Wall clock time and date at job start Mon Mar 30 2020 00:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.46980 * 2 1 4 4 C 1.48735 * 110.99973 * 60.84727 * 3 2 1 5 5 C 1.55002 * 103.35455 * 158.81275 * 4 3 2 6 6 C 1.54802 * 102.94409 * 323.04517 * 5 4 3 7 7 C 1.47084 * 111.00108 * 177.99888 * 3 2 1 8 8 C 1.53870 * 110.68188 * 336.04880 * 7 3 2 9 9 C 1.54815 * 101.50838 * 96.03026 * 8 7 3 10 10 N 1.46846 * 105.42218 * 25.07230 * 9 8 7 11 11 C 1.46502 * 124.36456 * 163.03505 * 10 9 8 12 12 C 1.52998 * 109.47401 * 269.72181 * 11 10 9 13 13 C 1.50698 * 109.47416 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99857 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00061 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99932 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99971 * 0.27984 * 15 13 12 18 18 H 1.48496 * 109.47317 * 269.72190 * 17 15 13 19 19 H 1.48501 * 109.47197 * 29.72577 * 17 15 13 20 20 H 1.48500 * 109.46928 * 149.72100 * 17 15 13 21 21 C 1.34668 * 111.26938 * 342.76795 * 10 9 8 22 22 O 1.21274 * 125.08681 * 181.11343 * 21 10 9 23 23 H 1.09007 * 109.46947 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47428 * 299.99619 * 1 2 3 25 25 H 1.08999 * 109.47514 * 60.00240 * 1 2 3 26 26 H 1.09000 * 109.47428 * 240.00381 * 2 1 3 27 27 H 1.08999 * 109.47514 * 119.99760 * 2 1 3 28 28 H 1.09006 * 110.64036 * 40.34803 * 4 3 2 29 29 H 1.08995 * 110.78393 * 277.35010 * 4 3 2 30 30 H 1.08997 * 110.72006 * 204.67937 * 5 4 3 31 31 H 1.09001 * 110.71447 * 81.40960 * 5 4 3 32 32 H 1.08999 * 110.37018 * 263.06113 * 6 5 4 33 33 H 1.09001 * 110.46175 * 140.76853 * 6 5 4 34 34 H 1.09003 * 110.99853 * 214.29989 * 8 7 3 35 35 H 1.08989 * 111.00778 * 338.11242 * 8 7 3 36 36 H 1.09000 * 110.37705 * 266.03436 * 9 8 7 37 37 H 1.09003 * 110.17700 * 144.00239 * 9 8 7 38 38 H 1.09001 * 109.46790 * 149.72162 * 11 10 9 39 39 H 1.09005 * 109.47471 * 29.72480 * 11 10 9 40 40 H 1.09003 * 109.46851 * 59.99768 * 12 11 10 41 41 H 1.09005 * 109.47053 * 300.00555 * 12 11 10 42 42 H 0.97001 * 119.99426 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5595 2.1130 1.2127 5 6 2.5665 3.2855 1.3300 6 6 3.9014 2.6421 0.8822 7 6 3.4891 1.4246 0.0479 8 6 4.0477 0.1310 0.6662 9 6 4.3698 -0.7017 -0.5986 10 7 4.5831 0.2806 -1.6691 11 6 5.2501 -0.0130 -2.9400 12 6 6.7507 0.2512 -2.8014 13 6 7.4367 -0.0502 -4.1089 14 1 6.8600 -0.3953 -4.9543 15 6 8.8004 0.1155 -4.2262 16 7 9.3992 -0.1480 -5.3671 17 14 9.7988 0.7063 -2.7620 18 1 9.8733 2.1892 -2.7795 19 1 9.1471 0.2581 -1.5052 20 1 11.1699 0.1409 -2.8374 21 6 4.0814 1.4846 -1.3342 22 8 4.1033 2.4700 -2.0409 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6145 1.4698 2.0910 29 1 0.5457 2.4893 1.0765 30 1 2.6333 3.6348 2.3603 31 1 2.2883 4.1009 0.6624 32 1 4.4814 2.3285 1.7501 33 1 4.4764 3.3411 0.2748 34 1 4.9486 0.3324 1.2457 35 1 3.2952 -0.3663 1.2779 36 1 3.5327 -1.3542 -0.8467 37 1 5.2737 -1.2902 -0.4411 38 1 4.8393 0.6258 -3.7219 39 1 5.0879 -1.0585 -3.2025 40 1 7.1614 -0.3876 -2.0195 41 1 6.9128 1.2967 -2.5389 42 1 10.3587 -0.0317 -5.4494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272436819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:38 Heat of formation + Delta-G solvation = -42.511862 kcal Electronic energy + Delta-G solvation = -21455.526887 eV Core-core repulsion = 18434.698417 eV Total energy + Delta-G solvation = -3020.828470 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.38278 -39.20346 -37.44686 -35.52403 -34.43467 -33.66859 -31.13025 -29.77427 -28.88831 -27.10295 -24.97995 -23.81222 -23.26708 -22.00870 -21.08908 -19.87214 -19.09871 -18.07425 -17.33890 -16.60991 -16.42608 -16.04387 -15.94766 -15.53417 -15.00939 -14.89067 -14.71693 -14.60404 -14.10665 -13.86458 -13.64563 -13.51801 -13.22874 -12.99457 -12.83160 -12.57414 -12.33290 -12.18270 -12.16577 -12.07148 -11.95479 -11.80071 -11.60268 -11.55171 -11.37911 -10.86851 -10.81910 -9.63507 -9.29955 -8.35832 -6.41124 1.29636 1.31944 1.42866 1.52039 2.05631 2.30115 2.98717 2.99104 3.29594 3.38073 3.68665 3.87236 3.93806 4.09324 4.20067 4.21877 4.27738 4.35921 4.46686 4.51507 4.60330 4.66011 4.67713 4.74611 4.84105 4.88679 4.90709 5.03016 5.05320 5.08150 5.11776 5.20260 5.25865 5.28029 5.36110 5.46041 5.69453 5.87328 6.09061 6.17923 6.26712 6.64924 7.20391 7.24963 8.80601 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.005065 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.286535 B = 5527.018177 C = 5874.165226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.027 3.973 3 N -0.519 5.519 4 C 0.042 3.958 5 C -0.118 4.118 6 C -0.117 4.117 7 C 0.069 3.931 8 C -0.150 4.150 9 C 0.092 3.908 10 N -0.620 5.620 11 C 0.147 3.853 12 C -0.012 4.012 13 C -0.535 4.535 14 H 0.039 0.961 15 C 0.011 3.989 16 N -0.945 5.945 17 Si 0.948 3.052 18 H -0.277 1.277 19 H -0.246 1.246 20 H -0.274 1.274 21 C 0.518 3.482 22 O -0.579 6.579 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.031 0.969 41 H -0.003 1.003 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 -1.368 22.391 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 N -0.245 5.245 4 C -0.085 4.085 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.024 4.024 8 C -0.189 4.189 9 C -0.030 4.030 10 N -0.352 5.352 11 C 0.026 3.974 12 C -0.050 4.050 13 C -0.573 4.573 14 H 0.057 0.943 15 C -0.186 4.186 16 N -0.585 5.585 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.169 1.169 20 H -0.199 1.199 21 C 0.306 3.694 22 O -0.457 6.457 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.015 0.985 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.113 -0.685 21.369 27.386 hybrid contribution 1.254 0.054 -0.127 1.262 sum -15.859 -0.630 21.242 26.517 Atomic orbital electron populations 1.21769 0.93528 1.02675 1.02187 1.22672 0.97003 0.88410 1.01924 1.64468 1.03575 1.15993 1.40459 1.23362 0.99592 0.94847 0.90694 1.22540 0.92904 0.97659 1.02462 1.22370 0.99387 0.94857 0.98974 1.21828 0.90630 0.98357 0.91593 1.23420 1.03950 0.94453 0.97030 1.22521 1.03177 0.91555 0.85756 1.48684 1.56660 1.11663 1.18219 1.21153 0.92052 1.00947 0.83289 1.19724 0.93608 0.95590 0.96096 1.21269 0.93293 1.45187 0.97546 0.94316 1.25923 0.99089 0.94743 0.98885 1.70046 1.10880 1.50447 1.27126 0.85691 0.78020 0.78662 0.80452 1.20270 1.16944 1.19941 1.21210 0.76900 0.82092 0.89219 1.90623 1.60194 1.36204 1.58726 0.90559 0.91309 0.93813 0.91951 0.90718 0.90714 0.88988 0.87820 0.92468 0.87865 0.93414 0.88220 0.85023 0.89045 0.89359 0.93526 0.89262 0.95041 0.98511 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.80 71.98 0.71 -1.29 16 2 C 0.03 0.45 4.40 86.30 0.38 0.83 16 3 N -0.52 -11.59 5.02 -839.70 -4.21 -15.80 16 4 C 0.04 0.64 5.44 86.63 0.47 1.11 16 5 C -0.12 -2.07 7.07 31.89 0.23 -1.85 16 6 C -0.12 -2.68 6.19 31.29 0.19 -2.49 16 7 C 0.07 1.76 0.80 3.06 0.00 1.76 16 8 C -0.15 -2.67 5.69 31.51 0.18 -2.49 16 9 C 0.09 2.12 6.66 86.93 0.58 2.70 16 10 N -0.62 -21.97 2.94 -817.79 -2.41 -24.38 16 11 C 0.15 6.33 5.88 86.38 0.51 6.84 16 12 C -0.01 -0.59 4.36 29.85 0.13 -0.46 16 13 C -0.53 -31.96 9.66 25.60 0.25 -31.71 16 14 H 0.04 2.51 7.99 -2.91 -0.02 2.48 16 15 C 0.01 0.68 5.47 84.65 0.46 1.14 16 16 N -0.94 -60.31 13.96 21.45 0.30 -60.01 16 17 Si 0.95 45.86 27.47 68.60 1.88 47.74 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.25 -10.94 6.53 99.48 0.65 -10.29 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 21 C 0.52 19.77 7.05 87.61 0.62 20.38 16 22 O -0.58 -28.30 17.13 -3.01 -0.05 -28.35 16 23 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.07 0.76 6.98 -2.39 -0.02 0.74 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 1.27 6.16 -2.39 -0.01 1.26 16 27 H 0.08 0.84 5.44 -2.39 -0.01 0.83 16 28 H 0.07 0.76 7.98 -2.38 -0.02 0.74 16 29 H 0.09 1.30 7.71 -2.39 -0.02 1.28 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.73 7.38 -2.39 -0.02 1.71 16 33 H 0.05 1.43 7.43 -2.39 -0.02 1.42 16 34 H 0.10 1.59 7.55 -2.39 -0.02 1.57 16 35 H 0.13 1.43 5.29 -2.39 -0.01 1.42 16 36 H 0.09 1.72 6.40 -2.39 -0.02 1.71 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16 39 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 40 H 0.03 1.47 7.19 -2.39 -0.02 1.46 16 41 H 0.00 -0.19 7.58 -2.38 -0.02 -0.21 16 42 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -79.29 321.90 1.15 -78.14 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.94 Total: 8.18 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 4.70 Total: -5.52 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -6.32 Total: -100.19 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.35 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Total: -79.29 1.15 -78.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272436819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.629 kcal (2) G-P(sol) polarization free energy of solvation -79.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds