1.53859 * 110.70332 * 93.73491 * 7 3 2 9 9 C 1.54644 * 101.58775 * 263.77644 * 8 7 3 10 10 N 1.46856 * 105.50173 * 335.25000 * 9 8 7 11 11 C 1.46506 * 124.36676 * 196.60230 * 10 9 8 12 12 C 1.52994 * 109.47371 * 89.99975 * 11 10 9 13 13 C 1.50697 * 109.47381 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00002 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00062 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00174 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47005 * 60.00021 * 17 15 13 19 19 H 1.48496 * 109.47356 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47245 * 300.00027 * 17 15 13 21 21 C 1.34658 * 111.26516 * 16.86874 * 10 9 8 22 22 O 1.21282 * 125.08470 * 179.14265 * 21 10 9 23 23 H 1.09002 * 109.46997 * 59.99845 * 1 2 3 24 24 H 1.09001 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47203 * 299.99732 * 1 2 3 26 26 H 1.08997 * 109.47703 * 240.00431 * 2 1 3 27 27 H 1.09004 * 109.47436 * 119.99880 * 2 1 3 28 28 H 1.08995 * 110.64693 * 40.34857 * 4 3 2 29 29 H 1.08999 * 110.64607 * 277.27523 * 4 3 2 30 30 H 1.09002 * 110.71686 * 204.67997 * 5 4 3 31 31 H 1.08998 * 110.72571 * 81.40570 * 5 4 3 32 32 H 1.08995 * 110.37267 * 263.06999 * 6 5 4 33 33 H 1.08999 * 110.46431 * 140.77997 * 6 5 4 34 34 H 1.09001 * 111.00161 * 145.69833 * 8 7 3 35 35 H 1.09006 * 111.00646 * 21.85528 * 8 7 3 36 36 H 1.09007 * 110.24413 * 216.24765 * 9 8 7 37 37 H 1.08994 * 110.31567 * 94.29662 * 9 8 7 38 38 H 1.08998 * 109.46932 * 210.00595 * 11 10 9 39 39 H 1.08999 * 109.46775 * 329.99825 * 11 10 9 40 40 H 1.09007 * 109.47338 * 300.00233 * 12 11 10 41 41 H 1.09002 * 109.46996 * 59.99457 * 12 11 10 42 42 H 0.96993 * 120.00230 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.4065 2.1671 1.1067 5 6 2.3931 3.3467 1.3006 6 6 3.7732 2.6874 1.0624 7 6 3.4702 1.4313 0.2385 8 6 4.2398 1.4588 -1.0935 9 6 4.5858 -0.0365 -1.2833 10 7 4.5839 -0.6142 0.0669 11 6 5.1884 -1.9022 0.4161 12 6 6.6474 -1.6873 0.8233 13 6 7.2690 -3.0121 1.1832 14 1 6.6822 -3.9169 1.1266 15 6 8.5868 -3.0689 1.5845 16 7 9.3015 -1.9671 1.6529 17 14 9.3575 -4.7112 2.0299 18 1 9.3005 -5.6192 0.8562 19 1 10.7736 -4.5025 2.4252 20 1 8.6113 -5.3175 3.1616 21 6 3.9499 0.1900 0.9413 22 8 3.7893 -0.0502 2.1192 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.3438 1.5656 2.0135 29 1 0.4213 2.5335 0.8184 30 1 2.3251 3.7437 2.3135 31 1 2.2076 4.1296 0.5652 32 1 4.2332 2.4160 2.0126 33 1 4.4252 3.3591 0.5042 34 1 5.1442 2.0615 -1.0097 35 1 3.6059 1.8190 -1.9037 36 1 5.5716 -0.1409 -1.7366 37 1 3.8329 -0.5234 -1.9028 38 1 4.6409 -2.3471 1.2471 39 1 5.1460 -2.5689 -0.4452 40 1 7.1948 -1.2424 -0.0077 41 1 6.6898 -1.0205 1.6846 42 1 10.2285 -2.0070 1.9356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272436810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:35 Heat of formation + Delta-G solvation = -31.542633 kcal Electronic energy + Delta-G solvation = -21512.757241 eV Core-core repulsion = 18492.404433 eV Total energy + Delta-G solvation = -3020.352809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21202 -37.59841 -36.00171 -33.84331 -33.40149 -31.78535 -29.14755 -28.79245 -27.68253 -25.07158 -23.96391 -22.54087 -21.80064 -20.72907 -20.29464 -18.39218 -16.68695 -16.60971 -15.70898 -15.64874 -15.15575 -14.88323 -14.45918 -14.22635 -13.62641 -13.34827 -13.25739 -12.72321 -12.67839 -12.47325 -12.38327 -12.08670 -11.88000 -11.56098 -11.38990 -11.26905 -11.16201 -11.01576 -10.92135 -10.74692 -10.65854 -10.54427 -10.02936 -9.87508 -9.65644 -9.23446 -8.38673 -8.31898 -8.02314 -6.03198 -4.06994 2.88946 3.32216 3.36378 3.38415 3.54139 3.92556 4.40739 4.44460 4.50521 4.67960 4.92213 5.08619 5.10729 5.14252 5.20000 5.31409 5.32814 5.47024 5.53261 5.70006 5.74146 5.79209 5.81664 5.87338 5.92087 5.96314 6.01202 6.01735 6.11670 6.14592 6.19677 6.44469 6.79377 6.80569 6.92027 6.99971 7.48496 7.65136 7.83299 7.96122 8.32151 8.63274 8.99363 9.57091 11.08183 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.004718 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.360621 B = 5932.759540 C = 6167.300892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.026 3.974 3 N -0.484 5.484 4 C 0.031 3.969 5 C -0.119 4.119 6 C -0.113 4.113 7 C 0.059 3.941 8 C -0.115 4.115 9 C 0.099 3.901 10 N -0.608 5.608 11 C 0.127 3.873 12 C 0.013 3.987 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.504 3.496 22 O -0.533 6.533 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.206 9.648 -6.760 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 N -0.209 5.209 4 C -0.096 4.096 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.035 4.035 8 C -0.153 4.153 9 C -0.025 4.025 10 N -0.340 5.340 11 C 0.007 3.993 12 C -0.024 4.024 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.289 3.711 22 O -0.409 6.409 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.205 9.686 -6.599 19.198 hybrid contribution 0.861 -1.406 0.963 1.909 sum -14.344 8.280 -5.636 17.495 Atomic orbital electron populations 1.21799 0.94601 1.01851 1.02196 1.22464 0.96182 0.89514 1.02034 1.64994 1.01453 1.12182 1.42258 1.23335 0.98415 0.94702 0.93149 1.22499 0.94065 0.97410 1.01773 1.22314 0.98065 0.94365 1.00398 1.22114 0.90108 0.95066 0.96177 1.22630 1.00010 0.95948 0.96735 1.22130 1.02301 0.93263 0.84795 1.48660 1.54829 1.21473 1.09077 1.21803 0.96896 0.80887 0.99712 1.19385 0.88503 0.97570 0.96991 1.21043 0.96290 0.93145 1.45754 0.92564 1.24995 0.97254 0.96544 0.95401 1.69962 1.08757 1.27018 1.47410 0.86608 0.78209 0.83932 0.78963 1.20171 1.21221 1.20156 1.20894 0.77981 0.85794 0.86398 1.90693 1.58474 1.76805 1.14939 0.91925 0.92215 0.92605 0.90417 0.93285 0.92948 0.89839 0.90910 0.90706 0.90305 0.90180 0.89646 0.88462 0.90065 0.91612 0.91319 0.91627 0.96422 0.96199 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.59 37.16 0.36 -1.18 16 2 C 0.03 0.34 4.95 -3.82 -0.02 0.33 16 3 N -0.48 -6.23 5.02 -216.77 -1.09 -7.32 16 4 C 0.03 0.37 5.11 -1.75 -0.01 0.36 16 5 C -0.12 -1.29 7.07 -24.73 -0.17 -1.46 16 6 C -0.11 -1.50 6.18 -25.66 -0.16 -1.65 16 7 C 0.06 0.85 0.79 -132.18 -0.10 0.74 16 8 C -0.12 -1.41 6.33 -25.42 -0.16 -1.58 16 9 C 0.10 1.39 6.85 -2.98 -0.02 1.37 16 10 N -0.61 -11.29 2.93 -172.50 -0.51 -11.79 16 11 C 0.13 2.74 5.88 -4.04 -0.02 2.72 16 12 C 0.01 0.36 5.30 -27.89 -0.15 0.21 16 13 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 17 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.50 9.61 4.46 -11.14 -0.05 9.56 16 22 O -0.53 -12.27 16.56 5.56 0.09 -12.18 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.56 6.81 -51.93 -0.35 0.21 16 26 H 0.08 1.02 7.08 -51.93 -0.37 0.65 16 27 H 0.05 0.82 5.91 -51.93 -0.31 0.51 16 28 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 29 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.24 7.44 -51.93 -0.39 0.85 16 33 H 0.08 0.91 7.40 -51.93 -0.38 0.52 16 34 H 0.08 1.00 7.57 -51.93 -0.39 0.61 16 35 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.81 7.46 -51.93 -0.39 0.42 16 38 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -32.95 328.27 -8.91 -41.86 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -7.15 Total: -1.66 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.92 Total: -4.23 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.86 Total: -45.55 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.95 -8.91 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272436810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.315 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds