Wall clock time and date at job start Mon Mar 30 2020 00:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.47089 * 2 1 4 4 C 1.48735 * 110.99569 * 52.84319 * 3 2 1 5 5 C 1.54998 * 103.34938 * 158.81321 * 4 3 2 6 6 C 1.54801 * 102.94594 * 323.03865 * 5 4 3 7 7 C 1.47076 * 111.00122 * 169.99714 * 3 2 1 8 8 C 1.53859 * 110.70332 * 93.73491 * 7 3 2 9 9 C 1.54644 * 101.58775 * 263.77644 * 8 7 3 10 10 N 1.46856 * 105.50173 * 335.25000 * 9 8 7 11 11 C 1.46506 * 124.36676 * 196.60230 * 10 9 8 12 12 C 1.52994 * 109.47371 * 89.99975 * 11 10 9 13 13 C 1.50697 * 109.47381 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00002 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00062 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00174 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00175 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47005 * 60.00021 * 17 15 13 19 19 H 1.48496 * 109.47356 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47245 * 300.00027 * 17 15 13 21 21 C 1.34658 * 111.26516 * 16.86874 * 10 9 8 22 22 O 1.21282 * 125.08470 * 179.14265 * 21 10 9 23 23 H 1.09002 * 109.46997 * 59.99845 * 1 2 3 24 24 H 1.09001 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47203 * 299.99732 * 1 2 3 26 26 H 1.08997 * 109.47703 * 240.00431 * 2 1 3 27 27 H 1.09004 * 109.47436 * 119.99880 * 2 1 3 28 28 H 1.08995 * 110.64693 * 40.34857 * 4 3 2 29 29 H 1.08999 * 110.64607 * 277.27523 * 4 3 2 30 30 H 1.09002 * 110.71686 * 204.67997 * 5 4 3 31 31 H 1.08998 * 110.72571 * 81.40570 * 5 4 3 32 32 H 1.08995 * 110.37267 * 263.06999 * 6 5 4 33 33 H 1.08999 * 110.46431 * 140.77997 * 6 5 4 34 34 H 1.09001 * 111.00161 * 145.69833 * 8 7 3 35 35 H 1.09006 * 111.00646 * 21.85528 * 8 7 3 36 36 H 1.09007 * 110.24413 * 216.24765 * 9 8 7 37 37 H 1.08994 * 110.31567 * 94.29662 * 9 8 7 38 38 H 1.08998 * 109.46932 * 210.00595 * 11 10 9 39 39 H 1.08999 * 109.46775 * 329.99825 * 11 10 9 40 40 H 1.09007 * 109.47338 * 300.00233 * 12 11 10 41 41 H 1.09002 * 109.46996 * 59.99457 * 12 11 10 42 42 H 0.96993 * 120.00230 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.4065 2.1671 1.1067 5 6 2.3931 3.3467 1.3006 6 6 3.7732 2.6874 1.0624 7 6 3.4702 1.4313 0.2385 8 6 4.2398 1.4588 -1.0935 9 6 4.5858 -0.0365 -1.2833 10 7 4.5839 -0.6142 0.0669 11 6 5.1884 -1.9022 0.4161 12 6 6.6474 -1.6873 0.8233 13 6 7.2690 -3.0121 1.1832 14 1 6.6822 -3.9169 1.1266 15 6 8.5868 -3.0689 1.5845 16 7 9.3015 -1.9671 1.6529 17 14 9.3575 -4.7112 2.0299 18 1 9.3005 -5.6192 0.8562 19 1 10.7736 -4.5025 2.4252 20 1 8.6113 -5.3175 3.1616 21 6 3.9499 0.1900 0.9413 22 8 3.7893 -0.0502 2.1192 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.3438 1.5656 2.0135 29 1 0.4213 2.5335 0.8184 30 1 2.3251 3.7437 2.3135 31 1 2.2076 4.1296 0.5652 32 1 4.2332 2.4160 2.0126 33 1 4.4252 3.3591 0.5042 34 1 5.1442 2.0615 -1.0097 35 1 3.6059 1.8190 -1.9037 36 1 5.5716 -0.1409 -1.7366 37 1 3.8329 -0.5234 -1.9028 38 1 4.6409 -2.3471 1.2471 39 1 5.1460 -2.5689 -0.4452 40 1 7.1948 -1.2424 -0.0077 41 1 6.6898 -1.0205 1.6846 42 1 10.2285 -2.0070 1.9356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272436810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:35 Heat of formation + Delta-G solvation = -54.398512 kcal Electronic energy + Delta-G solvation = -21513.748347 eV Core-core repulsion = 18492.404433 eV Total energy + Delta-G solvation = -3021.343914 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47612 -38.87853 -37.54994 -35.63484 -34.63884 -33.45542 -30.81047 -29.78155 -28.86420 -27.00308 -25.10372 -23.79675 -23.39596 -21.82609 -21.66318 -19.77610 -18.71897 -17.88659 -17.26714 -16.81360 -16.59042 -16.27439 -16.09045 -15.44118 -14.97629 -14.61293 -14.55357 -14.46716 -14.18647 -13.75457 -13.57129 -13.42352 -13.29399 -12.88911 -12.80514 -12.62556 -12.50705 -12.29670 -12.13686 -12.06805 -11.99071 -11.89947 -11.64212 -11.58638 -11.46215 -11.01531 -10.62883 -9.65702 -9.50038 -8.26698 -6.40235 1.36768 1.41166 1.43624 1.49237 2.07582 2.38847 2.83808 3.06629 3.25752 3.39554 3.66119 3.88220 4.06110 4.10719 4.15678 4.24207 4.25970 4.29921 4.51253 4.52594 4.59814 4.68320 4.70904 4.78953 4.82753 4.87988 4.95292 4.99189 5.03394 5.07768 5.15510 5.21966 5.26592 5.28982 5.40806 5.54485 5.75433 5.78691 5.85523 6.10779 6.21781 6.74319 7.12421 7.29813 8.85365 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030783 B = 0.004718 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.360621 B = 5932.759540 C = 6167.300892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.027 3.973 3 N -0.468 5.468 4 C 0.028 3.972 5 C -0.110 4.110 6 C -0.119 4.119 7 C 0.061 3.939 8 C -0.103 4.103 9 C 0.091 3.909 10 N -0.615 5.615 11 C 0.142 3.858 12 C 0.026 3.974 13 C -0.548 4.548 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.971 3.029 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.271 1.271 21 C 0.492 3.508 22 O -0.587 6.587 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.007 0.993 28 H 0.024 0.976 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.041 0.959 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.003 0.997 41 H -0.030 1.030 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 10.061 -8.910 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 N -0.193 5.193 4 C -0.100 4.100 5 C -0.148 4.148 6 C -0.157 4.157 7 C -0.032 4.032 8 C -0.141 4.141 9 C -0.030 4.030 10 N -0.347 5.347 11 C 0.021 3.979 12 C -0.012 4.012 13 C -0.587 4.587 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.795 3.205 18 H -0.183 1.183 19 H -0.206 1.206 20 H -0.196 1.196 21 C 0.279 3.721 22 O -0.467 6.467 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.025 0.975 28 H 0.043 0.957 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.021 0.979 41 H -0.011 1.011 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.436 10.116 -8.794 21.209 hybrid contribution 1.235 -1.516 1.660 2.565 sum -15.201 8.600 -7.135 18.866 Atomic orbital electron populations 1.21758 0.92187 1.02630 1.03111 1.22462 0.98210 0.89342 1.00121 1.65137 1.00216 1.11824 1.42077 1.23462 1.00127 0.94551 0.91827 1.22532 0.91707 0.97404 1.03161 1.22387 1.00042 0.94491 0.98817 1.22213 0.91391 0.92757 0.96864 1.22701 1.00539 0.94602 0.96212 1.22468 1.03371 0.94703 0.82496 1.48765 1.54142 1.20554 1.11205 1.21352 0.93530 0.83091 0.99969 1.19180 0.91711 0.95943 0.94320 1.21499 0.97011 0.94076 1.46065 0.91627 1.26021 0.97828 1.00824 0.94950 1.70105 1.09214 1.29672 1.48157 0.85412 0.77106 0.78813 0.79187 1.18319 1.20643 1.19600 1.21890 0.77194 0.87161 0.85867 1.90640 1.60420 1.78164 1.17501 0.90040 0.91646 0.92492 0.90054 0.97494 0.95747 0.86928 0.90310 0.87782 0.93963 0.87812 0.88930 0.85122 0.89995 0.88924 0.93392 0.89082 0.97913 1.01142 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.59 71.98 0.69 -1.95 16 2 C 0.03 0.69 4.95 86.30 0.43 1.11 16 3 N -0.47 -11.18 5.02 -839.73 -4.22 -15.40 16 4 C 0.03 0.61 5.11 86.63 0.44 1.05 16 5 C -0.11 -2.14 7.07 31.89 0.23 -1.92 16 6 C -0.12 -3.07 6.18 31.29 0.19 -2.88 16 7 C 0.06 1.72 0.79 3.06 0.00 1.72 16 8 C -0.10 -2.27 6.33 31.44 0.20 -2.07 16 9 C 0.09 2.44 6.85 86.87 0.59 3.04 16 10 N -0.61 -23.40 2.93 -818.13 -2.40 -25.80 16 11 C 0.14 6.37 5.88 86.38 0.51 6.88 16 12 C 0.03 1.48 5.30 29.84 0.16 1.64 16 13 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 14 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 15 C 0.00 0.12 5.46 84.65 0.46 0.59 16 16 N -0.93 -58.21 13.29 21.45 0.28 -57.92 16 17 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.49 19.56 4.46 87.61 0.39 19.95 16 22 O -0.59 -29.19 16.56 -3.03 -0.05 -29.24 16 23 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.06 6.81 -2.39 -0.02 1.05 16 26 H 0.08 1.99 7.08 -2.39 -0.02 1.98 16 27 H 0.01 0.24 5.91 -2.38 -0.01 0.22 16 28 H 0.02 0.67 7.98 -2.39 -0.02 0.65 16 29 H 0.11 1.83 7.72 -2.39 -0.02 1.82 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.39 7.44 -2.39 -0.02 1.38 16 33 H 0.10 2.14 7.40 -2.39 -0.02 2.13 16 34 H 0.09 1.94 7.57 -2.39 -0.02 1.92 16 35 H 0.13 2.09 8.07 -2.38 -0.02 2.07 16 36 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.09 2.01 7.46 -2.39 -0.02 1.99 16 38 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 39 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 41 H -0.03 -1.94 8.14 -2.39 -0.02 -1.96 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -76.28 328.27 1.15 -75.13 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.98 Total: 10.97 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.53 Total: -4.75 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -6.33 Total: -99.12 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.24 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -76.28 1.15 -75.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272436810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.729 kcal (2) G-P(sol) polarization free energy of solvation -76.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds