Wall clock time and date at job start Mon Mar 30 2020 00:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.46980 * 2 1 4 4 C 1.48735 * 110.99973 * 60.84727 * 3 2 1 5 5 C 1.55002 * 103.35455 * 158.81275 * 4 3 2 6 6 C 1.54802 * 102.94409 * 323.04517 * 5 4 3 7 7 C 1.47084 * 111.00108 * 177.99888 * 3 2 1 8 8 C 1.53870 * 110.68188 * 336.04880 * 7 3 2 9 9 C 1.54815 * 101.50838 * 96.03026 * 8 7 3 10 10 N 1.46846 * 105.42218 * 25.07230 * 9 8 7 11 11 C 1.46502 * 124.36456 * 163.03505 * 10 9 8 12 12 C 1.52998 * 109.47401 * 269.72181 * 11 10 9 13 13 C 1.50698 * 109.47416 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99857 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00061 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99932 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99971 * 0.27984 * 15 13 12 18 18 H 1.48496 * 109.47317 * 269.72190 * 17 15 13 19 19 H 1.48501 * 109.47197 * 29.72577 * 17 15 13 20 20 H 1.48500 * 109.46928 * 149.72100 * 17 15 13 21 21 C 1.34668 * 111.26938 * 342.76795 * 10 9 8 22 22 O 1.21274 * 125.08681 * 181.11343 * 21 10 9 23 23 H 1.09007 * 109.46947 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47428 * 299.99619 * 1 2 3 25 25 H 1.08999 * 109.47514 * 60.00240 * 1 2 3 26 26 H 1.09000 * 109.47428 * 240.00381 * 2 1 3 27 27 H 1.08999 * 109.47514 * 119.99760 * 2 1 3 28 28 H 1.09006 * 110.64036 * 40.34803 * 4 3 2 29 29 H 1.08995 * 110.78393 * 277.35010 * 4 3 2 30 30 H 1.08997 * 110.72006 * 204.67937 * 5 4 3 31 31 H 1.09001 * 110.71447 * 81.40960 * 5 4 3 32 32 H 1.08999 * 110.37018 * 263.06113 * 6 5 4 33 33 H 1.09001 * 110.46175 * 140.76853 * 6 5 4 34 34 H 1.09003 * 110.99853 * 214.29989 * 8 7 3 35 35 H 1.08989 * 111.00778 * 338.11242 * 8 7 3 36 36 H 1.09000 * 110.37705 * 266.03436 * 9 8 7 37 37 H 1.09003 * 110.17700 * 144.00239 * 9 8 7 38 38 H 1.09001 * 109.46790 * 149.72162 * 11 10 9 39 39 H 1.09005 * 109.47471 * 29.72480 * 11 10 9 40 40 H 1.09003 * 109.46851 * 59.99768 * 12 11 10 41 41 H 1.09005 * 109.47053 * 300.00555 * 12 11 10 42 42 H 0.97001 * 119.99426 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5595 2.1130 1.2127 5 6 2.5665 3.2855 1.3300 6 6 3.9014 2.6421 0.8822 7 6 3.4891 1.4246 0.0479 8 6 4.0477 0.1310 0.6662 9 6 4.3698 -0.7017 -0.5986 10 7 4.5831 0.2806 -1.6691 11 6 5.2501 -0.0130 -2.9400 12 6 6.7507 0.2512 -2.8014 13 6 7.4367 -0.0502 -4.1089 14 1 6.8600 -0.3953 -4.9543 15 6 8.8004 0.1155 -4.2262 16 7 9.3992 -0.1480 -5.3671 17 14 9.7988 0.7063 -2.7620 18 1 9.8733 2.1892 -2.7795 19 1 9.1471 0.2581 -1.5052 20 1 11.1699 0.1409 -2.8374 21 6 4.0814 1.4846 -1.3342 22 8 4.1033 2.4700 -2.0409 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6145 1.4698 2.0910 29 1 0.5457 2.4893 1.0765 30 1 2.6333 3.6348 2.3603 31 1 2.2883 4.1009 0.6624 32 1 4.4814 2.3285 1.7501 33 1 4.4764 3.3411 0.2748 34 1 4.9486 0.3324 1.2457 35 1 3.2952 -0.3663 1.2779 36 1 3.5327 -1.3542 -0.8467 37 1 5.2737 -1.2902 -0.4411 38 1 4.8393 0.6258 -3.7219 39 1 5.0879 -1.0585 -3.2025 40 1 7.1614 -0.3876 -2.0195 41 1 6.9128 1.2967 -2.5389 42 1 10.3587 -0.0317 -5.4494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272436819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:38 Heat of formation + Delta-G solvation = -17.822191 kcal Electronic energy + Delta-G solvation = -21454.456263 eV Core-core repulsion = 18434.698417 eV Total energy + Delta-G solvation = -3019.757846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28494 -37.99756 -35.98543 -33.67016 -33.58035 -31.92042 -29.54868 -28.96869 -27.87112 -25.30624 -23.98738 -22.94828 -21.66927 -20.78943 -19.98471 -18.61387 -17.07979 -16.95165 -15.98675 -15.44130 -15.09753 -15.04875 -14.47056 -14.14801 -13.86492 -13.54174 -13.21701 -13.05840 -12.81569 -12.69646 -12.49701 -12.41913 -12.03186 -11.78443 -11.59415 -11.46152 -11.32664 -11.13827 -10.99061 -10.70216 -10.63175 -10.40674 -10.12670 -9.82695 -9.52350 -9.24878 -8.55291 -8.43485 -8.12429 -6.06205 -4.05021 2.85449 3.31243 3.37701 3.40662 3.40981 3.92595 4.26626 4.36494 4.44346 4.53899 4.72584 4.76858 4.93099 4.98982 5.06357 5.11717 5.27749 5.28322 5.33326 5.45993 5.54985 5.57513 5.67015 5.71514 5.76368 5.80261 5.87798 5.94228 5.98668 6.02117 6.14519 6.33895 6.61228 6.68751 6.78839 6.91063 7.20280 7.34053 7.66247 7.75837 8.48118 8.65580 8.97099 9.55823 11.06952 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.005065 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.286535 B = 5527.018177 C = 5874.165226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.028 3.972 3 N -0.490 5.490 4 C 0.037 3.963 5 C -0.121 4.121 6 C -0.114 4.114 7 C 0.063 3.937 8 C -0.165 4.165 9 C 0.101 3.899 10 N -0.615 5.615 11 C 0.138 3.862 12 C -0.024 4.024 13 C -0.521 4.521 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.901 5.901 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.267 1.267 20 H -0.287 1.287 21 C 0.537 3.463 22 O -0.518 6.518 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 -0.239 18.059 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 N -0.215 5.215 4 C -0.091 4.091 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.030 4.030 8 C -0.204 4.204 9 C -0.023 4.023 10 N -0.349 5.349 11 C 0.018 3.982 12 C -0.062 4.062 13 C -0.559 4.559 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.540 5.540 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.192 1.192 20 H -0.213 1.213 21 C 0.321 3.679 22 O -0.392 6.392 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.216 0.486 16.999 23.498 hybrid contribution 1.052 -0.291 1.354 1.740 sum -15.164 0.195 18.353 23.808 Atomic orbital electron populations 1.21795 0.94624 1.01705 1.02491 1.22613 0.96132 0.89539 1.01660 1.64570 1.04533 1.14200 1.38203 1.23296 0.99688 0.95161 0.90924 1.22529 0.94080 0.98010 1.01319 1.22310 0.98229 0.95809 0.98853 1.21956 0.89587 0.96279 0.95180 1.23374 1.02587 0.96528 0.97906 1.22138 1.01774 0.91990 0.86365 1.48600 1.57623 1.10362 1.18316 1.21574 0.94143 1.00687 0.81842 1.19893 0.91430 0.96772 0.98129 1.20964 0.92905 1.45408 0.96636 0.90780 1.24969 0.97778 0.94704 0.95685 1.69909 1.10200 1.49154 1.24698 0.86769 0.79294 0.79447 0.83712 1.20186 1.19220 1.21322 1.20055 0.77535 0.82945 0.87326 1.90676 1.57978 1.34124 1.56427 0.92157 0.92738 0.91773 0.90070 0.93388 0.93577 0.89709 0.90860 0.90331 0.90692 0.89765 0.89408 0.88569 0.91334 0.90160 0.90503 0.91037 0.96560 0.96605 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.80 37.15 0.36 -0.89 16 2 C 0.03 0.28 4.40 -3.83 -0.02 0.26 16 3 N -0.49 -6.03 5.02 -216.76 -1.09 -7.12 16 4 C 0.04 0.35 5.44 -1.75 -0.01 0.34 16 5 C -0.12 -1.21 7.07 -24.72 -0.17 -1.39 16 6 C -0.11 -1.40 6.19 -25.66 -0.16 -1.56 16 7 C 0.06 0.87 0.80 -132.17 -0.11 0.76 16 8 C -0.17 -1.82 5.69 -25.32 -0.14 -1.96 16 9 C 0.10 1.32 6.66 -2.90 -0.02 1.30 16 10 N -0.62 -11.01 2.94 -172.40 -0.51 -11.52 16 11 C 0.14 2.88 5.88 -4.04 -0.02 2.86 16 12 C -0.02 -0.59 4.36 -27.89 -0.12 -0.71 16 13 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 14 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 17 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 C 0.54 10.09 7.05 -11.13 -0.08 10.01 16 22 O -0.52 -11.95 17.13 5.56 0.10 -11.85 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.41 6.98 -51.93 -0.36 0.04 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.92 6.16 -51.93 -0.32 0.60 16 27 H 0.05 0.41 5.44 -51.93 -0.28 0.12 16 28 H 0.05 0.37 7.98 -51.93 -0.41 -0.04 16 29 H 0.08 0.74 7.71 -51.93 -0.40 0.34 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.76 7.38 -51.93 -0.38 0.38 16 33 H 0.08 1.24 7.43 -51.93 -0.39 0.85 16 34 H 0.09 0.92 7.55 -51.93 -0.39 0.53 16 35 H 0.10 0.82 5.29 -51.93 -0.27 0.55 16 36 H 0.07 0.76 6.40 -51.93 -0.33 0.43 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.74 7.93 -51.93 -0.41 1.32 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.02 0.39 7.19 -51.93 -0.37 0.02 16 41 H 0.02 0.41 7.58 -51.93 -0.39 0.02 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -34.14 321.90 -8.31 -42.46 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.85 Total: -2.72 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.92 Total: -4.41 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.82 Total: -45.93 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.10 Total: -11.85 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.14 -8.31 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272436819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.633 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds